RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 NISCHQ9Y2I1 1504 aa34.7■■■■□ 3.14
CDX2-202ENST00000548877 ABCC9O60706 1549 aa31.59■■■□□ 2.65
CDX2-202ENST00000548877 CCDC180Q9P1Z9 1646 aa31.34■■■□□ 2.61
CDX2-202ENST00000548877 DNAJC5BQ9UF47 199 aa30.03■■■□□ 2.4
CDX2-202ENST00000548877 RB1CC1Q8TDY2 1594 aa29.98■■■□□ 2.39
CDX2-202ENST00000548877 NACADO15069 1562 aa29.72■■■□□ 2.35
CDX2-202ENST00000548877 PABPN1Q86U42 306 aaKnown RBP eCLIP29.31■■■□□ 2.28
CDX2-202ENST00000548877 UNC13AQ9UPW8 1703 aa29.31■■■□□ 2.28
CDX2-202ENST00000548877 MYO15BQ96JP2 1530 aa29.26■■■□□ 2.27
CDX2-202ENST00000548877 DCAF8L2P0C7V8 631 aa29.25■■■□□ 2.27
CDX2-202ENST00000548877 BICRAQ9NZM4 1560 aa29.14■■■□□ 2.26
CDX2-202ENST00000548877 SHROOM4Q9ULL8 1493 aa28.78■■■□□ 2.2
CDX2-202ENST00000548877 DCAF1Q9Y4B6 1507 aa28.72■■■□□ 2.19
CDX2-202ENST00000548877 ZCCHC6Q5VYS8 1495 aaKnown RBP28.67■■■□□ 2.18
CDX2-202ENST00000548877 CC2D2AQ9P2K1 1620 aa28.58■■■□□ 2.17
CDX2-202ENST00000548877 CECR2Q9BXF3 1484 aa28.53■■■□□ 2.16
CDX2-202ENST00000548877 EIF4G1Q04637 1599 aaKnown RBP28.43■■■□□ 2.14
CDX2-202ENST00000548877 SCRIBQ14160 1630 aa28.4■■■□□ 2.14
CDX2-202ENST00000548877 DNAJC5Q9H3Z4 198 aa27.91■■■□□ 2.06
CDX2-202ENST00000548877 CUX2O14529 1486 aa27.49■■□□□ 1.99
CDX2-202ENST00000548877 NCAPD3P42695 1498 aa27.45■■□□□ 1.99
CDX2-202ENST00000548877 ERCC6Q03468 1493 aa27.28■■□□□ 1.96
CDX2-202ENST00000548877 ATAD2BQ9ULI0 1458 aa27.27■■□□□ 1.96
CDX2-202ENST00000548877 HMGXB3Q12766 1538 aa27.2■■□□□ 1.94
CDX2-202ENST00000548877 SMARCA2P51531 1590 aa27.18■■□□□ 1.94
CDX2-202ENST00000548877 SMARCA4P51532 1647 aa27.12■■□□□ 1.93
CDX2-202ENST00000548877 NESP48681 1621 aa27.04■■□□□ 1.92
CDX2-202ENST00000548877 PEG3Q9GZU2 1588 aa26.95■■□□□ 1.9
CDX2-202ENST00000548877 BAZ1AQ9NRL2 1556 aaPredicted RBP26.95■■□□□ 1.9
CDX2-202ENST00000548877 BAZ1BQ9UIG0 1483 aaKnown RBP26.93■■□□□ 1.9
CDX2-202ENST00000548877 THOC2Q8NI27 1593 aaKnown RBP26.9■■□□□ 1.9
CDX2-202ENST00000548877 LAMC3Q9Y6N6 1575 aa26.87■■□□□ 1.89
CDX2-202ENST00000548877 PDS5BQ9NTI5 1447 aa26.7■■□□□ 1.86
CDX2-202ENST00000548877 KIF21AQ7Z4S6 1674 aa26.7■■□□□ 1.86
CDX2-202ENST00000548877 MROH2BQ7Z745 1585 aa26.69■■□□□ 1.86
CDX2-202ENST00000548877 CADPSQ9ULU8 1353 aa26.56■■□□□ 1.84
CDX2-202ENST00000548877 MRC2Q9UBG0 1479 aa26.49■■□□□ 1.83
CDX2-202ENST00000548877 WDR62O43379 1518 aa26.46■■□□□ 1.83
CDX2-202ENST00000548877 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
CDX2-202ENST00000548877 WIZO95785 1651 aa26.33■■□□□ 1.81
CDX2-202ENST00000548877 CEP164Q9UPV0 1460 aa26.28■■□□□ 1.8
CDX2-202ENST00000548877 FANCD2Q9BXW9 1451 aa26.23■■□□□ 1.79
CDX2-202ENST00000548877 CFTRP13569 1480 aa26.19■■□□□ 1.78
CDX2-202ENST00000548877 OSCARQ8IYS5 282 aa26.12■■□□□ 1.77
CDX2-202ENST00000548877 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
CDX2-202ENST00000548877 TOP2AP11388 1531 aaKnown RBP26.01■■□□□ 1.75
CDX2-202ENST00000548877 RSF1Q96T23 1441 aaPredicted RBP26.01■■□□□ 1.75
CDX2-202ENST00000548877 PRDM2Q13029 1718 aa25.9■■□□□ 1.74
CDX2-202ENST00000548877 RIMBP3CA6NJZ7 1639 aa25.81■■□□□ 1.72
CDX2-202ENST00000548877 RIMBP3BA6NNM3 1639 aa25.81■■□□□ 1.72
CDX2-202ENST00000548877 RIMBP3Q9UFD9 1639 aa25.81■■□□□ 1.72
CDX2-202ENST00000548877 IFT140Q96RY7 1462 aa25.8■■□□□ 1.72
CDX2-202ENST00000548877 ZNF608Q9ULD9 1512 aaPredicted RBP25.76■■□□□ 1.71
CDX2-202ENST00000548877 CCDC88BA6NC98 1476 aa25.71■■□□□ 1.71
CDX2-202ENST00000548877 ARHGEF11O15085 1522 aa25.7■■□□□ 1.7
CDX2-202ENST00000548877 TOPBP1Q92547 1522 aa25.69■■□□□ 1.7
CDX2-202ENST00000548877 ABCC8Q09428 1581 aa25.67■■□□□ 1.7
CDX2-202ENST00000548877 EIF4G3O43432 1585 aaKnown RBP25.61■■□□□ 1.69
CDX2-202ENST00000548877 DNMBPQ6XZF7 1577 aa25.57■■□□□ 1.68
CDX2-202ENST00000548877 TARBP1Q13395 1621 aaKnown RBP25.52■■□□□ 1.68
CDX2-202ENST00000548877 CHD1O14646 1710 aa25.49■■□□□ 1.67
CDX2-202ENST00000548877 CYB5RLQ6IPT4 315 aa25.47■■□□□ 1.67
CDX2-202ENST00000548877 AQRO60306 1485 aaKnown RBP eCLIP25.47■■□□□ 1.67
CDX2-202ENST00000548877 ARAP1Q96P48 1450 aa25.42■■□□□ 1.66
CDX2-202ENST00000548877 POLA1P09884 1462 aaPredicted RBP25.4■■□□□ 1.66
CDX2-202ENST00000548877 WDR97A6NE52 1622 aa25.3■■□□□ 1.64
CDX2-202ENST00000548877 FBLN2P98095 1184 aa25.29■■□□□ 1.64
CDX2-202ENST00000548877 RAD54L2Q9Y4B4 1467 aa25.28■■□□□ 1.64
CDX2-202ENST00000548877 TRHP20396 242 aaPredicted RBP25.27■■□□□ 1.64
CDX2-202ENST00000548877 SOGA1O94964 1423 aa25.27■■□□□ 1.64
CDX2-202ENST00000548877 CLASP1Q7Z460 1538 aa25.24■■□□□ 1.63
CDX2-202ENST00000548877 TDRD9Q8NDG6 1382 aaKnown RBP25.24■■□□□ 1.63
CDX2-202ENST00000548877 SNAPC4Q5SXM2 1469 aa25.2■■□□□ 1.62
CDX2-202ENST00000548877 MAGI1Q96QZ7 1491 aaPredicted RBP25.17■■□□□ 1.62
CDX2-202ENST00000548877 FGD5Q6ZNL6 1462 aa25.16■■□□□ 1.62
CDX2-202ENST00000548877 SYNJ1O43426 1573 aa25.15■■□□□ 1.62
CDX2-202ENST00000548877 GRIN2BQ13224 1484 aa25.11■■□□□ 1.61
CDX2-202ENST00000548877 CHMP7Q8WUX9 453 aaPredicted RBP25.11■■□□□ 1.61
CDX2-202ENST00000548877 CUX1P39880 1505 aa25.1■■□□□ 1.61
CDX2-202ENST00000548877 SYNJ2O15056 1496 aa25.09■■□□□ 1.61
CDX2-202ENST00000548877 PBRM1Q86U86 1689 aa24.97■■□□□ 1.59
CDX2-202ENST00000548877 GAPVD1Q14C86 1478 aa24.96■■□□□ 1.59
CDX2-202ENST00000548877 ABCA10Q8WWZ4 1543 aa24.91■■□□□ 1.58
CDX2-202ENST00000548877 ABCA5Q8WWZ7 1642 aa24.9■■□□□ 1.58
CDX2-202ENST00000548877 AEBP2Q6ZN18 517 aaPredicted RBP24.82■■□□□ 1.56
CDX2-202ENST00000548877 GRIN2AQ12879 1464 aa24.78■■□□□ 1.56
CDX2-202ENST00000548877 NUP160Q12769 1436 aa24.76■■□□□ 1.55
CDX2-202ENST00000548877 ERCC6L2Q5T890 1561 aa24.75■■□□□ 1.55
CDX2-202ENST00000548877 ADAMTS12P58397 1594 aa24.72■■□□□ 1.55
CDX2-202ENST00000548877 CEP170Q5SW79 1584 aa24.71■■□□□ 1.55
CDX2-202ENST00000548877 SHROOM2Q13796 1616 aa24.71■■□□□ 1.55
CDX2-202ENST00000548877 WRNQ14191 1432 aaPredicted RBP eCLIP24.7■■□□□ 1.55
CDX2-202ENST00000548877 FHAD1B1AJZ9 1412 aa24.65■■□□□ 1.54
CDX2-202ENST00000548877 BIVM-ERCC5R4GMW8 1640 aa24.63■■□□□ 1.53
CDX2-202ENST00000548877 TOP2BQ02880 1626 aa24.61■■□□□ 1.53
CDX2-202ENST00000548877 ERICH3Q5RHP9 1530 aa24.6■■□□□ 1.53
CDX2-202ENST00000548877 KIF13AQ9H1H9 1805 aa24.56■■□□□ 1.52
CDX2-202ENST00000548877 PRG4Q92954 1404 aaPredicted RBP24.48■■□□□ 1.51
CDX2-202ENST00000548877 JPH4Q96JJ6 628 aa24.46■■□□□ 1.51
CDX2-202ENST00000548877 SUPT5HO00267 1087 aaKnown RBP24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms