RNA–Protein interactions for RNA: ENST00000549340.5

LETMD1-218, Transcript of LETM1 domain containing 1, humanhuman

TSL 5

Gene LETMD1, Length 818 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-218ENST00000549340 NISCHQ9Y2I1 1504 aa32.82■■■□□ 2.84
LETMD1-218ENST00000549340 CCDC180Q9P1Z9 1646 aa28.65■■■□□ 2.18
LETMD1-218ENST00000549340 ZCCHC6Q5VYS8 1495 aaKnown RBP27.64■■■□□ 2.01
LETMD1-218ENST00000549340 DCAF1Q9Y4B6 1507 aa27.25■■□□□ 1.95
LETMD1-218ENST00000549340 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
LETMD1-218ENST00000549340 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
LETMD1-218ENST00000549340 SHROOM4Q9ULL8 1493 aa26.7■■□□□ 1.87
LETMD1-218ENST00000549340 ABCC9O60706 1549 aa26.65■■□□□ 1.86
LETMD1-218ENST00000549340 NACADO15069 1562 aa26.58■■□□□ 1.85
LETMD1-218ENST00000549340 RB1CC1Q8TDY2 1594 aa26.28■■□□□ 1.8
LETMD1-218ENST00000549340 SCRIBQ14160 1630 aa26.2■■□□□ 1.78
LETMD1-218ENST00000549340 SUPT5HO00267 1087 aaKnown RBP25.81■■□□□ 1.72
LETMD1-218ENST00000549340 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
LETMD1-218ENST00000549340 RSF1Q96T23 1441 aaPredicted RBP25.49■■□□□ 1.67
LETMD1-218ENST00000549340 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
LETMD1-218ENST00000549340 CECR2Q9BXF3 1484 aa25.39■■□□□ 1.65
LETMD1-218ENST00000549340 BAZ1AQ9NRL2 1556 aaPredicted RBP25.35■■□□□ 1.65
LETMD1-218ENST00000549340 MROH2BQ7Z745 1585 aa25.31■■□□□ 1.64
LETMD1-218ENST00000549340 SMARCA4P51532 1647 aa25.21■■□□□ 1.63
LETMD1-218ENST00000549340 WIZO95785 1651 aa25.15■■□□□ 1.62
LETMD1-218ENST00000549340 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
LETMD1-218ENST00000549340 TOP2AP11388 1531 aaKnown RBP24.95■■□□□ 1.58
LETMD1-218ENST00000549340 PEG3Q9GZU2 1588 aa24.94■■□□□ 1.58
LETMD1-218ENST00000549340 CHIC1Q5VXU3 224 aa24.91■■□□□ 1.58
LETMD1-218ENST00000549340 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
LETMD1-218ENST00000549340 ATAD2BQ9ULI0 1458 aa24.69■■□□□ 1.54
LETMD1-218ENST00000549340 EIF4G1Q04637 1599 aaKnown RBP24.64■■□□□ 1.54
LETMD1-218ENST00000549340 AEBP2Q6ZN18 517 aaPredicted RBP24.64■■□□□ 1.54
LETMD1-218ENST00000549340 CCDC88BA6NC98 1476 aa24.61■■□□□ 1.53
LETMD1-218ENST00000549340 BAZ1BQ9UIG0 1483 aaKnown RBP24.56■■□□□ 1.52
LETMD1-218ENST00000549340 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
LETMD1-218ENST00000549340 NCAPD3P42695 1498 aa24.47■■□□□ 1.51
LETMD1-218ENST00000549340 TRIM41Q8WV44 630 aa24.32■■□□□ 1.48
LETMD1-218ENST00000549340 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
LETMD1-218ENST00000549340 ABCC8Q09428 1581 aa24.14■■□□□ 1.45
LETMD1-218ENST00000549340 PRDM2Q13029 1718 aa24.06■■□□□ 1.44
LETMD1-218ENST00000549340 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.43
LETMD1-218ENST00000549340 CFTRP13569 1480 aa23.97■■□□□ 1.43
LETMD1-218ENST00000549340 SYNJ1O43426 1573 aa23.9■■□□□ 1.42
LETMD1-218ENST00000549340 EEA1Q15075 1411 aa23.87■■□□□ 1.41
LETMD1-218ENST00000549340 LOC105371045A0A1W2PR82 267 aa23.87■■□□□ 1.41
LETMD1-218ENST00000549340 BIVM-ERCC5R4GMW8 1640 aa23.87■■□□□ 1.41
LETMD1-218ENST00000549340 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
LETMD1-218ENST00000549340 CADPSQ9ULU8 1353 aa23.81■■□□□ 1.4
LETMD1-218ENST00000549340 FAM9AQ8IZU1 332 aaPredicted RBP23.77■■□□□ 1.4
LETMD1-218ENST00000549340 SOGA1O94964 1423 aa23.7■■□□□ 1.38
LETMD1-218ENST00000549340 CUX1P39880 1505 aa23.68■■□□□ 1.38
LETMD1-218ENST00000549340 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
LETMD1-218ENST00000549340 RUSC2Q8N2Y8 1516 aa23.59■■□□□ 1.37
LETMD1-218ENST00000549340 CSRNP3Q8WYN3 585 aa23.58■■□□□ 1.37
LETMD1-218ENST00000549340 FANCD2Q9BXW9 1451 aa23.56■■□□□ 1.36
LETMD1-218ENST00000549340 KIF21BO75037 1637 aa23.55■■□□□ 1.36
LETMD1-218ENST00000549340 GOLGA3Q08378 1498 aa23.49■■□□□ 1.35
LETMD1-218ENST00000549340 CEP164Q9UPV0 1460 aa23.48■■□□□ 1.35
LETMD1-218ENST00000549340 NESP48681 1621 aa23.47■■□□□ 1.35
LETMD1-218ENST00000549340 DNMBPQ6XZF7 1577 aa23.45■■□□□ 1.34
LETMD1-218ENST00000549340 TNIKQ9UKE5 1360 aa23.45■■□□□ 1.34
LETMD1-218ENST00000549340 KIF27Q86VH2 1401 aa23.39■■□□□ 1.33
LETMD1-218ENST00000549340 PDS5BQ9NTI5 1447 aa23.39■■□□□ 1.33
LETMD1-218ENST00000549340 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
LETMD1-218ENST00000549340 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
LETMD1-218ENST00000549340 TOPBP1Q92547 1522 aa23.34■■□□□ 1.33
LETMD1-218ENST00000549340 EHMT2Q96KQ7 1210 aa23.33■■□□□ 1.33
LETMD1-218ENST00000549340 KIF21AQ7Z4S6 1674 aa23.31■■□□□ 1.32
LETMD1-218ENST00000549340 DNAJC5BQ9UF47 199 aa23.3■■□□□ 1.32
LETMD1-218ENST00000549340 CEP162Q5TB80 1403 aa23.3■■□□□ 1.32
LETMD1-218ENST00000549340 PRXQ9BXM0 1461 aa23.3■■□□□ 1.32
LETMD1-218ENST00000549340 URB2Q14146 1524 aaKnown RBP23.24■■□□□ 1.31
LETMD1-218ENST00000549340 UBTFP17480 764 aaKnown RBP23.24■■□□□ 1.31
LETMD1-218ENST00000549340 CUX2O14529 1486 aa23.24■■□□□ 1.31
LETMD1-218ENST00000549340 RAPGEF2Q9Y4G8 1499 aa23.24■■□□□ 1.31
LETMD1-218ENST00000549340 POLA1P09884 1462 aaPredicted RBP23.23■■□□□ 1.31
LETMD1-218ENST00000549340 ABCA10Q8WWZ4 1543 aa23.22■■□□□ 1.31
LETMD1-218ENST00000549340 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
LETMD1-218ENST00000549340 IGF1RP08069 1367 aa23.11■■□□□ 1.29
LETMD1-218ENST00000549340 RAD54L2Q9Y4B4 1467 aa23.1■■□□□ 1.29
LETMD1-218ENST00000549340 TRIM26Q12899 539 aaPredicted RBP23.09■■□□□ 1.29
LETMD1-218ENST00000549340 MRC2Q9UBG0 1479 aa23.09■■□□□ 1.29
LETMD1-218ENST00000549340 CLIP1P30622 1438 aa23.08■■□□□ 1.28
LETMD1-218ENST00000549340 CUL7Q14999 1698 aa23.06■■□□□ 1.28
LETMD1-218ENST00000549340 ABCA5Q8WWZ7 1642 aa23.04■■□□□ 1.28
LETMD1-218ENST00000549340 TARBP1Q13395 1621 aaKnown RBP23.02■■□□□ 1.28
LETMD1-218ENST00000549340 PCGF6Q9BYE7 350 aa23.02■■□□□ 1.28
LETMD1-218ENST00000549340 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
LETMD1-218ENST00000549340 WDR62O43379 1518 aa22.99■■□□□ 1.27
LETMD1-218ENST00000549340 VPS8Q8N3P4 1428 aa22.93■■□□□ 1.26
LETMD1-218ENST00000549340 GAPVD1Q14C86 1478 aa22.91■■□□□ 1.26
LETMD1-218ENST00000549340 THOC2Q8NI27 1593 aaKnown RBP22.88■■□□□ 1.25
LETMD1-218ENST00000549340 PBRM1Q86U86 1689 aa22.87■■□□□ 1.25
LETMD1-218ENST00000549340 CTTNBP2Q8WZ74 1663 aa22.85■■□□□ 1.25
LETMD1-218ENST00000549340 ERCC6Q03468 1493 aa22.85■■□□□ 1.25
LETMD1-218ENST00000549340 IFT140Q96RY7 1462 aa22.85■■□□□ 1.25
LETMD1-218ENST00000549340 ARAP1Q96P48 1450 aa22.84■■□□□ 1.25
LETMD1-218ENST00000549340 TDRD9Q8NDG6 1382 aaKnown RBP22.82■■□□□ 1.24
LETMD1-218ENST00000549340 ARHGAP35Q9NRY4 1499 aa22.79■■□□□ 1.24
LETMD1-218ENST00000549340 EFCAB5A4FU69 1503 aa22.72■■□□□ 1.23
LETMD1-218ENST00000549340 GRIN2BQ13224 1484 aa22.72■■□□□ 1.23
LETMD1-218ENST00000549340 ADAMTS12P58397 1594 aa22.72■■□□□ 1.23
LETMD1-218ENST00000549340 FHAD1B1AJZ9 1412 aa22.69■■□□□ 1.22
LETMD1-218ENST00000549340 RANGAP1P46060 587 aaPredicted RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms