RNA–Protein interactions for RNA: ENST00000548401.1

LETMD1-216, Transcript of LETM1 domain containing 1, humanhuman

TSL 3

Gene LETMD1, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-216ENST00000548401 NISCHQ9Y2I1 1504 aa41.51■■■■■ 4.24
LETMD1-216ENST00000548401 CCDC180Q9P1Z9 1646 aa36.8■■■■□ 3.48
LETMD1-216ENST00000548401 ABCC9O60706 1549 aa35.44■■■■□ 3.26
LETMD1-216ENST00000548401 ZCCHC6Q5VYS8 1495 aaKnown RBP34.74■■■■□ 3.15
LETMD1-216ENST00000548401 NACADO15069 1562 aa34.41■■■■□ 3.1
LETMD1-216ENST00000548401 DCAF1Q9Y4B6 1507 aa34.41■■■■□ 3.1
LETMD1-216ENST00000548401 MYO15BQ96JP2 1530 aa34.4■■■■□ 3.1
LETMD1-216ENST00000548401 RB1CC1Q8TDY2 1594 aa34.33■■■■□ 3.09
LETMD1-216ENST00000548401 DCAF8L2P0C7V8 631 aa34.19■■■■□ 3.06
LETMD1-216ENST00000548401 UNC13AQ9UPW8 1703 aa33.66■■■□□ 2.98
LETMD1-216ENST00000548401 SCRIBQ14160 1630 aa33.55■■■□□ 2.96
LETMD1-216ENST00000548401 BICRAQ9NZM4 1560 aa33.35■■■□□ 2.93
LETMD1-216ENST00000548401 PABPN1Q86U42 306 aaKnown RBP eCLIP33.09■■■□□ 2.89
LETMD1-216ENST00000548401 SHROOM4Q9ULL8 1493 aa33.03■■■□□ 2.88
LETMD1-216ENST00000548401 EIF4G1Q04637 1599 aaKnown RBP32.4■■■□□ 2.78
LETMD1-216ENST00000548401 CECR2Q9BXF3 1484 aa32.28■■■□□ 2.76
LETMD1-216ENST00000548401 SMARCA4P51532 1647 aa32.15■■■□□ 2.74
LETMD1-216ENST00000548401 BAZ1AQ9NRL2 1556 aaPredicted RBP32.15■■■□□ 2.74
LETMD1-216ENST00000548401 CC2D2AQ9P2K1 1620 aa32.14■■■□□ 2.74
LETMD1-216ENST00000548401 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
LETMD1-216ENST00000548401 MROH2BQ7Z745 1585 aa32.01■■■□□ 2.71
LETMD1-216ENST00000548401 PEG3Q9GZU2 1588 aa31.86■■■□□ 2.69
LETMD1-216ENST00000548401 ATAD2BQ9ULI0 1458 aa31.82■■■□□ 2.68
LETMD1-216ENST00000548401 SMARCA2P51531 1590 aa31.81■■■□□ 2.68
LETMD1-216ENST00000548401 RSF1Q96T23 1441 aaPredicted RBP31.77■■■□□ 2.68
LETMD1-216ENST00000548401 NCAPD3P42695 1498 aa31.72■■■□□ 2.67
LETMD1-216ENST00000548401 WIZO95785 1651 aa31.69■■■□□ 2.66
LETMD1-216ENST00000548401 HMGXB3Q12766 1538 aa31.68■■■□□ 2.66
LETMD1-216ENST00000548401 BAZ1BQ9UIG0 1483 aaKnown RBP31.56■■■□□ 2.64
LETMD1-216ENST00000548401 TOP2AP11388 1531 aaKnown RBP31.4■■■□□ 2.62
LETMD1-216ENST00000548401 SUPT5HO00267 1087 aaKnown RBP31.1■■■□□ 2.57
LETMD1-216ENST00000548401 CCDC88BA6NC98 1476 aa30.95■■■□□ 2.55
LETMD1-216ENST00000548401 LAMC3Q9Y6N6 1575 aa30.84■■■□□ 2.53
LETMD1-216ENST00000548401 NESP48681 1621 aa30.84■■■□□ 2.53
LETMD1-216ENST00000548401 CADPSQ9ULU8 1353 aa30.77■■■□□ 2.52
LETMD1-216ENST00000548401 CFTRP13569 1480 aa30.75■■■□□ 2.51
LETMD1-216ENST00000548401 PRDM2Q13029 1718 aa30.67■■■□□ 2.5
LETMD1-216ENST00000548401 KIF21AQ7Z4S6 1674 aa30.55■■■□□ 2.48
LETMD1-216ENST00000548401 PDS5BQ9NTI5 1447 aa30.52■■■□□ 2.48
LETMD1-216ENST00000548401 ERCC6Q03468 1493 aa30.47■■■□□ 2.47
LETMD1-216ENST00000548401 FANCD2Q9BXW9 1451 aa30.46■■■□□ 2.47
LETMD1-216ENST00000548401 CEP164Q9UPV0 1460 aa30.39■■■□□ 2.46
LETMD1-216ENST00000548401 THOC2Q8NI27 1593 aaKnown RBP30.38■■■□□ 2.45
LETMD1-216ENST00000548401 MRC2Q9UBG0 1479 aa30.27■■■□□ 2.44
LETMD1-216ENST00000548401 WDR62O43379 1518 aa30.21■■■□□ 2.43
LETMD1-216ENST00000548401 URB2Q14146 1524 aaKnown RBP30.17■■■□□ 2.42
LETMD1-216ENST00000548401 DNMBPQ6XZF7 1577 aa30.08■■■□□ 2.41
LETMD1-216ENST00000548401 CUX2O14529 1486 aa30.06■■■□□ 2.4
LETMD1-216ENST00000548401 TOPBP1Q92547 1522 aa30.06■■■□□ 2.4
LETMD1-216ENST00000548401 CUX1P39880 1505 aa30.02■■■□□ 2.4
LETMD1-216ENST00000548401 ABCC8Q09428 1581 aa30.01■■■□□ 2.39
LETMD1-216ENST00000548401 SYNJ1O43426 1573 aa29.91■■■□□ 2.38
LETMD1-216ENST00000548401 WRNQ14191 1432 aaPredicted RBP eCLIP29.91■■■□□ 2.38
LETMD1-216ENST00000548401 BIVM-ERCC5R4GMW8 1640 aa29.91■■■□□ 2.38
LETMD1-216ENST00000548401 TOP2BQ02880 1626 aa29.88■■■□□ 2.37
LETMD1-216ENST00000548401 POLA1P09884 1462 aaPredicted RBP29.83■■■□□ 2.37
LETMD1-216ENST00000548401 FGD5Q6ZNL6 1462 aa29.81■■■□□ 2.36
LETMD1-216ENST00000548401 TARBP1Q13395 1621 aaKnown RBP29.74■■■□□ 2.35
LETMD1-216ENST00000548401 IFT140Q96RY7 1462 aa29.72■■■□□ 2.35
LETMD1-216ENST00000548401 WDR97A6NE52 1622 aa29.67■■■□□ 2.34
LETMD1-216ENST00000548401 RAD54L2Q9Y4B4 1467 aa29.65■■■□□ 2.34
LETMD1-216ENST00000548401 SOGA1O94964 1423 aa29.62■■■□□ 2.33
LETMD1-216ENST00000548401 ZNF608Q9ULD9 1512 aaPredicted RBP29.57■■■□□ 2.32
LETMD1-216ENST00000548401 ABCA10Q8WWZ4 1543 aa29.55■■■□□ 2.32
LETMD1-216ENST00000548401 EIF4G3O43432 1585 aaKnown RBP29.55■■■□□ 2.32
LETMD1-216ENST00000548401 ABCA5Q8WWZ7 1642 aa29.47■■■□□ 2.31
LETMD1-216ENST00000548401 AQRO60306 1485 aaKnown RBP eCLIP29.4■■■□□ 2.39e-11■□□□□ 10.1
LETMD1-216ENST00000548401 TDRD9Q8NDG6 1382 aaKnown RBP29.39■■■□□ 2.29
LETMD1-216ENST00000548401 PBRM1Q86U86 1689 aa29.35■■■□□ 2.29
LETMD1-216ENST00000548401 CHIC1Q5VXU3 224 aa29.35■■■□□ 2.29
LETMD1-216ENST00000548401 TRIM41Q8WV44 630 aa29.35■■■□□ 2.29
LETMD1-216ENST00000548401 GAPVD1Q14C86 1478 aa29.33■■■□□ 2.29
LETMD1-216ENST00000548401 GRIN2BQ13224 1484 aa29.28■■■□□ 2.28
LETMD1-216ENST00000548401 KIF27Q86VH2 1401 aa29.23■■■□□ 2.27
LETMD1-216ENST00000548401 ERICH3Q5RHP9 1530 aa29.21■■■□□ 2.27
LETMD1-216ENST00000548401 SNAPC4Q5SXM2 1469 aa29.21■■■□□ 2.27
LETMD1-216ENST00000548401 MAGI1Q96QZ7 1491 aaPredicted RBP29.18■■■□□ 2.26
LETMD1-216ENST00000548401 ADAMTS12P58397 1594 aa29.15■■■□□ 2.26
LETMD1-216ENST00000548401 RUSC2Q8N2Y8 1516 aa29.15■■■□□ 2.26
LETMD1-216ENST00000548401 CHD1O14646 1710 aa29.08■■■□□ 2.25
LETMD1-216ENST00000548401 CUL7Q14999 1698 aa29.06■■■□□ 2.24
LETMD1-216ENST00000548401 SYNJ2O15056 1496 aa29.04■■■□□ 2.24
LETMD1-216ENST00000548401 IGF1RP08069 1367 aa29.04■■■□□ 2.24
LETMD1-216ENST00000548401 FHAD1B1AJZ9 1412 aa29.01■■■□□ 2.23
LETMD1-216ENST00000548401 EEA1Q15075 1411 aa28.99■■■□□ 2.23
LETMD1-216ENST00000548401 GRIN2AQ12879 1464 aa28.93■■■□□ 2.22
LETMD1-216ENST00000548401 CARMIL1Q5VZK9 1371 aa28.87■■■□□ 2.21
LETMD1-216ENST00000548401 PRXQ9BXM0 1461 aa28.85■■■□□ 2.21
LETMD1-216ENST00000548401 CHMP7Q8WUX9 453 aaPredicted RBP28.83■■■□□ 2.21
LETMD1-216ENST00000548401 CEP170Q5SW79 1584 aa28.82■■■□□ 2.2
LETMD1-216ENST00000548401 NUP160Q12769 1436 aa28.81■■■□□ 2.2
LETMD1-216ENST00000548401 FBLN2P98095 1184 aa28.81■■■□□ 2.2
LETMD1-216ENST00000548401 CLASP1Q7Z460 1538 aa28.79■■■□□ 2.2
LETMD1-216ENST00000548401 RAPGEF2Q9Y4G8 1499 aa28.78■■■□□ 2.2
LETMD1-216ENST00000548401 CSRNP3Q8WYN3 585 aa28.77■■■□□ 2.2
LETMD1-216ENST00000548401 KIF21BO75037 1637 aa28.74■■■□□ 2.19
LETMD1-216ENST00000548401 OSCARQ8IYS5 282 aa28.72■■■□□ 2.19
LETMD1-216ENST00000548401 FAM9AQ8IZU1 332 aaPredicted RBP28.72■■■□□ 2.19
LETMD1-216ENST00000548401 CTTNBP2Q8WZ74 1663 aa28.61■■■□□ 2.17
LETMD1-216ENST00000548401 SHROOM2Q13796 1616 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms