RNA–Protein interactions for RNA: ENST00000548709.1

ERBB3-206, Transcript of erb-b2 receptor tyrosine kinase 3, humanhuman

TSL 2

Gene ERBB3, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB3-206ENST00000548709 NISCHQ9Y2I1 1504 aa18.32■□□□□ 0.52
ERBB3-206ENST00000548709 ABCC9O60706 1549 aa16.76■□□□□ 0.27
ERBB3-206ENST00000548709 CCDC180Q9P1Z9 1646 aa16.41■□□□□ 0.22
ERBB3-206ENST00000548709 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
ERBB3-206ENST00000548709 RB1CC1Q8TDY2 1594 aa15.86■□□□□ 0.13
ERBB3-206ENST00000548709 DCAF8L2P0C7V8 631 aa15.74■□□□□ 0.11
ERBB3-206ENST00000548709 NACADO15069 1562 aa15.73■□□□□ 0.11
ERBB3-206ENST00000548709 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
ERBB3-206ENST00000548709 MYO15BQ96JP2 1530 aa15.49■□□□□ 0.07
ERBB3-206ENST00000548709 BICRAQ9NZM4 1560 aa15.3■□□□□ 0.04
ERBB3-206ENST00000548709 SHROOM4Q9ULL8 1493 aa15.27■□□□□ 0.03
ERBB3-206ENST00000548709 CECR2Q9BXF3 1484 aa15.19■□□□□ 0.02
ERBB3-206ENST00000548709 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
ERBB3-206ENST00000548709 DCAF1Q9Y4B6 1507 aa15.17■□□□□ 0.02
ERBB3-206ENST00000548709 ZCCHC6Q5VYS8 1495 aaKnown RBP15.09■□□□□ 0.01
ERBB3-206ENST00000548709 CC2D2AQ9P2K1 1620 aa15.06■□□□□ 0
ERBB3-206ENST00000548709 DNAJC5Q9H3Z4 198 aa15.01□□□□□ -0.01
ERBB3-206ENST00000548709 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
ERBB3-206ENST00000548709 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
ERBB3-206ENST00000548709 CUX2O14529 1486 aa14.63□□□□□ -0.07
ERBB3-206ENST00000548709 NCAPD3P42695 1498 aa14.59□□□□□ -0.07
ERBB3-206ENST00000548709 ERCC6Q03468 1493 aa14.57□□□□□ -0.08
ERBB3-206ENST00000548709 ATAD2BQ9ULI0 1458 aa14.45□□□□□ -0.1
ERBB3-206ENST00000548709 SMARCA2P51531 1590 aa14.39□□□□□ -0.11
ERBB3-206ENST00000548709 HMGXB3Q12766 1538 aa14.36□□□□□ -0.11
ERBB3-206ENST00000548709 BAZ1BQ9UIG0 1483 aaKnown RBP14.29□□□□□ -0.12
ERBB3-206ENST00000548709 NESP48681 1621 aa14.28□□□□□ -0.12
ERBB3-206ENST00000548709 PDS5BQ9NTI5 1447 aa14.27□□□□□ -0.12
ERBB3-206ENST00000548709 SMARCA4P51532 1647 aa14.25□□□□□ -0.13
ERBB3-206ENST00000548709 BAZ1AQ9NRL2 1556 aaPredicted RBP14.24□□□□□ -0.13
ERBB3-206ENST00000548709 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
ERBB3-206ENST00000548709 TRIM41Q8WV44 630 aa14.18□□□□□ -0.14
ERBB3-206ENST00000548709 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
ERBB3-206ENST00000548709 CADPSQ9ULU8 1353 aa14.17□□□□□ -0.14
ERBB3-206ENST00000548709 THOC2Q8NI27 1593 aaKnown RBP14.11□□□□□ -0.15
ERBB3-206ENST00000548709 OSCARQ8IYS5 282 aa14.07□□□□□ -0.16
ERBB3-206ENST00000548709 MROH2BQ7Z745 1585 aa14.06□□□□□ -0.16
ERBB3-206ENST00000548709 MRC2Q9UBG0 1479 aa14.06□□□□□ -0.16
ERBB3-206ENST00000548709 WDR62O43379 1518 aa13.96□□□□□ -0.17
ERBB3-206ENST00000548709 CEP164Q9UPV0 1460 aa13.95□□□□□ -0.18
ERBB3-206ENST00000548709 KIF21AQ7Z4S6 1674 aa13.93□□□□□ -0.18
ERBB3-206ENST00000548709 FANCD2Q9BXW9 1451 aa13.92□□□□□ -0.18
ERBB3-206ENST00000548709 CFTRP13569 1480 aa13.89□□□□□ -0.19
ERBB3-206ENST00000548709 WIZO95785 1651 aa13.78□□□□□ -0.2
ERBB3-206ENST00000548709 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.21
ERBB3-206ENST00000548709 URB2Q14146 1524 aaKnown RBP13.75□□□□□ -0.21
ERBB3-206ENST00000548709 IFT140Q96RY7 1462 aa13.72□□□□□ -0.21
ERBB3-206ENST00000548709 CYB5RLQ6IPT4 315 aa13.7□□□□□ -0.22
ERBB3-206ENST00000548709 TOP2AP11388 1531 aaKnown RBP13.69□□□□□ -0.22
ERBB3-206ENST00000548709 ABCC8Q09428 1581 aa13.67□□□□□ -0.22
ERBB3-206ENST00000548709 TRHP20396 242 aaPredicted RBP13.64□□□□□ -0.23
ERBB3-206ENST00000548709 ARHGEF11O15085 1522 aa13.63□□□□□ -0.23
ERBB3-206ENST00000548709 ZNF608Q9ULD9 1512 aaPredicted RBP13.62□□□□□ -0.23
ERBB3-206ENST00000548709 FBLN2P98095 1184 aa13.6□□□□□ -0.23
ERBB3-206ENST00000548709 RIMBP3CA6NJZ7 1639 aa13.6□□□□□ -0.23
ERBB3-206ENST00000548709 RIMBP3BA6NNM3 1639 aa13.6□□□□□ -0.23
ERBB3-206ENST00000548709 RIMBP3Q9UFD9 1639 aa13.6□□□□□ -0.23
ERBB3-206ENST00000548709 CCDC88BA6NC98 1476 aa13.6□□□□□ -0.23
ERBB3-206ENST00000548709 TOPBP1Q92547 1522 aa13.59□□□□□ -0.23
ERBB3-206ENST00000548709 AQRO60306 1485 aaKnown RBP eCLIP13.54□□□□□ -0.245e-11■■■■■ 32.1
ERBB3-206ENST00000548709 CHMP7Q8WUX9 453 aaPredicted RBP13.51□□□□□ -0.25
ERBB3-206ENST00000548709 DNMBPQ6XZF7 1577 aa13.49□□□□□ -0.25
ERBB3-206ENST00000548709 AEBP2Q6ZN18 517 aaPredicted RBP13.48□□□□□ -0.25
ERBB3-206ENST00000548709 SOGA1O94964 1423 aa13.47□□□□□ -0.25
ERBB3-206ENST00000548709 ARAP1Q96P48 1450 aa13.47□□□□□ -0.25
ERBB3-206ENST00000548709 TDRD9Q8NDG6 1382 aaKnown RBP13.45□□□□□ -0.26
ERBB3-206ENST00000548709 POLA1P09884 1462 aaPredicted RBP13.44□□□□□ -0.26
ERBB3-206ENST00000548709 EIF4G3O43432 1585 aaKnown RBP13.44□□□□□ -0.26
ERBB3-206ENST00000548709 PRDM2Q13029 1718 aa13.4□□□□□ -0.26
ERBB3-206ENST00000548709 TARBP1Q13395 1621 aaKnown RBP13.39□□□□□ -0.27
ERBB3-206ENST00000548709 RAD54L2Q9Y4B4 1467 aa13.38□□□□□ -0.27
ERBB3-206ENST00000548709 MAGI1Q96QZ7 1491 aaPredicted RBP13.36□□□□□ -0.27
ERBB3-206ENST00000548709 GRIN2BQ13224 1484 aa13.36□□□□□ -0.27
ERBB3-206ENST00000548709 SNAPC4Q5SXM2 1469 aa13.35□□□□□ -0.27
ERBB3-206ENST00000548709 WDR97A6NE52 1622 aa13.34□□□□□ -0.27
ERBB3-206ENST00000548709 SYNJ2O15056 1496 aa13.32□□□□□ -0.28
ERBB3-206ENST00000548709 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
ERBB3-206ENST00000548709 FGD5Q6ZNL6 1462 aa13.3□□□□□ -0.28
ERBB3-206ENST00000548709 CHD1O14646 1710 aa13.3□□□□□ -0.28
ERBB3-206ENST00000548709 CLASP1Q7Z460 1538 aa13.29□□□□□ -0.28
ERBB3-206ENST00000548709 GAPVD1Q14C86 1478 aa13.27□□□□□ -0.29
ERBB3-206ENST00000548709 CUX1P39880 1505 aa13.22□□□□□ -0.29
ERBB3-206ENST00000548709 ABCA10Q8WWZ4 1543 aa13.18□□□□□ -0.3
ERBB3-206ENST00000548709 WRNQ14191 1432 aaPredicted RBP eCLIP13.18□□□□□ -0.3
ERBB3-206ENST00000548709 NPM1P06748 294 aaKnown RBP eCLIP13.15□□□□□ -0.3
ERBB3-206ENST00000548709 GRIN2AQ12879 1464 aa13.13□□□□□ -0.31
ERBB3-206ENST00000548709 NUP160Q12769 1436 aa13.13□□□□□ -0.31
ERBB3-206ENST00000548709 JPH4Q96JJ6 628 aa13.12□□□□□ -0.31
ERBB3-206ENST00000548709 FHAD1B1AJZ9 1412 aa13.12□□□□□ -0.31
ERBB3-206ENST00000548709 FAM69CQ0P6D2 419 aa13.07□□□□□ -0.32
ERBB3-206ENST00000548709 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
ERBB3-206ENST00000548709 PRG4Q92954 1404 aaPredicted RBP13.05□□□□□ -0.32
ERBB3-206ENST00000548709 CEP170Q5SW79 1584 aa13.04□□□□□ -0.32
ERBB3-206ENST00000548709 SUPT5HO00267 1087 aaKnown RBP13.04□□□□□ -0.32
ERBB3-206ENST00000548709 ERICH3Q5RHP9 1530 aa13.01□□□□□ -0.33
ERBB3-206ENST00000548709 PBRM1Q86U86 1689 aa13.01□□□□□ -0.33
ERBB3-206ENST00000548709 ERCC6L2Q5T890 1561 aa13□□□□□ -0.33
ERBB3-206ENST00000548709 ADAMTS12P58397 1594 aa12.98□□□□□ -0.33
ERBB3-206ENST00000548709 ABCC10Q5T3U5 1492 aa12.97□□□□□ -0.33
ERBB3-206ENST00000548709 SHROOM2Q13796 1616 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 194.4 ms