RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 NISCHQ9Y2I1 1504 aa36.39■■■■□ 3.42
PTCH1-217ENST00000548420 ABCC9O60706 1549 aa34.6■■■■□ 3.13
PTCH1-217ENST00000548420 DNAJC5BQ9UF47 199 aa33.85■■■■□ 3.01
PTCH1-217ENST00000548420 CCDC180Q9P1Z9 1646 aa33.14■■■□□ 2.9
PTCH1-217ENST00000548420 RB1CC1Q8TDY2 1594 aa32.2■■■□□ 2.75
PTCH1-217ENST00000548420 PABPN1Q86U42 306 aaKnown RBP eCLIP32.05■■■□□ 2.72
PTCH1-217ENST00000548420 DNAJC5Q9H3Z4 198 aa31.92■■■□□ 2.7
PTCH1-217ENST00000548420 NACADO15069 1562 aa31.67■■■□□ 2.66
PTCH1-217ENST00000548420 UNC13AQ9UPW8 1703 aa31.61■■■□□ 2.65
PTCH1-217ENST00000548420 BICRAQ9NZM4 1560 aa31.49■■■□□ 2.63
PTCH1-217ENST00000548420 DCAF8L2P0C7V8 631 aa31.29■■■□□ 2.6
PTCH1-217ENST00000548420 CECR2Q9BXF3 1484 aa31.27■■■□□ 2.6
PTCH1-217ENST00000548420 CC2D2AQ9P2K1 1620 aa31.16■■■□□ 2.58
PTCH1-217ENST00000548420 MYO15BQ96JP2 1530 aa30.78■■■□□ 2.52
PTCH1-217ENST00000548420 EIF4G1Q04637 1599 aaKnown RBP30.74■■■□□ 2.51
PTCH1-217ENST00000548420 SHROOM4Q9ULL8 1493 aa30.69■■■□□ 2.5
PTCH1-217ENST00000548420 CUX2O14529 1486 aa30.26■■■□□ 2.44
PTCH1-217ENST00000548420 SCRIBQ14160 1630 aa30.19■■■□□ 2.42
PTCH1-217ENST00000548420 TRIM41Q8WV44 630 aa29.92■■■□□ 2.38
PTCH1-217ENST00000548420 DCAF1Q9Y4B6 1507 aa29.91■■■□□ 2.38
PTCH1-217ENST00000548420 ZCCHC6Q5VYS8 1495 aaKnown RBP29.86■■■□□ 2.37
PTCH1-217ENST00000548420 ERCC6Q03468 1493 aa29.84■■■□□ 2.37
PTCH1-217ENST00000548420 NESP48681 1621 aa29.39■■■□□ 2.3
PTCH1-217ENST00000548420 NCAPD3P42695 1498 aa29.32■■■□□ 2.28
PTCH1-217ENST00000548420 THOC2Q8NI27 1593 aaKnown RBP29.29■■■□□ 2.28
PTCH1-217ENST00000548420 ATAD2BQ9ULI0 1458 aa29.06■■■□□ 2.24
PTCH1-217ENST00000548420 SMARCA2P51531 1590 aa28.98■■■□□ 2.23
PTCH1-217ENST00000548420 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
PTCH1-217ENST00000548420 KIF21AQ7Z4S6 1674 aa28.89■■■□□ 2.21
PTCH1-217ENST00000548420 LAMC3Q9Y6N6 1575 aa28.8■■■□□ 2.2
PTCH1-217ENST00000548420 BAZ1AQ9NRL2 1556 aaPredicted RBP28.74■■■□□ 2.19
PTCH1-217ENST00000548420 OSCARQ8IYS5 282 aa28.7■■■□□ 2.18
PTCH1-217ENST00000548420 PDS5BQ9NTI5 1447 aa28.67■■■□□ 2.18
PTCH1-217ENST00000548420 SMARCA4P51532 1647 aa28.65■■■□□ 2.18
PTCH1-217ENST00000548420 BAZ1BQ9UIG0 1483 aaKnown RBP28.63■■■□□ 2.17
PTCH1-217ENST00000548420 MRC2Q9UBG0 1479 aa28.55■■■□□ 2.16
PTCH1-217ENST00000548420 WDR62O43379 1518 aa28.54■■■□□ 2.16
PTCH1-217ENST00000548420 RIMBP3CA6NJZ7 1639 aa28.52■■■□□ 2.16
PTCH1-217ENST00000548420 RIMBP3BA6NNM3 1639 aa28.52■■■□□ 2.16
PTCH1-217ENST00000548420 RIMBP3Q9UFD9 1639 aa28.52■■■□□ 2.16
PTCH1-217ENST00000548420 PEG3Q9GZU2 1588 aa28.37■■■□□ 2.13
PTCH1-217ENST00000548420 CADPSQ9ULU8 1353 aa28.36■■■□□ 2.13
PTCH1-217ENST00000548420 AEBP2Q6ZN18 517 aaPredicted RBP28.34■■■□□ 2.13
PTCH1-217ENST00000548420 ARHGEF11O15085 1522 aa28.28■■■□□ 2.12
PTCH1-217ENST00000548420 TRHP20396 242 aaPredicted RBP28.23■■■□□ 2.11
PTCH1-217ENST00000548420 CYB5RLQ6IPT4 315 aa28.17■■■□□ 2.1
PTCH1-217ENST00000548420 CEP164Q9UPV0 1460 aa28.14■■■□□ 2.09
PTCH1-217ENST00000548420 MROH2BQ7Z745 1585 aa28.08■■■□□ 2.09
PTCH1-217ENST00000548420 FANCD2Q9BXW9 1451 aa28.03■■■□□ 2.08
PTCH1-217ENST00000548420 URB2Q14146 1524 aaKnown RBP27.96■■■□□ 2.07
PTCH1-217ENST00000548420 ARAP1Q96P48 1450 aa27.95■■■□□ 2.06
PTCH1-217ENST00000548420 ZNF608Q9ULD9 1512 aaPredicted RBP27.86■■■□□ 2.05
PTCH1-217ENST00000548420 CFTRP13569 1480 aa27.76■■■□□ 2.03
PTCH1-217ENST00000548420 WIZO95785 1651 aa27.66■■■□□ 2.02
PTCH1-217ENST00000548420 IFT140Q96RY7 1462 aa27.64■■■□□ 2.01
PTCH1-217ENST00000548420 CHD1O14646 1710 aa27.61■■■□□ 2.01
PTCH1-217ENST00000548420 RSF1Q96T23 1441 aaPredicted RBP27.59■■■□□ 2.01
PTCH1-217ENST00000548420 EIF4G3O43432 1585 aaKnown RBP27.54■■■□□ 2
PTCH1-217ENST00000548420 ILDR1Q86SU0 546 aaPredicted RBP27.52■■■□□ 2
PTCH1-217ENST00000548420 FBLN2P98095 1184 aa27.42■■□□□ 1.98
PTCH1-217ENST00000548420 AQRO60306 1485 aaKnown RBP eCLIP27.41■■□□□ 1.98
PTCH1-217ENST00000548420 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
PTCH1-217ENST00000548420 PRDM2Q13029 1718 aa27.28■■□□□ 1.96
PTCH1-217ENST00000548420 CLASP1Q7Z460 1538 aa27.28■■□□□ 1.96
PTCH1-217ENST00000548420 TARBP1Q13395 1621 aaKnown RBP27.25■■□□□ 1.95
PTCH1-217ENST00000548420 TOP2AP11388 1531 aaKnown RBP27.13■■□□□ 1.93
PTCH1-217ENST00000548420 DNMBPQ6XZF7 1577 aa27.09■■□□□ 1.93
PTCH1-217ENST00000548420 ABCC8Q09428 1581 aa27.09■■□□□ 1.93
PTCH1-217ENST00000548420 GAPVD1Q14C86 1478 aa27.07■■□□□ 1.92
PTCH1-217ENST00000548420 SYNJ1O43426 1573 aa27.03■■□□□ 1.92
PTCH1-217ENST00000548420 SNAPC4Q5SXM2 1469 aa27.03■■□□□ 1.92
PTCH1-217ENST00000548420 TDRD9Q8NDG6 1382 aaKnown RBP27.02■■□□□ 1.92
PTCH1-217ENST00000548420 POLA1P09884 1462 aaPredicted RBP27■■□□□ 1.91
PTCH1-217ENST00000548420 RAD54L2Q9Y4B4 1467 aa27■■□□□ 1.91
PTCH1-217ENST00000548420 KDM4FA0A1W2PPD8 638 aa26.98■■□□□ 1.91
PTCH1-217ENST00000548420 CHMP7Q8WUX9 453 aaPredicted RBP26.98■■□□□ 1.91
PTCH1-217ENST00000548420 CCDC88BA6NC98 1476 aa26.92■■□□□ 1.9
PTCH1-217ENST00000548420 KIF13AQ9H1H9 1805 aa26.88■■□□□ 1.89
PTCH1-217ENST00000548420 ERCC6L2Q5T890 1561 aa26.85■■□□□ 1.89
PTCH1-217ENST00000548420 SOGA1O94964 1423 aa26.84■■□□□ 1.89
PTCH1-217ENST00000548420 MAGI1Q96QZ7 1491 aaPredicted RBP26.84■■□□□ 1.89
PTCH1-217ENST00000548420 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
PTCH1-217ENST00000548420 GRIN2BQ13224 1484 aa26.72■■□□□ 1.87
PTCH1-217ENST00000548420 WDR97A6NE52 1622 aa26.72■■□□□ 1.87
PTCH1-217ENST00000548420 FGD5Q6ZNL6 1462 aa26.64■■□□□ 1.86
PTCH1-217ENST00000548420 CEP170Q5SW79 1584 aa26.57■■□□□ 1.84
PTCH1-217ENST00000548420 FAM69CQ0P6D2 419 aa26.55■■□□□ 1.84
PTCH1-217ENST00000548420 PBRM1Q86U86 1689 aa26.54■■□□□ 1.84
PTCH1-217ENST00000548420 ABCC10Q5T3U5 1492 aa26.51■■□□□ 1.83
PTCH1-217ENST00000548420 KDM6BO15054 1643 aa26.48■■□□□ 1.83
PTCH1-217ENST00000548420 CUX1P39880 1505 aa26.44■■□□□ 1.82
PTCH1-217ENST00000548420 SHROOM2Q13796 1616 aa26.43■■□□□ 1.82
PTCH1-217ENST00000548420 HECW2Q9P2P5 1572 aa26.41■■□□□ 1.82
PTCH1-217ENST00000548420 GRIN2AQ12879 1464 aa26.41■■□□□ 1.82
PTCH1-217ENST00000548420 DIP2BQ9P265 1576 aa26.4■■□□□ 1.82
PTCH1-217ENST00000548420 NUP160Q12769 1436 aa26.39■■□□□ 1.82
PTCH1-217ENST00000548420 ABCA5Q8WWZ7 1642 aa26.33■■□□□ 1.81
PTCH1-217ENST00000548420 ADGRL1O94910 1474 aa26.33■■□□□ 1.81
PTCH1-217ENST00000548420 TSPOAP1O95153 1857 aa26.31■■□□□ 1.8
PTCH1-217ENST00000548420 MAPKBP1O60336 1514 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms