RNA–Protein interactions for RNA: ENST00000549526.1

SMARCD1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 5

Gene SMARCD1, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-207ENST00000549526 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
SMARCD1-207ENST00000549526 ABCC9O60706 1549 aa20.71■□□□□ 0.91
SMARCD1-207ENST00000549526 DNAJC5BQ9UF47 199 aa20.25■□□□□ 0.83
SMARCD1-207ENST00000549526 CCDC180Q9P1Z9 1646 aa19.76■□□□□ 0.75
SMARCD1-207ENST00000549526 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
SMARCD1-207ENST00000549526 DNAJC5Q9H3Z4 198 aa19.25■□□□□ 0.67
SMARCD1-207ENST00000549526 PABPN1Q86U42 306 aaKnown RBP eCLIP19.19■□□□□ 0.66
SMARCD1-207ENST00000549526 NACADO15069 1562 aa18.91■□□□□ 0.62
SMARCD1-207ENST00000549526 UNC13AQ9UPW8 1703 aa18.87■□□□□ 0.61
SMARCD1-207ENST00000549526 DCAF8L2P0C7V8 631 aa18.84■□□□□ 0.61
SMARCD1-207ENST00000549526 BICRAQ9NZM4 1560 aa18.73■□□□□ 0.59
SMARCD1-207ENST00000549526 CECR2Q9BXF3 1484 aa18.73■□□□□ 0.59
SMARCD1-207ENST00000549526 CC2D2AQ9P2K1 1620 aa18.64■□□□□ 0.57
SMARCD1-207ENST00000549526 EIF4G1Q04637 1599 aaKnown RBP18.35■□□□□ 0.53
SMARCD1-207ENST00000549526 SHROOM4Q9ULL8 1493 aa18.32■□□□□ 0.52
SMARCD1-207ENST00000549526 MYO15BQ96JP2 1530 aa18.29■□□□□ 0.52
SMARCD1-207ENST00000549526 CUX2O14529 1486 aa18.16■□□□□ 0.5
SMARCD1-207ENST00000549526 TRIM41Q8WV44 630 aa18.11■□□□□ 0.49
SMARCD1-207ENST00000549526 SCRIBQ14160 1630 aa18.01■□□□□ 0.47
SMARCD1-207ENST00000549526 ERCC6Q03468 1493 aa17.96■□□□□ 0.47
SMARCD1-207ENST00000549526 DCAF1Q9Y4B6 1507 aa17.74■□□□□ 0.43
SMARCD1-207ENST00000549526 ZCCHC6Q5VYS8 1495 aaKnown RBP17.67■□□□□ 0.42
SMARCD1-207ENST00000549526 NESP48681 1621 aa17.53■□□□□ 0.4
SMARCD1-207ENST00000549526 NCAPD3P42695 1498 aa17.47■□□□□ 0.39
SMARCD1-207ENST00000549526 THOC2Q8NI27 1593 aaKnown RBP17.46■□□□□ 0.39
SMARCD1-207ENST00000549526 SMARCA2P51531 1590 aa17.34■□□□□ 0.37
SMARCD1-207ENST00000549526 OSCARQ8IYS5 282 aa17.3■□□□□ 0.36
SMARCD1-207ENST00000549526 AEBP2Q6ZN18 517 aaPredicted RBP17.29■□□□□ 0.36
SMARCD1-207ENST00000549526 ATAD2BQ9ULI0 1458 aa17.29■□□□□ 0.36
SMARCD1-207ENST00000549526 KIF21AQ7Z4S6 1674 aa17.26■□□□□ 0.35
SMARCD1-207ENST00000549526 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
SMARCD1-207ENST00000549526 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
SMARCD1-207ENST00000549526 HMGXB3Q12766 1538 aa17.22■□□□□ 0.35
SMARCD1-207ENST00000549526 PDS5BQ9NTI5 1447 aa17.19■□□□□ 0.34
SMARCD1-207ENST00000549526 TRHP20396 242 aaPredicted RBP17.11■□□□□ 0.33
SMARCD1-207ENST00000549526 BAZ1BQ9UIG0 1483 aaKnown RBP17.11■□□□□ 0.33
SMARCD1-207ENST00000549526 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
SMARCD1-207ENST00000549526 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
SMARCD1-207ENST00000549526 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
SMARCD1-207ENST00000549526 MRC2Q9UBG0 1479 aa17.06■□□□□ 0.32
SMARCD1-207ENST00000549526 SMARCA4P51532 1647 aa17.05■□□□□ 0.32
SMARCD1-207ENST00000549526 WDR62O43379 1518 aa17.02■□□□□ 0.32
SMARCD1-207ENST00000549526 CYB5RLQ6IPT4 315 aa16.98■□□□□ 0.31
SMARCD1-207ENST00000549526 ARHGEF11O15085 1522 aa16.93■□□□□ 0.3
SMARCD1-207ENST00000549526 CADPSQ9ULU8 1353 aa16.92■□□□□ 0.3
SMARCD1-207ENST00000549526 PEG3Q9GZU2 1588 aa16.85■□□□□ 0.29
SMARCD1-207ENST00000549526 CEP164Q9UPV0 1460 aa16.83■□□□□ 0.28
SMARCD1-207ENST00000549526 FANCD2Q9BXW9 1451 aa16.73■□□□□ 0.27
SMARCD1-207ENST00000549526 ARAP1Q96P48 1450 aa16.69■□□□□ 0.26
SMARCD1-207ENST00000549526 MROH2BQ7Z745 1585 aa16.66■□□□□ 0.26
SMARCD1-207ENST00000549526 ILDR1Q86SU0 546 aaPredicted RBP16.65■□□□□ 0.26
SMARCD1-207ENST00000549526 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.25
SMARCD1-207ENST00000549526 ZNF608Q9ULD9 1512 aaPredicted RBP16.6■□□□□ 0.25
SMARCD1-207ENST00000549526 FBLN2P98095 1184 aa16.54■□□□□ 0.24
SMARCD1-207ENST00000549526 CHD1O14646 1710 aa16.53■□□□□ 0.24
SMARCD1-207ENST00000549526 IFT140Q96RY7 1462 aa16.52■□□□□ 0.23
SMARCD1-207ENST00000549526 RSF1Q96T23 1441 aaPredicted RBP16.52■□□□□ 0.23
SMARCD1-207ENST00000549526 CFTRP13569 1480 aa16.51■□□□□ 0.23
SMARCD1-207ENST00000549526 WIZO95785 1651 aa16.45■□□□□ 0.22
SMARCD1-207ENST00000549526 EIF4G3O43432 1585 aaKnown RBP16.44■□□□□ 0.22
SMARCD1-207ENST00000549526 AQRO60306 1485 aaKnown RBP eCLIP16.37■□□□□ 0.21
SMARCD1-207ENST00000549526 TOPBP1Q92547 1522 aa16.3■□□□□ 0.2
SMARCD1-207ENST00000549526 PRDM2Q13029 1718 aa16.3■□□□□ 0.2
SMARCD1-207ENST00000549526 CLASP1Q7Z460 1538 aa16.25■□□□□ 0.19
SMARCD1-207ENST00000549526 CHMP7Q8WUX9 453 aaPredicted RBP16.23■□□□□ 0.19
SMARCD1-207ENST00000549526 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
SMARCD1-207ENST00000549526 TARBP1Q13395 1621 aaKnown RBP16.22■□□□□ 0.19
SMARCD1-207ENST00000549526 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
SMARCD1-207ENST00000549526 SYNJ1O43426 1573 aa16.2■□□□□ 0.18
SMARCD1-207ENST00000549526 KDM4FA0A1W2PPD8 638 aa16.19■□□□□ 0.18
SMARCD1-207ENST00000549526 DNMBPQ6XZF7 1577 aa16.15■□□□□ 0.18
SMARCD1-207ENST00000549526 TDRD9Q8NDG6 1382 aaKnown RBP16.13■□□□□ 0.17
SMARCD1-207ENST00000549526 SNAPC4Q5SXM2 1469 aa16.13■□□□□ 0.17
SMARCD1-207ENST00000549526 TOP2AP11388 1531 aaKnown RBP16.11■□□□□ 0.17
SMARCD1-207ENST00000549526 KIF13AQ9H1H9 1805 aa16.1■□□□□ 0.17
SMARCD1-207ENST00000549526 POLA1P09884 1462 aaPredicted RBP16.07■□□□□ 0.16
SMARCD1-207ENST00000549526 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
SMARCD1-207ENST00000549526 SOGA1O94964 1423 aa16.04■□□□□ 0.16
SMARCD1-207ENST00000549526 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
SMARCD1-207ENST00000549526 SYNJ2O15056 1496 aa16.02■□□□□ 0.15
SMARCD1-207ENST00000549526 CCDC88BA6NC98 1476 aa15.99■□□□□ 0.15
SMARCD1-207ENST00000549526 FAM69CQ0P6D2 419 aa15.98■□□□□ 0.15
SMARCD1-207ENST00000549526 ERCC6L2Q5T890 1561 aa15.98■□□□□ 0.15
SMARCD1-207ENST00000549526 GRIN2BQ13224 1484 aa15.96■□□□□ 0.14
SMARCD1-207ENST00000549526 WDR97A6NE52 1622 aa15.95■□□□□ 0.14
SMARCD1-207ENST00000549526 KDM6BO15054 1643 aa15.93■□□□□ 0.14
SMARCD1-207ENST00000549526 FBXO41Q8TF61 875 aa15.92■□□□□ 0.14
SMARCD1-207ENST00000549526 HECW2Q9P2P5 1572 aa15.88■□□□□ 0.13
SMARCD1-207ENST00000549526 FGD5Q6ZNL6 1462 aa15.86■□□□□ 0.13
SMARCD1-207ENST00000549526 CEP170Q5SW79 1584 aa15.86■□□□□ 0.13
SMARCD1-207ENST00000549526 PBRM1Q86U86 1689 aa15.86■□□□□ 0.13
SMARCD1-207ENST00000549526 ABCC10Q5T3U5 1492 aa15.85■□□□□ 0.13
SMARCD1-207ENST00000549526 NPM1P06748 294 aaKnown RBP eCLIP15.85■□□□□ 0.13
SMARCD1-207ENST00000549526 TSPOAP1O95153 1857 aa15.83■□□□□ 0.12
SMARCD1-207ENST00000549526 ADGRL1O94910 1474 aa15.81■□□□□ 0.12
SMARCD1-207ENST00000549526 DIP2BQ9P265 1576 aa15.77■□□□□ 0.11
SMARCD1-207ENST00000549526 LMTK3Q96Q04 1460 aa15.77■□□□□ 0.11
SMARCD1-207ENST00000549526 GRIN2AQ12879 1464 aa15.75■□□□□ 0.11
SMARCD1-207ENST00000549526 SHROOM2Q13796 1616 aa15.75■□□□□ 0.11
SMARCD1-207ENST00000549526 MAPKBP1O60336 1514 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms