RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 NISCHQ9Y2I1 1504 aa31.52■■■□□ 2.64
PRPF40B-210ENST00000549547 CCDC180Q9P1Z9 1646 aa28.12■■■□□ 2.09
PRPF40B-210ENST00000549547 ABCC9O60706 1549 aa27.36■■□□□ 1.97
PRPF40B-210ENST00000549547 RB1CC1Q8TDY2 1594 aa26.43■■□□□ 1.82
PRPF40B-210ENST00000549547 NACADO15069 1562 aa26.39■■□□□ 1.82
PRPF40B-210ENST00000549547 ZCCHC6Q5VYS8 1495 aaKnown RBP26.26■■□□□ 1.79
PRPF40B-210ENST00000549547 DCAF8L2P0C7V8 631 aa26.26■■□□□ 1.79
PRPF40B-210ENST00000549547 MYO15BQ96JP2 1530 aa26.25■■□□□ 1.79
PRPF40B-210ENST00000549547 DCAF1Q9Y4B6 1507 aa26.14■■□□□ 1.77
PRPF40B-210ENST00000549547 UNC13AQ9UPW8 1703 aa25.81■■□□□ 1.72
PRPF40B-210ENST00000549547 SCRIBQ14160 1630 aa25.57■■□□□ 1.68
PRPF40B-210ENST00000549547 BICRAQ9NZM4 1560 aa25.55■■□□□ 1.68
PRPF40B-210ENST00000549547 PABPN1Q86U42 306 aaKnown RBP eCLIP25.52■■□□□ 1.68
PRPF40B-210ENST00000549547 SHROOM4Q9ULL8 1493 aa25.41■■□□□ 1.66
PRPF40B-210ENST00000549547 DNAJC5BQ9UF47 199 aa25.01■■□□□ 1.59
PRPF40B-210ENST00000549547 EIF4G1Q04637 1599 aaKnown RBP24.91■■□□□ 1.58
PRPF40B-210ENST00000549547 CC2D2AQ9P2K1 1620 aa24.8■■□□□ 1.56
PRPF40B-210ENST00000549547 CECR2Q9BXF3 1484 aa24.62■■□□□ 1.53
PRPF40B-210ENST00000549547 SMARCA4P51532 1647 aa24.48■■□□□ 1.51
PRPF40B-210ENST00000549547 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
PRPF40B-210ENST00000549547 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
PRPF40B-210ENST00000549547 NCAPD3P42695 1498 aa24.31■■□□□ 1.48
PRPF40B-210ENST00000549547 ATAD2BQ9ULI0 1458 aa24.3■■□□□ 1.48
PRPF40B-210ENST00000549547 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
PRPF40B-210ENST00000549547 PEG3Q9GZU2 1588 aa24.25■■□□□ 1.47
PRPF40B-210ENST00000549547 HMGXB3Q12766 1538 aa24.24■■□□□ 1.47
PRPF40B-210ENST00000549547 BAZ1BQ9UIG0 1483 aaKnown RBP24.14■■□□□ 1.46
PRPF40B-210ENST00000549547 WIZO95785 1651 aa24.02■■□□□ 1.44
PRPF40B-210ENST00000549547 RSF1Q96T23 1441 aaPredicted RBP23.98■■□□□ 1.43
PRPF40B-210ENST00000549547 TOP2AP11388 1531 aaKnown RBP23.8■■□□□ 1.4
PRPF40B-210ENST00000549547 LAMC3Q9Y6N6 1575 aa23.72■■□□□ 1.39
PRPF40B-210ENST00000549547 NESP48681 1621 aa23.66■■□□□ 1.38
PRPF40B-210ENST00000549547 ERCC6Q03468 1493 aa23.65■■□□□ 1.38
PRPF40B-210ENST00000549547 CADPSQ9ULU8 1353 aa23.59■■□□□ 1.37
PRPF40B-210ENST00000549547 PDS5BQ9NTI5 1447 aa23.54■■□□□ 1.36
PRPF40B-210ENST00000549547 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
PRPF40B-210ENST00000549547 CCDC88BA6NC98 1476 aa23.47■■□□□ 1.35
PRPF40B-210ENST00000549547 CFTRP13569 1480 aa23.46■■□□□ 1.35
PRPF40B-210ENST00000549547 CUX2O14529 1486 aa23.42■■□□□ 1.34
PRPF40B-210ENST00000549547 PRDM2Q13029 1718 aa23.4■■□□□ 1.34
PRPF40B-210ENST00000549547 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
PRPF40B-210ENST00000549547 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
PRPF40B-210ENST00000549547 CEP164Q9UPV0 1460 aa23.33■■□□□ 1.33
PRPF40B-210ENST00000549547 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
PRPF40B-210ENST00000549547 MRC2Q9UBG0 1479 aa23.29■■□□□ 1.32
PRPF40B-210ENST00000549547 WDR62O43379 1518 aa23.21■■□□□ 1.31
PRPF40B-210ENST00000549547 URB2Q14146 1524 aaKnown RBP23.07■■□□□ 1.28
PRPF40B-210ENST00000549547 ABCC8Q09428 1581 aa23.02■■□□□ 1.28
PRPF40B-210ENST00000549547 DNMBPQ6XZF7 1577 aa22.97■■□□□ 1.27
PRPF40B-210ENST00000549547 TOPBP1Q92547 1522 aa22.95■■□□□ 1.26
PRPF40B-210ENST00000549547 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
PRPF40B-210ENST00000549547 POLA1P09884 1462 aaPredicted RBP22.76■■□□□ 1.23
PRPF40B-210ENST00000549547 CUX1P39880 1505 aa22.76■■□□□ 1.23
PRPF40B-210ENST00000549547 TARBP1Q13395 1621 aaKnown RBP22.71■■□□□ 1.23
PRPF40B-210ENST00000549547 FGD5Q6ZNL6 1462 aa22.7■■□□□ 1.22
PRPF40B-210ENST00000549547 ZNF608Q9ULD9 1512 aaPredicted RBP22.66■■□□□ 1.22
PRPF40B-210ENST00000549547 SOGA1O94964 1423 aa22.65■■□□□ 1.22
PRPF40B-210ENST00000549547 EIF4G3O43432 1585 aaKnown RBP22.65■■□□□ 1.22
PRPF40B-210ENST00000549547 WRNQ14191 1432 aaPredicted RBP eCLIP22.65■■□□□ 1.22
PRPF40B-210ENST00000549547 BIVM-ERCC5R4GMW8 1640 aa22.64■■□□□ 1.21
PRPF40B-210ENST00000549547 WDR97A6NE52 1622 aa22.63■■□□□ 1.21
PRPF40B-210ENST00000549547 TOP2BQ02880 1626 aa22.62■■□□□ 1.21
PRPF40B-210ENST00000549547 RAD54L2Q9Y4B4 1467 aa22.61■■□□□ 1.21
PRPF40B-210ENST00000549547 DNAJC5Q9H3Z4 198 aa22.6■■□□□ 1.21
PRPF40B-210ENST00000549547 SYNJ1O43426 1573 aa22.58■■□□□ 1.2
PRPF40B-210ENST00000549547 AQRO60306 1485 aaKnown RBP eCLIP22.54■■□□□ 1.2
PRPF40B-210ENST00000549547 ABCA10Q8WWZ4 1543 aa22.51■■□□□ 1.19
PRPF40B-210ENST00000549547 TDRD9Q8NDG6 1382 aaKnown RBP22.49■■□□□ 1.19
PRPF40B-210ENST00000549547 ABCA5Q8WWZ7 1642 aa22.42■■□□□ 1.18
PRPF40B-210ENST00000549547 GRIN2BQ13224 1484 aa22.42■■□□□ 1.18
PRPF40B-210ENST00000549547 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
PRPF40B-210ENST00000549547 GAPVD1Q14C86 1478 aa22.41■■□□□ 1.18
PRPF40B-210ENST00000549547 OSCARQ8IYS5 282 aa22.4■■□□□ 1.18
PRPF40B-210ENST00000549547 MAGI1Q96QZ7 1491 aaPredicted RBP22.39■■□□□ 1.17
PRPF40B-210ENST00000549547 CHD1O14646 1710 aa22.37■■□□□ 1.17
PRPF40B-210ENST00000549547 SNAPC4Q5SXM2 1469 aa22.36■■□□□ 1.17
PRPF40B-210ENST00000549547 SYNJ2O15056 1496 aa22.28■■□□□ 1.16
PRPF40B-210ENST00000549547 FBLN2P98095 1184 aa22.27■■□□□ 1.16
PRPF40B-210ENST00000549547 ERICH3Q5RHP9 1530 aa22.26■■□□□ 1.15
PRPF40B-210ENST00000549547 CHMP7Q8WUX9 453 aaPredicted RBP22.25■■□□□ 1.15
PRPF40B-210ENST00000549547 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
PRPF40B-210ENST00000549547 KIF27Q86VH2 1401 aa22.19■■□□□ 1.14
PRPF40B-210ENST00000549547 FHAD1B1AJZ9 1412 aa22.16■■□□□ 1.14
PRPF40B-210ENST00000549547 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
PRPF40B-210ENST00000549547 CLASP1Q7Z460 1538 aa22.11■■□□□ 1.13
PRPF40B-210ENST00000549547 CUL7Q14999 1698 aa22.1■■□□□ 1.13
PRPF40B-210ENST00000549547 TRIM41Q8WV44 630 aa22.09■■□□□ 1.13
PRPF40B-210ENST00000549547 RIMBP3CA6NJZ7 1639 aa22.06■■□□□ 1.12
PRPF40B-210ENST00000549547 RIMBP3BA6NNM3 1639 aa22.06■■□□□ 1.12
PRPF40B-210ENST00000549547 RIMBP3Q9UFD9 1639 aa22.06■■□□□ 1.12
PRPF40B-210ENST00000549547 ARHGEF11O15085 1522 aa22.04■■□□□ 1.12
PRPF40B-210ENST00000549547 IGF1RP08069 1367 aa22.03■■□□□ 1.12
PRPF40B-210ENST00000549547 NUP160Q12769 1436 aa22.02■■□□□ 1.12
PRPF40B-210ENST00000549547 CEP170Q5SW79 1584 aa22■■□□□ 1.11
PRPF40B-210ENST00000549547 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
PRPF40B-210ENST00000549547 RUSC2Q8N2Y8 1516 aa21.89■■□□□ 1.09
PRPF40B-210ENST00000549547 SHROOM2Q13796 1616 aa21.88■■□□□ 1.09
PRPF40B-210ENST00000549547 ARAP1Q96P48 1450 aa21.84■■□□□ 1.09
PRPF40B-210ENST00000549547 RAPGEF2Q9Y4G8 1499 aa21.83■■□□□ 1.08
PRPF40B-210ENST00000549547 KIAA0586Q9BVV6 1533 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms