RNA–Protein interactions for RNA: ENST00000549883.5

HDAC7-229, Transcript of histone deacetylase 7, humanhuman

TSL 3

Gene HDAC7, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-229ENST00000549883 NISCHQ9Y2I1 1504 aa24.1■■□□□ 1.45
HDAC7-229ENST00000549883 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
HDAC7-229ENST00000549883 ABCC9O60706 1549 aa21.21■□□□□ 0.99
HDAC7-229ENST00000549883 RB1CC1Q8TDY2 1594 aa20.25■□□□□ 0.83
HDAC7-229ENST00000549883 DCAF8L2P0C7V8 631 aa20.23■□□□□ 0.83
HDAC7-229ENST00000549883 NACADO15069 1562 aa20.19■□□□□ 0.82
HDAC7-229ENST00000549883 ZCCHC6Q5VYS8 1495 aaKnown RBP20.05■□□□□ 0.8
HDAC7-229ENST00000549883 MYO15BQ96JP2 1530 aa19.97■□□□□ 0.79
HDAC7-229ENST00000549883 UNC13AQ9UPW8 1703 aa19.93■□□□□ 0.78
HDAC7-229ENST00000549883 DCAF1Q9Y4B6 1507 aa19.87■□□□□ 0.77
HDAC7-229ENST00000549883 PABPN1Q86U42 306 aaKnown RBP eCLIP19.82■□□□□ 0.76
HDAC7-229ENST00000549883 BICRAQ9NZM4 1560 aa19.74■□□□□ 0.75
HDAC7-229ENST00000549883 DNAJC5BQ9UF47 199 aa19.66■□□□□ 0.74
HDAC7-229ENST00000549883 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
HDAC7-229ENST00000549883 SHROOM4Q9ULL8 1493 aa19.34■□□□□ 0.69
HDAC7-229ENST00000549883 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
HDAC7-229ENST00000549883 CC2D2AQ9P2K1 1620 aa19.17■□□□□ 0.66
HDAC7-229ENST00000549883 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
HDAC7-229ENST00000549883 SMARCA4P51532 1647 aa18.75■□□□□ 0.59
HDAC7-229ENST00000549883 ATAD2BQ9ULI0 1458 aa18.67■□□□□ 0.58
HDAC7-229ENST00000549883 BAZ1AQ9NRL2 1556 aaPredicted RBP18.65■□□□□ 0.58
HDAC7-229ENST00000549883 NCAPD3P42695 1498 aa18.65■□□□□ 0.58
HDAC7-229ENST00000549883 MROH2BQ7Z745 1585 aa18.64■□□□□ 0.57
HDAC7-229ENST00000549883 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
HDAC7-229ENST00000549883 PEG3Q9GZU2 1588 aa18.53■□□□□ 0.56
HDAC7-229ENST00000549883 HMGXB3Q12766 1538 aa18.53■□□□□ 0.56
HDAC7-229ENST00000549883 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
HDAC7-229ENST00000549883 WIZO95785 1651 aa18.44■□□□□ 0.54
HDAC7-229ENST00000549883 NESP48681 1621 aa18.34■□□□□ 0.53
HDAC7-229ENST00000549883 RSF1Q96T23 1441 aaPredicted RBP18.34■□□□□ 0.53
HDAC7-229ENST00000549883 ERCC6Q03468 1493 aa18.21■□□□□ 0.51
HDAC7-229ENST00000549883 LAMC3Q9Y6N6 1575 aa18.17■□□□□ 0.5
HDAC7-229ENST00000549883 TOP2AP11388 1531 aaKnown RBP18.16■□□□□ 0.5
HDAC7-229ENST00000549883 KIF21AQ7Z4S6 1674 aa18.12■□□□□ 0.49
HDAC7-229ENST00000549883 CADPSQ9ULU8 1353 aa18.09■□□□□ 0.49
HDAC7-229ENST00000549883 THOC2Q8NI27 1593 aaKnown RBP18.05■□□□□ 0.48
HDAC7-229ENST00000549883 CUX2O14529 1486 aa18.03■□□□□ 0.48
HDAC7-229ENST00000549883 PDS5BQ9NTI5 1447 aa18.01■□□□□ 0.47
HDAC7-229ENST00000549883 CCDC88BA6NC98 1476 aa17.99■□□□□ 0.47
HDAC7-229ENST00000549883 CFTRP13569 1480 aa17.97■□□□□ 0.47
HDAC7-229ENST00000549883 FANCD2Q9BXW9 1451 aa17.92■□□□□ 0.46
HDAC7-229ENST00000549883 MRC2Q9UBG0 1479 aa17.89■□□□□ 0.45
HDAC7-229ENST00000549883 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
HDAC7-229ENST00000549883 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
HDAC7-229ENST00000549883 WDR62O43379 1518 aa17.84■□□□□ 0.45
HDAC7-229ENST00000549883 SUPT5HO00267 1087 aaKnown RBP17.81■□□□□ 0.44
HDAC7-229ENST00000549883 URB2Q14146 1524 aaKnown RBP17.79■□□□□ 0.44
HDAC7-229ENST00000549883 DNAJC5Q9H3Z4 198 aa17.69■□□□□ 0.42
HDAC7-229ENST00000549883 TOPBP1Q92547 1522 aa17.63■□□□□ 0.41
HDAC7-229ENST00000549883 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
HDAC7-229ENST00000549883 ZNF608Q9ULD9 1512 aaPredicted RBP17.53■□□□□ 0.4
HDAC7-229ENST00000549883 ABCC8Q09428 1581 aa17.52■□□□□ 0.39
HDAC7-229ENST00000549883 IFT140Q96RY7 1462 aa17.5■□□□□ 0.39
HDAC7-229ENST00000549883 CUX1P39880 1505 aa17.48■□□□□ 0.39
HDAC7-229ENST00000549883 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
HDAC7-229ENST00000549883 TARBP1Q13395 1621 aaKnown RBP17.47■□□□□ 0.39
HDAC7-229ENST00000549883 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
HDAC7-229ENST00000549883 EIF4G3O43432 1585 aaKnown RBP17.42■□□□□ 0.38
HDAC7-229ENST00000549883 FGD5Q6ZNL6 1462 aa17.42■□□□□ 0.38
HDAC7-229ENST00000549883 AQRO60306 1485 aaKnown RBP eCLIP17.39■□□□□ 0.372e-7■■■■■ 32.9
HDAC7-229ENST00000549883 SOGA1O94964 1423 aa17.38■□□□□ 0.37
HDAC7-229ENST00000549883 TDRD9Q8NDG6 1382 aaKnown RBP17.34■□□□□ 0.37
HDAC7-229ENST00000549883 WDR97A6NE52 1622 aa17.3■□□□□ 0.36
HDAC7-229ENST00000549883 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
HDAC7-229ENST00000549883 OSCARQ8IYS5 282 aa17.29■□□□□ 0.36
HDAC7-229ENST00000549883 CHD1O14646 1710 aa17.27■□□□□ 0.35
HDAC7-229ENST00000549883 BIVM-ERCC5R4GMW8 1640 aa17.26■□□□□ 0.35
HDAC7-229ENST00000549883 WRNQ14191 1432 aaPredicted RBP eCLIP17.26■□□□□ 0.35
HDAC7-229ENST00000549883 TOP2BQ02880 1626 aa17.25■□□□□ 0.35
HDAC7-229ENST00000549883 SNAPC4Q5SXM2 1469 aa17.2■□□□□ 0.34
HDAC7-229ENST00000549883 ABCA10Q8WWZ4 1543 aa17.2■□□□□ 0.34
HDAC7-229ENST00000549883 PBRM1Q86U86 1689 aa17.19■□□□□ 0.34
HDAC7-229ENST00000549883 ABCA5Q8WWZ7 1642 aa17.18■□□□□ 0.34
HDAC7-229ENST00000549883 FBLN2P98095 1184 aa17.18■□□□□ 0.34
HDAC7-229ENST00000549883 GRIN2BQ13224 1484 aa17.17■□□□□ 0.34
HDAC7-229ENST00000549883 GAPVD1Q14C86 1478 aa17.17■□□□□ 0.34
HDAC7-229ENST00000549883 MAGI1Q96QZ7 1491 aaPredicted RBP17.12■□□□□ 0.33
HDAC7-229ENST00000549883 TRIM41Q8WV44 630 aa17.1■□□□□ 0.33
HDAC7-229ENST00000549883 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
HDAC7-229ENST00000549883 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
HDAC7-229ENST00000549883 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
HDAC7-229ENST00000549883 SYNJ2O15056 1496 aa17.07■□□□□ 0.32
HDAC7-229ENST00000549883 CHMP7Q8WUX9 453 aaPredicted RBP17.07■□□□□ 0.32
HDAC7-229ENST00000549883 ARHGEF11O15085 1522 aa17.06■□□□□ 0.32
HDAC7-229ENST00000549883 ADAMTS12P58397 1594 aa17.02■□□□□ 0.32
HDAC7-229ENST00000549883 CLASP1Q7Z460 1538 aa17.02■□□□□ 0.32
HDAC7-229ENST00000549883 ERICH3Q5RHP9 1530 aa16.98■□□□□ 0.31
HDAC7-229ENST00000549883 GRIN2AQ12879 1464 aa16.97■□□□□ 0.31
HDAC7-229ENST00000549883 FHAD1B1AJZ9 1412 aa16.95■□□□□ 0.3
HDAC7-229ENST00000549883 CEP170Q5SW79 1584 aa16.94■□□□□ 0.3
HDAC7-229ENST00000549883 ARAP1Q96P48 1450 aa16.93■□□□□ 0.3
HDAC7-229ENST00000549883 CYB5RLQ6IPT4 315 aa16.91■□□□□ 0.3
HDAC7-229ENST00000549883 NUP160Q12769 1436 aa16.89■□□□□ 0.29
HDAC7-229ENST00000549883 IGF1RP08069 1367 aa16.89■□□□□ 0.29
HDAC7-229ENST00000549883 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
HDAC7-229ENST00000549883 ERCC6L2Q5T890 1561 aa16.86■□□□□ 0.29
HDAC7-229ENST00000549883 RUSC2Q8N2Y8 1516 aa16.84■□□□□ 0.29
HDAC7-229ENST00000549883 SHROOM2Q13796 1616 aa16.81■□□□□ 0.28
HDAC7-229ENST00000549883 CUL7Q14999 1698 aa16.8■□□□□ 0.28
HDAC7-229ENST00000549883 CARMIL1Q5VZK9 1371 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms