RNA–Protein interactions for RNA: ENST00000548817.1

TROAP-208, Transcript of trophinin associated protein, humanhuman

TSL 3

Gene TROAP, Length 480 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TROAP-208ENST00000548817 NISCHQ9Y2I1 1504 aa21.77■■□□□ 1.08
TROAP-208ENST00000548817 ABCC9O60706 1549 aa20.33■□□□□ 0.85
TROAP-208ENST00000548817 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
TROAP-208ENST00000548817 DNAJC5BQ9UF47 199 aa19.56■□□□□ 0.72
TROAP-208ENST00000548817 RB1CC1Q8TDY2 1594 aa19.19■□□□□ 0.66
TROAP-208ENST00000548817 NACADO15069 1562 aa18.93■□□□□ 0.62
TROAP-208ENST00000548817 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
TROAP-208ENST00000548817 UNC13AQ9UPW8 1703 aa18.69■□□□□ 0.58
TROAP-208ENST00000548817 BICRAQ9NZM4 1560 aa18.61■□□□□ 0.57
TROAP-208ENST00000548817 MYO15BQ96JP2 1530 aa18.53■□□□□ 0.56
TROAP-208ENST00000548817 DNAJC5Q9H3Z4 198 aa18.52■□□□□ 0.56
TROAP-208ENST00000548817 DCAF8L2P0C7V8 631 aa18.47■□□□□ 0.55
TROAP-208ENST00000548817 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.54
TROAP-208ENST00000548817 CECR2Q9BXF3 1484 aa18.43■□□□□ 0.54
TROAP-208ENST00000548817 CC2D2AQ9P2K1 1620 aa18.38■□□□□ 0.53
TROAP-208ENST00000548817 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.51
TROAP-208ENST00000548817 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
TROAP-208ENST00000548817 SCRIBQ14160 1630 aa17.94■□□□□ 0.46
TROAP-208ENST00000548817 ZCCHC6Q5VYS8 1495 aaKnown RBP17.92■□□□□ 0.46
TROAP-208ENST00000548817 CUX2O14529 1486 aa17.9■□□□□ 0.46
TROAP-208ENST00000548817 ERCC6Q03468 1493 aa17.64■□□□□ 0.41
TROAP-208ENST00000548817 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
TROAP-208ENST00000548817 TRIM41Q8WV44 630 aa17.35■□□□□ 0.37
TROAP-208ENST00000548817 THOC2Q8NI27 1593 aaKnown RBP17.32■□□□□ 0.36
TROAP-208ENST00000548817 HMGXB3Q12766 1538 aa17.3■□□□□ 0.36
TROAP-208ENST00000548817 ATAD2BQ9ULI0 1458 aa17.28■□□□□ 0.36
TROAP-208ENST00000548817 NESP48681 1621 aa17.27■□□□□ 0.36
TROAP-208ENST00000548817 SMARCA2P51531 1590 aa17.25■□□□□ 0.35
TROAP-208ENST00000548817 LAMC3Q9Y6N6 1575 aa17.19■□□□□ 0.34
TROAP-208ENST00000548817 SMARCA4P51532 1647 aa17.11■□□□□ 0.33
TROAP-208ENST00000548817 PDS5BQ9NTI5 1447 aa17.09■□□□□ 0.33
TROAP-208ENST00000548817 KIF21AQ7Z4S6 1674 aa17.08■□□□□ 0.32
TROAP-208ENST00000548817 BAZ1BQ9UIG0 1483 aaKnown RBP17.08■□□□□ 0.32
TROAP-208ENST00000548817 PEG3Q9GZU2 1588 aa17.02■□□□□ 0.31
TROAP-208ENST00000548817 BAZ1AQ9NRL2 1556 aaPredicted RBP16.99■□□□□ 0.31
TROAP-208ENST00000548817 MRC2Q9UBG0 1479 aa16.96■□□□□ 0.31
TROAP-208ENST00000548817 WDR62O43379 1518 aa16.96■□□□□ 0.3
TROAP-208ENST00000548817 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
TROAP-208ENST00000548817 CADPSQ9ULU8 1353 aa16.87■□□□□ 0.29
TROAP-208ENST00000548817 CEP164Q9UPV0 1460 aa16.77■□□□□ 0.28
TROAP-208ENST00000548817 RIMBP3CA6NJZ7 1639 aa16.75■□□□□ 0.27
TROAP-208ENST00000548817 RIMBP3BA6NNM3 1639 aa16.75■□□□□ 0.27
TROAP-208ENST00000548817 RIMBP3Q9UFD9 1639 aa16.75■□□□□ 0.27
TROAP-208ENST00000548817 MROH2BQ7Z745 1585 aa16.72■□□□□ 0.27
TROAP-208ENST00000548817 FANCD2Q9BXW9 1451 aa16.67■□□□□ 0.26
TROAP-208ENST00000548817 ARHGEF11O15085 1522 aa16.65■□□□□ 0.26
TROAP-208ENST00000548817 CFTRP13569 1480 aa16.56■□□□□ 0.24
TROAP-208ENST00000548817 URB2Q14146 1524 aaKnown RBP16.55■□□□□ 0.24
TROAP-208ENST00000548817 AEBP2Q6ZN18 517 aaPredicted RBP16.51■□□□□ 0.23
TROAP-208ENST00000548817 TRHP20396 242 aaPredicted RBP16.5■□□□□ 0.23
TROAP-208ENST00000548817 CYB5RLQ6IPT4 315 aa16.49■□□□□ 0.23
TROAP-208ENST00000548817 IFT140Q96RY7 1462 aa16.47■□□□□ 0.23
TROAP-208ENST00000548817 WIZO95785 1651 aa16.46■□□□□ 0.23
TROAP-208ENST00000548817 ARAP1Q96P48 1450 aa16.43■□□□□ 0.22
TROAP-208ENST00000548817 ZNF608Q9ULD9 1512 aaPredicted RBP16.42■□□□□ 0.22
TROAP-208ENST00000548817 RSF1Q96T23 1441 aaPredicted RBP16.41■□□□□ 0.22
TROAP-208ENST00000548817 PRDM2Q13029 1718 aa16.38■□□□□ 0.21
TROAP-208ENST00000548817 EIF4G3O43432 1585 aaKnown RBP16.35■□□□□ 0.21
TROAP-208ENST00000548817 CHD1O14646 1710 aa16.33■□□□□ 0.2
TROAP-208ENST00000548817 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
TROAP-208ENST00000548817 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
TROAP-208ENST00000548817 TOPBP1Q92547 1522 aa16.29■□□□□ 0.2
TROAP-208ENST00000548817 TARBP1Q13395 1621 aaKnown RBP16.21■□□□□ 0.19
TROAP-208ENST00000548817 DNMBPQ6XZF7 1577 aa16.2■□□□□ 0.18
TROAP-208ENST00000548817 AQRO60306 1485 aaKnown RBP eCLIP16.18■□□□□ 0.184e-7■□□□□ 11.2
TROAP-208ENST00000548817 CLASP1Q7Z460 1538 aa16.17■□□□□ 0.18
TROAP-208ENST00000548817 FBLN2P98095 1184 aa16.16■□□□□ 0.18
TROAP-208ENST00000548817 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
TROAP-208ENST00000548817 WDR97A6NE52 1622 aa16.1■□□□□ 0.17
TROAP-208ENST00000548817 POLA1P09884 1462 aaPredicted RBP16.08■□□□□ 0.16
TROAP-208ENST00000548817 CCDC88BA6NC98 1476 aa16.06■□□□□ 0.16
TROAP-208ENST00000548817 MAGI1Q96QZ7 1491 aaPredicted RBP16.04■□□□□ 0.16
TROAP-208ENST00000548817 SNAPC4Q5SXM2 1469 aa16.03■□□□□ 0.16
TROAP-208ENST00000548817 GAPVD1Q14C86 1478 aa16.02■□□□□ 0.15
TROAP-208ENST00000548817 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
TROAP-208ENST00000548817 TDRD9Q8NDG6 1382 aaKnown RBP15.98■□□□□ 0.15
TROAP-208ENST00000548817 SYNJ2O15056 1496 aa15.97■□□□□ 0.15
TROAP-208ENST00000548817 SOGA1O94964 1423 aa15.97■□□□□ 0.15
TROAP-208ENST00000548817 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
TROAP-208ENST00000548817 GRIN2BQ13224 1484 aa15.95■□□□□ 0.14
TROAP-208ENST00000548817 FGD5Q6ZNL6 1462 aa15.87■□□□□ 0.13
TROAP-208ENST00000548817 ILDR1Q86SU0 546 aaPredicted RBP15.86■□□□□ 0.13
TROAP-208ENST00000548817 KIF13AQ9H1H9 1805 aa15.84■□□□□ 0.13
TROAP-208ENST00000548817 PBRM1Q86U86 1689 aa15.83■□□□□ 0.12
TROAP-208ENST00000548817 ERCC6L2Q5T890 1561 aa15.78■□□□□ 0.12
TROAP-208ENST00000548817 CEP170Q5SW79 1584 aa15.76■□□□□ 0.11
TROAP-208ENST00000548817 CUX1P39880 1505 aa15.75■□□□□ 0.11
TROAP-208ENST00000548817 GRIN2AQ12879 1464 aa15.73■□□□□ 0.11
TROAP-208ENST00000548817 SHROOM2Q13796 1616 aa15.73■□□□□ 0.11
TROAP-208ENST00000548817 ABCA5Q8WWZ7 1642 aa15.73■□□□□ 0.11
TROAP-208ENST00000548817 NUP160Q12769 1436 aa15.72■□□□□ 0.11
TROAP-208ENST00000548817 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
TROAP-208ENST00000548817 KDM4FA0A1W2PPD8 638 aa15.7■□□□□ 0.1
TROAP-208ENST00000548817 ABCC10Q5T3U5 1492 aa15.69■□□□□ 0.1
TROAP-208ENST00000548817 KDM6BO15054 1643 aa15.66■□□□□ 0.1
TROAP-208ENST00000548817 MAPKBP1O60336 1514 aa15.66■□□□□ 0.1
TROAP-208ENST00000548817 ADAMTS12P58397 1594 aa15.66■□□□□ 0.1
TROAP-208ENST00000548817 DIP2BQ9P265 1576 aa15.63■□□□□ 0.09
TROAP-208ENST00000548817 FAM69CQ0P6D2 419 aa15.63■□□□□ 0.09
TROAP-208ENST00000548817 FHAD1B1AJZ9 1412 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms