RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 NISCHQ9Y2I1 1504 aa17.67■□□□□ 0.42
PTCH1-219ENST00000549678 CCDC180Q9P1Z9 1646 aa15.84■□□□□ 0.13
PTCH1-219ENST00000549678 ABCC9O60706 1549 aa15.7■□□□□ 0.1
PTCH1-219ENST00000549678 RB1CC1Q8TDY2 1594 aa15.04■□□□□ -0
PTCH1-219ENST00000549678 NACADO15069 1562 aa14.98□□□□□ -0.01
PTCH1-219ENST00000549678 MYO15BQ96JP2 1530 aa14.86□□□□□ -0.03
PTCH1-219ENST00000549678 DCAF8L2P0C7V8 631 aa14.81□□□□□ -0.04
PTCH1-219ENST00000549678 DNAJC5BQ9UF47 199 aa14.78□□□□□ -0.04
PTCH1-219ENST00000549678 ZCCHC6Q5VYS8 1495 aaKnown RBP14.67□□□□□ -0.06
PTCH1-219ENST00000549678 DCAF1Q9Y4B6 1507 aa14.66□□□□□ -0.06
PTCH1-219ENST00000549678 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
PTCH1-219ENST00000549678 UNC13AQ9UPW8 1703 aa14.61□□□□□ -0.07
PTCH1-219ENST00000549678 BICRAQ9NZM4 1560 aa14.55□□□□□ -0.08
PTCH1-219ENST00000549678 SHROOM4Q9ULL8 1493 aa14.51□□□□□ -0.09
PTCH1-219ENST00000549678 SCRIBQ14160 1630 aa14.35□□□□□ -0.11
PTCH1-219ENST00000549678 EIF4G1Q04637 1599 aaKnown RBP14.22□□□□□ -0.13
PTCH1-219ENST00000549678 CC2D2AQ9P2K1 1620 aa14.2□□□□□ -0.14
PTCH1-219ENST00000549678 CECR2Q9BXF3 1484 aa14.18□□□□□ -0.14
PTCH1-219ENST00000549678 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
PTCH1-219ENST00000549678 ATAD2BQ9ULI0 1458 aa13.77□□□□□ -0.21
PTCH1-219ENST00000549678 SMARCA2P51531 1590 aa13.76□□□□□ -0.21
PTCH1-219ENST00000549678 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
PTCH1-219ENST00000549678 BAZ1AQ9NRL2 1556 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-219ENST00000549678 HMGXB3Q12766 1538 aa13.73□□□□□ -0.21
PTCH1-219ENST00000549678 PEG3Q9GZU2 1588 aa13.66□□□□□ -0.22
PTCH1-219ENST00000549678 BAZ1BQ9UIG0 1483 aaKnown RBP13.64□□□□□ -0.23
PTCH1-219ENST00000549678 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
PTCH1-219ENST00000549678 CUX2O14529 1486 aa13.59□□□□□ -0.23
PTCH1-219ENST00000549678 MROH2BQ7Z745 1585 aa13.57□□□□□ -0.24
PTCH1-219ENST00000549678 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
PTCH1-219ENST00000549678 DNAJC5Q9H3Z4 198 aa13.49□□□□□ -0.25
PTCH1-219ENST00000549678 NESP48681 1621 aa13.48□□□□□ -0.25
PTCH1-219ENST00000549678 PDS5BQ9NTI5 1447 aa13.44□□□□□ -0.26
PTCH1-219ENST00000549678 CADPSQ9ULU8 1353 aa13.4□□□□□ -0.26
PTCH1-219ENST00000549678 WIZO95785 1651 aa13.38□□□□□ -0.27
PTCH1-219ENST00000549678 THOC2Q8NI27 1593 aaKnown RBP13.37□□□□□ -0.27
PTCH1-219ENST00000549678 RSF1Q96T23 1441 aaPredicted RBP13.35□□□□□ -0.27
PTCH1-219ENST00000549678 KIF21AQ7Z4S6 1674 aa13.31□□□□□ -0.28
PTCH1-219ENST00000549678 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
PTCH1-219ENST00000549678 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
PTCH1-219ENST00000549678 CFTRP13569 1480 aa13.26□□□□□ -0.29
PTCH1-219ENST00000549678 WDR62O43379 1518 aa13.24□□□□□ -0.29
PTCH1-219ENST00000549678 CEP164Q9UPV0 1460 aa13.24□□□□□ -0.29
PTCH1-219ENST00000549678 FANCD2Q9BXW9 1451 aa13.23□□□□□ -0.29
PTCH1-219ENST00000549678 CCDC88BA6NC98 1476 aa13.11□□□□□ -0.31
PTCH1-219ENST00000549678 PRDM2Q13029 1718 aa13.1□□□□□ -0.31
PTCH1-219ENST00000549678 URB2Q14146 1524 aaKnown RBP13.08□□□□□ -0.32
PTCH1-219ENST00000549678 SUPT5HO00267 1087 aaKnown RBP13.06□□□□□ -0.32
PTCH1-219ENST00000549678 ABCC8Q09428 1581 aa13.03□□□□□ -0.32
PTCH1-219ENST00000549678 IFT140Q96RY7 1462 aa13□□□□□ -0.33
PTCH1-219ENST00000549678 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
PTCH1-219ENST00000549678 OSCARQ8IYS5 282 aa12.96□□□□□ -0.33
PTCH1-219ENST00000549678 DNMBPQ6XZF7 1577 aa12.94□□□□□ -0.34
PTCH1-219ENST00000549678 ZNF608Q9ULD9 1512 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-219ENST00000549678 TRIM41Q8WV44 630 aa12.85□□□□□ -0.35
PTCH1-219ENST00000549678 POLA1P09884 1462 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-219ENST00000549678 EIF4G3O43432 1585 aaKnown RBP12.84□□□□□ -0.35
PTCH1-219ENST00000549678 TARBP1Q13395 1621 aaKnown RBP12.84□□□□□ -0.35
PTCH1-219ENST00000549678 WDR97A6NE52 1622 aa12.81□□□□□ -0.36
PTCH1-219ENST00000549678 SOGA1O94964 1423 aa12.79□□□□□ -0.36
PTCH1-219ENST00000549678 AQRO60306 1485 aaKnown RBP eCLIP12.79□□□□□ -0.36
PTCH1-219ENST00000549678 FGD5Q6ZNL6 1462 aa12.77□□□□□ -0.37
PTCH1-219ENST00000549678 RAD54L2Q9Y4B4 1467 aa12.76□□□□□ -0.37
PTCH1-219ENST00000549678 CUX1P39880 1505 aa12.75□□□□□ -0.37
PTCH1-219ENST00000549678 TDRD9Q8NDG6 1382 aaKnown RBP12.73□□□□□ -0.37
PTCH1-219ENST00000549678 ARHGEF11O15085 1522 aa12.72□□□□□ -0.37
PTCH1-219ENST00000549678 RIMBP3CA6NJZ7 1639 aa12.72□□□□□ -0.37
PTCH1-219ENST00000549678 RIMBP3BA6NNM3 1639 aa12.72□□□□□ -0.37
PTCH1-219ENST00000549678 RIMBP3Q9UFD9 1639 aa12.72□□□□□ -0.37
PTCH1-219ENST00000549678 MAGI1Q96QZ7 1491 aaPredicted RBP12.71□□□□□ -0.38
PTCH1-219ENST00000549678 FBLN2P98095 1184 aa12.7□□□□□ -0.38
PTCH1-219ENST00000549678 CHD1O14646 1710 aa12.7□□□□□ -0.38
PTCH1-219ENST00000549678 GRIN2BQ13224 1484 aa12.7□□□□□ -0.38
PTCH1-219ENST00000549678 SNAPC4Q5SXM2 1469 aa12.68□□□□□ -0.38
PTCH1-219ENST00000549678 ABCA10Q8WWZ4 1543 aa12.67□□□□□ -0.38
PTCH1-219ENST00000549678 CHMP7Q8WUX9 453 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-219ENST00000549678 SYNJ2O15056 1496 aa12.65□□□□□ -0.38
PTCH1-219ENST00000549678 GAPVD1Q14C86 1478 aa12.65□□□□□ -0.38
PTCH1-219ENST00000549678 SYNJ1O43426 1573 aa12.64□□□□□ -0.39
PTCH1-219ENST00000549678 WRNQ14191 1432 aaPredicted RBP eCLIP12.63□□□□□ -0.39
PTCH1-219ENST00000549678 CYB5RLQ6IPT4 315 aa12.61□□□□□ -0.39
PTCH1-219ENST00000549678 CLASP1Q7Z460 1538 aa12.61□□□□□ -0.39
PTCH1-219ENST00000549678 ABCA5Q8WWZ7 1642 aa12.6□□□□□ -0.39
PTCH1-219ENST00000549678 ARAP1Q96P48 1450 aa12.59□□□□□ -0.39
PTCH1-219ENST00000549678 TOP2BQ02880 1626 aa12.59□□□□□ -0.39
PTCH1-219ENST00000549678 BIVM-ERCC5R4GMW8 1640 aa12.59□□□□□ -0.39
PTCH1-219ENST00000549678 PBRM1Q86U86 1689 aa12.58□□□□□ -0.4
PTCH1-219ENST00000549678 FHAD1B1AJZ9 1412 aa12.52□□□□□ -0.41
PTCH1-219ENST00000549678 GRIN2AQ12879 1464 aa12.52□□□□□ -0.41
PTCH1-219ENST00000549678 ERICH3Q5RHP9 1530 aa12.52□□□□□ -0.41
PTCH1-219ENST00000549678 ADAMTS12P58397 1594 aa12.51□□□□□ -0.41
PTCH1-219ENST00000549678 NUP160Q12769 1436 aa12.49□□□□□ -0.41
PTCH1-219ENST00000549678 TRHP20396 242 aaPredicted RBP12.44□□□□□ -0.42
PTCH1-219ENST00000549678 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
PTCH1-219ENST00000549678 SHROOM2Q13796 1616 aa12.4□□□□□ -0.42
PTCH1-219ENST00000549678 KIF27Q86VH2 1401 aa12.39□□□□□ -0.43
PTCH1-219ENST00000549678 JPH4Q96JJ6 628 aa12.36□□□□□ -0.43
PTCH1-219ENST00000549678 IGF1RP08069 1367 aa12.35□□□□□ -0.43
PTCH1-219ENST00000549678 ERCC6L2Q5T890 1561 aa12.35□□□□□ -0.43
PTCH1-219ENST00000549678 PRG4Q92954 1404 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 348.2 ms