RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 NISCHQ9Y2I1 1504 aa22.98■■□□□ 1.27
SMARCD1-206ENST00000549274 CCDC180Q9P1Z9 1646 aa20.39■□□□□ 0.86
SMARCD1-206ENST00000549274 AEBP2Q6ZN18 517 aaPredicted RBP20■□□□□ 0.79
SMARCD1-206ENST00000549274 ABCC9O60706 1549 aa19.42■□□□□ 0.7
SMARCD1-206ENST00000549274 ZCCHC6Q5VYS8 1495 aaKnown RBP19.22■□□□□ 0.67
SMARCD1-206ENST00000549274 DCAF1Q9Y4B6 1507 aa19.13■□□□□ 0.65
SMARCD1-206ENST00000549274 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
SMARCD1-206ENST00000549274 NACADO15069 1562 aa19.07■□□□□ 0.64
SMARCD1-206ENST00000549274 RB1CC1Q8TDY2 1594 aa19■□□□□ 0.63
SMARCD1-206ENST00000549274 DCAF8L2P0C7V8 631 aa18.95■□□□□ 0.62
SMARCD1-206ENST00000549274 CHIC1Q5VXU3 224 aa18.71■□□□□ 0.59
SMARCD1-206ENST00000549274 UNC13AQ9UPW8 1703 aa18.49■□□□□ 0.55
SMARCD1-206ENST00000549274 SCRIBQ14160 1630 aa18.49■□□□□ 0.55
SMARCD1-206ENST00000549274 SHROOM4Q9ULL8 1493 aa18.35■□□□□ 0.53
SMARCD1-206ENST00000549274 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
SMARCD1-206ENST00000549274 PABPN1Q86U42 306 aaKnown RBP eCLIP18.15■□□□□ 0.5
SMARCD1-206ENST00000549274 BAZ1AQ9NRL2 1556 aaPredicted RBP17.85■□□□□ 0.45
SMARCD1-206ENST00000549274 EIF4G1Q04637 1599 aaKnown RBP17.83■□□□□ 0.44
SMARCD1-206ENST00000549274 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
SMARCD1-206ENST00000549274 CECR2Q9BXF3 1484 aa17.74■□□□□ 0.43
SMARCD1-206ENST00000549274 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
SMARCD1-206ENST00000549274 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
SMARCD1-206ENST00000549274 CC2D2AQ9P2K1 1620 aa17.64■□□□□ 0.41
SMARCD1-206ENST00000549274 PEG3Q9GZU2 1588 aa17.63■□□□□ 0.41
SMARCD1-206ENST00000549274 RSF1Q96T23 1441 aaPredicted RBP17.58■□□□□ 0.41
SMARCD1-206ENST00000549274 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
SMARCD1-206ENST00000549274 NCAPD3P42695 1498 aa17.53■□□□□ 0.4
SMARCD1-206ENST00000549274 HMGXB3Q12766 1538 aa17.52■□□□□ 0.4
SMARCD1-206ENST00000549274 WIZO95785 1651 aa17.48■□□□□ 0.39
SMARCD1-206ENST00000549274 BAZ1BQ9UIG0 1483 aaKnown RBP17.47■□□□□ 0.39
SMARCD1-206ENST00000549274 TOP2AP11388 1531 aaKnown RBP17.41■□□□□ 0.38
SMARCD1-206ENST00000549274 DNAJC5BQ9UF47 199 aa17.38■□□□□ 0.37
SMARCD1-206ENST00000549274 SUPT5HO00267 1087 aaKnown RBP17.34■□□□□ 0.37
SMARCD1-206ENST00000549274 SENP3Q9H4L4 574 aaPredicted RBP17.2■□□□□ 0.34
SMARCD1-206ENST00000549274 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
SMARCD1-206ENST00000549274 LAMC3Q9Y6N6 1575 aa17.07■□□□□ 0.32
SMARCD1-206ENST00000549274 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.32
SMARCD1-206ENST00000549274 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
SMARCD1-206ENST00000549274 CFTRP13569 1480 aa17■□□□□ 0.31
SMARCD1-206ENST00000549274 PDS5BQ9NTI5 1447 aa16.94■□□□□ 0.3
SMARCD1-206ENST00000549274 PHF23Q9BUL5 403 aaPredicted RBP16.88■□□□□ 0.29
SMARCD1-206ENST00000549274 NESP48681 1621 aa16.87■□□□□ 0.29
SMARCD1-206ENST00000549274 ERCC6Q03468 1493 aa16.82■□□□□ 0.28
SMARCD1-206ENST00000549274 FANCD2Q9BXW9 1451 aa16.82■□□□□ 0.28
SMARCD1-206ENST00000549274 CEP164Q9UPV0 1460 aa16.81■□□□□ 0.28
SMARCD1-206ENST00000549274 KIF21AQ7Z4S6 1674 aa16.78■□□□□ 0.28
SMARCD1-206ENST00000549274 ABCC8Q09428 1581 aa16.75■□□□□ 0.27
SMARCD1-206ENST00000549274 MRC2Q9UBG0 1479 aa16.7■□□□□ 0.26
SMARCD1-206ENST00000549274 DNMBPQ6XZF7 1577 aa16.64■□□□□ 0.25
SMARCD1-206ENST00000549274 THOC2Q8NI27 1593 aaKnown RBP16.64■□□□□ 0.25
SMARCD1-206ENST00000549274 WDR62O43379 1518 aa16.63■□□□□ 0.25
SMARCD1-206ENST00000549274 WRNQ14191 1432 aaPredicted RBP eCLIP16.62■□□□□ 0.25
SMARCD1-206ENST00000549274 TOPBP1Q92547 1522 aa16.59■□□□□ 0.25
SMARCD1-206ENST00000549274 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
SMARCD1-206ENST00000549274 TOP2BQ02880 1626 aa16.58■□□□□ 0.24
SMARCD1-206ENST00000549274 BIVM-ERCC5R4GMW8 1640 aa16.58■□□□□ 0.24
SMARCD1-206ENST00000549274 CUX2O14529 1486 aa16.56■□□□□ 0.24
SMARCD1-206ENST00000549274 CUX1P39880 1505 aa16.55■□□□□ 0.24
SMARCD1-206ENST00000549274 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
SMARCD1-206ENST00000549274 FGD5Q6ZNL6 1462 aa16.47■□□□□ 0.23
SMARCD1-206ENST00000549274 POLA1P09884 1462 aaPredicted RBP16.46■□□□□ 0.23
SMARCD1-206ENST00000549274 IFT140Q96RY7 1462 aa16.46■□□□□ 0.23
SMARCD1-206ENST00000549274 TRIM41Q8WV44 630 aa16.45■□□□□ 0.22
SMARCD1-206ENST00000549274 WDR97A6NE52 1622 aa16.44■□□□□ 0.22
SMARCD1-206ENST00000549274 SOGA1O94964 1423 aa16.41■□□□□ 0.22
SMARCD1-206ENST00000549274 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
SMARCD1-206ENST00000549274 ABCA10Q8WWZ4 1543 aa16.37■□□□□ 0.21
SMARCD1-206ENST00000549274 RAD54L2Q9Y4B4 1467 aa16.31■□□□□ 0.2
SMARCD1-206ENST00000549274 EEA1Q15075 1411 aa16.29■□□□□ 0.2
SMARCD1-206ENST00000549274 KIF27Q86VH2 1401 aa16.29■□□□□ 0.2
SMARCD1-206ENST00000549274 ABCA5Q8WWZ7 1642 aa16.27■□□□□ 0.19
SMARCD1-206ENST00000549274 EIF4G3O43432 1585 aaKnown RBP16.26■□□□□ 0.19
SMARCD1-206ENST00000549274 GAPVD1Q14C86 1478 aa16.24■□□□□ 0.19
SMARCD1-206ENST00000549274 ERICH3Q5RHP9 1530 aa16.22■□□□□ 0.19
SMARCD1-206ENST00000549274 GRIN2BQ13224 1484 aa16.22■□□□□ 0.19
SMARCD1-206ENST00000549274 PBRM1Q86U86 1689 aa16.21■□□□□ 0.19
SMARCD1-206ENST00000549274 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
SMARCD1-206ENST00000549274 TDRD9Q8NDG6 1382 aaKnown RBP16.2■□□□□ 0.18
SMARCD1-206ENST00000549274 CUL7Q14999 1698 aa16.18■□□□□ 0.18
SMARCD1-206ENST00000549274 AQRO60306 1485 aaKnown RBP eCLIP16.17■□□□□ 0.184e-7■■■■■ 32.7
SMARCD1-206ENST00000549274 MAGI1Q96QZ7 1491 aaPredicted RBP16.17■□□□□ 0.18
SMARCD1-206ENST00000549274 FHAD1B1AJZ9 1412 aa16.1■□□□□ 0.17
SMARCD1-206ENST00000549274 SNAPC4Q5SXM2 1469 aa16.1■□□□□ 0.17
SMARCD1-206ENST00000549274 FOXD1Q16676 465 aa16.09■□□□□ 0.17
SMARCD1-206ENST00000549274 IGF1RP08069 1367 aa16.09■□□□□ 0.17
SMARCD1-206ENST00000549274 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
SMARCD1-206ENST00000549274 CSRNP3Q8WYN3 585 aa16.08■□□□□ 0.16
SMARCD1-206ENST00000549274 SYNJ2O15056 1496 aa16.07■□□□□ 0.16
SMARCD1-206ENST00000549274 RUSC2Q8N2Y8 1516 aa16.06■□□□□ 0.16
SMARCD1-206ENST00000549274 CARMIL1Q5VZK9 1371 aa16.05■□□□□ 0.16
SMARCD1-206ENST00000549274 POTEDQ86YR6 584 aa16.03■□□□□ 0.16
SMARCD1-206ENST00000549274 KIF21BO75037 1637 aa16.02■□□□□ 0.16
SMARCD1-206ENST00000549274 CHMP7Q8WUX9 453 aaPredicted RBP16.02■□□□□ 0.16
SMARCD1-206ENST00000549274 PRXQ9BXM0 1461 aa16.02■□□□□ 0.15
SMARCD1-206ENST00000549274 RAPGEF2Q9Y4G8 1499 aa16.02■□□□□ 0.15
SMARCD1-206ENST00000549274 GRIN2AQ12879 1464 aa15.99■□□□□ 0.15
SMARCD1-206ENST00000549274 CHD1O14646 1710 aa15.99■□□□□ 0.15
SMARCD1-206ENST00000549274 FAM9AQ8IZU1 332 aaPredicted RBP15.97■□□□□ 0.15
SMARCD1-206ENST00000549274 GOLGA3Q08378 1498 aa15.96■□□□□ 0.14
SMARCD1-206ENST00000549274 FBLN2P98095 1184 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms