RNA–Protein interactions for RNA: ENST00000548434.1

RAPGEF3-217, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 695 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-217ENST00000548434 NISCHQ9Y2I1 1504 aa40.36■■■■■ 4.05
RAPGEF3-217ENST00000548434 CCDC180Q9P1Z9 1646 aa36.11■■■■□ 3.37
RAPGEF3-217ENST00000548434 ABCC9O60706 1549 aa35.83■■■■□ 3.33
RAPGEF3-217ENST00000548434 RB1CC1Q8TDY2 1594 aa34.21■■■■□ 3.07
RAPGEF3-217ENST00000548434 NACADO15069 1562 aa34.08■■■■□ 3.05
RAPGEF3-217ENST00000548434 MYO15BQ96JP2 1530 aa33.77■■■■□ 3
RAPGEF3-217ENST00000548434 DCAF8L2P0C7V8 631 aa33.71■■■□□ 2.99
RAPGEF3-217ENST00000548434 DNAJC5BQ9UF47 199 aa33.64■■■□□ 2.98
RAPGEF3-217ENST00000548434 UNC13AQ9UPW8 1703 aa33.59■■■□□ 2.97
RAPGEF3-217ENST00000548434 ZCCHC6Q5VYS8 1495 aaKnown RBP33.49■■■□□ 2.95
RAPGEF3-217ENST00000548434 PABPN1Q86U42 306 aaKnown RBP eCLIP33.4■■■□□ 2.94
RAPGEF3-217ENST00000548434 DCAF1Q9Y4B6 1507 aa33.39■■■□□ 2.94
RAPGEF3-217ENST00000548434 BICRAQ9NZM4 1560 aa33.38■■■□□ 2.93
RAPGEF3-217ENST00000548434 SHROOM4Q9ULL8 1493 aa32.84■■■□□ 2.85
RAPGEF3-217ENST00000548434 SCRIBQ14160 1630 aa32.82■■■□□ 2.84
RAPGEF3-217ENST00000548434 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
RAPGEF3-217ENST00000548434 EIF4G1Q04637 1599 aaKnown RBP32.43■■■□□ 2.78
RAPGEF3-217ENST00000548434 CECR2Q9BXF3 1484 aa32.27■■■□□ 2.76
RAPGEF3-217ENST00000548434 NCAPD3P42695 1498 aa31.52■■■□□ 2.64
RAPGEF3-217ENST00000548434 ATAD2BQ9ULI0 1458 aa31.41■■■□□ 2.62
RAPGEF3-217ENST00000548434 SMARCA4P51532 1647 aa31.41■■■□□ 2.62
RAPGEF3-217ENST00000548434 SMARCA2P51531 1590 aa31.27■■■□□ 2.6
RAPGEF3-217ENST00000548434 HMGXB3Q12766 1538 aa31.25■■■□□ 2.59
RAPGEF3-217ENST00000548434 BAZ1AQ9NRL2 1556 aaPredicted RBP31.24■■■□□ 2.59
RAPGEF3-217ENST00000548434 PEG3Q9GZU2 1588 aa31.19■■■□□ 2.58
RAPGEF3-217ENST00000548434 MROH2BQ7Z745 1585 aa31.11■■■□□ 2.57
RAPGEF3-217ENST00000548434 BAZ1BQ9UIG0 1483 aaKnown RBP31.01■■■□□ 2.56
RAPGEF3-217ENST00000548434 NESP48681 1621 aa30.91■■■□□ 2.54
RAPGEF3-217ENST00000548434 CUX2O14529 1486 aa30.83■■■□□ 2.53
RAPGEF3-217ENST00000548434 ERCC6Q03468 1493 aa30.82■■■□□ 2.52
RAPGEF3-217ENST00000548434 WIZO95785 1651 aa30.72■■■□□ 2.51
RAPGEF3-217ENST00000548434 LAMC3Q9Y6N6 1575 aa30.7■■■□□ 2.5
RAPGEF3-217ENST00000548434 DNAJC5Q9H3Z4 198 aa30.66■■■□□ 2.5
RAPGEF3-217ENST00000548434 THOC2Q8NI27 1593 aaKnown RBP30.58■■■□□ 2.49
RAPGEF3-217ENST00000548434 RSF1Q96T23 1441 aaPredicted RBP30.54■■■□□ 2.48
RAPGEF3-217ENST00000548434 KIF21AQ7Z4S6 1674 aa30.52■■■□□ 2.48
RAPGEF3-217ENST00000548434 CADPSQ9ULU8 1353 aa30.51■■■□□ 2.47
RAPGEF3-217ENST00000548434 PDS5BQ9NTI5 1447 aa30.46■■■□□ 2.47
RAPGEF3-217ENST00000548434 TOP2AP11388 1531 aaKnown RBP30.32■■■□□ 2.44
RAPGEF3-217ENST00000548434 CFTRP13569 1480 aa30.25■■■□□ 2.43
RAPGEF3-217ENST00000548434 MRC2Q9UBG0 1479 aa30.21■■■□□ 2.43
RAPGEF3-217ENST00000548434 WDR62O43379 1518 aa30.19■■■□□ 2.42
RAPGEF3-217ENST00000548434 FANCD2Q9BXW9 1451 aa30.12■■■□□ 2.41
RAPGEF3-217ENST00000548434 CEP164Q9UPV0 1460 aa30.09■■■□□ 2.41
RAPGEF3-217ENST00000548434 CCDC88BA6NC98 1476 aa30■■■□□ 2.39
RAPGEF3-217ENST00000548434 URB2Q14146 1524 aaKnown RBP29.94■■■□□ 2.38
RAPGEF3-217ENST00000548434 PRDM2Q13029 1718 aa29.93■■■□□ 2.38
RAPGEF3-217ENST00000548434 TOPBP1Q92547 1522 aa29.61■■■□□ 2.33
RAPGEF3-217ENST00000548434 ZNF608Q9ULD9 1512 aaPredicted RBP29.52■■■□□ 2.32
RAPGEF3-217ENST00000548434 IFT140Q96RY7 1462 aa29.52■■■□□ 2.32
RAPGEF3-217ENST00000548434 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
RAPGEF3-217ENST00000548434 DNMBPQ6XZF7 1577 aa29.5■■■□□ 2.31
RAPGEF3-217ENST00000548434 OSCARQ8IYS5 282 aa29.42■■■□□ 2.3
RAPGEF3-217ENST00000548434 TARBP1Q13395 1621 aaKnown RBP29.4■■■□□ 2.3
RAPGEF3-217ENST00000548434 POLA1P09884 1462 aaPredicted RBP29.32■■■□□ 2.28
RAPGEF3-217ENST00000548434 EIF4G3O43432 1585 aaKnown RBP29.31■■■□□ 2.28
RAPGEF3-217ENST00000548434 AQRO60306 1485 aaKnown RBP eCLIP29.24■■■□□ 2.27
RAPGEF3-217ENST00000548434 RAD54L2Q9Y4B4 1467 aa29.21■■■□□ 2.27
RAPGEF3-217ENST00000548434 CUX1P39880 1505 aa29.2■■■□□ 2.27
RAPGEF3-217ENST00000548434 TRIM41Q8WV44 630 aa29.18■■■□□ 2.26
RAPGEF3-217ENST00000548434 SOGA1O94964 1423 aa29.15■■■□□ 2.26
RAPGEF3-217ENST00000548434 FGD5Q6ZNL6 1462 aa29.13■■■□□ 2.25
RAPGEF3-217ENST00000548434 SUPT5HO00267 1087 aaKnown RBP29.12■■■□□ 2.25
RAPGEF3-217ENST00000548434 RIMBP3CA6NJZ7 1639 aa29.08■■■□□ 2.25
RAPGEF3-217ENST00000548434 RIMBP3BA6NNM3 1639 aa29.08■■■□□ 2.25
RAPGEF3-217ENST00000548434 RIMBP3Q9UFD9 1639 aa29.08■■■□□ 2.25
RAPGEF3-217ENST00000548434 CHD1O14646 1710 aa29.08■■■□□ 2.25
RAPGEF3-217ENST00000548434 TDRD9Q8NDG6 1382 aaKnown RBP29.07■■■□□ 2.24
RAPGEF3-217ENST00000548434 WDR97A6NE52 1622 aa29.05■■■□□ 2.24
RAPGEF3-217ENST00000548434 ARHGEF11O15085 1522 aa28.99■■■□□ 2.23
RAPGEF3-217ENST00000548434 SNAPC4Q5SXM2 1469 aa28.91■■■□□ 2.22
RAPGEF3-217ENST00000548434 GRIN2BQ13224 1484 aa28.87■■■□□ 2.21
RAPGEF3-217ENST00000548434 MAGI1Q96QZ7 1491 aaPredicted RBP28.86■■■□□ 2.21
RAPGEF3-217ENST00000548434 ABCA10Q8WWZ4 1543 aa28.86■■■□□ 2.21
RAPGEF3-217ENST00000548434 FBLN2P98095 1184 aa28.83■■■□□ 2.21
RAPGEF3-217ENST00000548434 ABCA5Q8WWZ7 1642 aa28.81■■■□□ 2.2
RAPGEF3-217ENST00000548434 CLASP1Q7Z460 1538 aa28.8■■■□□ 2.2
RAPGEF3-217ENST00000548434 GAPVD1Q14C86 1478 aa28.8■■■□□ 2.2
RAPGEF3-217ENST00000548434 PBRM1Q86U86 1689 aa28.79■■■□□ 2.2
RAPGEF3-217ENST00000548434 BIVM-ERCC5R4GMW8 1640 aa28.79■■■□□ 2.2
RAPGEF3-217ENST00000548434 SYNJ2O15056 1496 aa28.77■■■□□ 2.2
RAPGEF3-217ENST00000548434 TOP2BQ02880 1626 aa28.76■■■□□ 2.2
RAPGEF3-217ENST00000548434 ARAP1Q96P48 1450 aa28.75■■■□□ 2.19
RAPGEF3-217ENST00000548434 SYNJ1O43426 1573 aa28.74■■■□□ 2.19
RAPGEF3-217ENST00000548434 CHMP7Q8WUX9 453 aaPredicted RBP28.71■■■□□ 2.19
RAPGEF3-217ENST00000548434 WRNQ14191 1432 aaPredicted RBP eCLIP28.7■■■□□ 2.19
RAPGEF3-217ENST00000548434 CYB5RLQ6IPT4 315 aa28.69■■■□□ 2.18
RAPGEF3-217ENST00000548434 ADAMTS12P58397 1594 aa28.54■■■□□ 2.16
RAPGEF3-217ENST00000548434 GRIN2AQ12879 1464 aa28.52■■■□□ 2.16
RAPGEF3-217ENST00000548434 NUP160Q12769 1436 aa28.48■■■□□ 2.15
RAPGEF3-217ENST00000548434 ERICH3Q5RHP9 1530 aa28.48■■■□□ 2.15
RAPGEF3-217ENST00000548434 CEP170Q5SW79 1584 aa28.45■■■□□ 2.14
RAPGEF3-217ENST00000548434 FHAD1B1AJZ9 1412 aa28.44■■■□□ 2.14
RAPGEF3-217ENST00000548434 ERCC6L2Q5T890 1561 aa28.38■■■□□ 2.13
RAPGEF3-217ENST00000548434 SHROOM2Q13796 1616 aa28.36■■■□□ 2.13
RAPGEF3-217ENST00000548434 IGF1RP08069 1367 aa28.22■■■□□ 2.11
RAPGEF3-217ENST00000548434 TRHP20396 242 aaPredicted RBP28.19■■■□□ 2.1
RAPGEF3-217ENST00000548434 RUSC2Q8N2Y8 1516 aa28.13■■■□□ 2.09
RAPGEF3-217ENST00000548434 JPH4Q96JJ6 628 aa28.13■■■□□ 2.09
RAPGEF3-217ENST00000548434 KIF27Q86VH2 1401 aa28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms