RNA–Protein interactions for RNA: ENST00000548279.5

CACNB3-208, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 4

Gene CACNB3, Length 576 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-208ENST00000548279 NISCHQ9Y2I1 1504 aa57.2■■■■■ 6.75
CACNB3-208ENST00000548279 CCDC180Q9P1Z9 1646 aa51.05■■■■■ 5.76
CACNB3-208ENST00000548279 ABCC9O60706 1549 aa50.45■■■■■ 5.67
CACNB3-208ENST00000548279 RB1CC1Q8TDY2 1594 aa48.25■■■■■ 5.31
CACNB3-208ENST00000548279 NACADO15069 1562 aa48.07■■■■■ 5.29
CACNB3-208ENST00000548279 DCAF8L2P0C7V8 631 aa47.91■■■■■ 5.26
CACNB3-208ENST00000548279 MYO15BQ96JP2 1530 aa47.61■■■■■ 5.21
CACNB3-208ENST00000548279 ZCCHC6Q5VYS8 1495 aaKnown RBP47.57■■■■■ 5.21
CACNB3-208ENST00000548279 UNC13AQ9UPW8 1703 aa47.28■■■■■ 5.16
CACNB3-208ENST00000548279 DCAF1Q9Y4B6 1507 aa47.25■■■■■ 5.15
CACNB3-208ENST00000548279 PABPN1Q86U42 306 aaKnown RBP eCLIP47.05■■■■■ 5.12
CACNB3-208ENST00000548279 BICRAQ9NZM4 1560 aa46.93■■■■■ 5.1
CACNB3-208ENST00000548279 DNAJC5BQ9UF47 199 aa46.79■■■■■ 5.08
CACNB3-208ENST00000548279 SCRIBQ14160 1630 aa46.6■■■■■ 5.05
CACNB3-208ENST00000548279 SHROOM4Q9ULL8 1493 aa46.22■■■■■ 4.99
CACNB3-208ENST00000548279 EIF4G1Q04637 1599 aaKnown RBP45.67■■■■■ 4.9
CACNB3-208ENST00000548279 CC2D2AQ9P2K1 1620 aa45.61■■■■■ 4.89
CACNB3-208ENST00000548279 CECR2Q9BXF3 1484 aa45.34■■■■■ 4.85
CACNB3-208ENST00000548279 SMARCA4P51532 1647 aa44.5■■■■■ 4.71
CACNB3-208ENST00000548279 NCAPD3P42695 1498 aa44.38■■■■■ 4.69
CACNB3-208ENST00000548279 ATAD2BQ9ULI0 1458 aa44.36■■■■■ 4.69
CACNB3-208ENST00000548279 BAZ1AQ9NRL2 1556 aaPredicted RBP44.32■■■■■ 4.69
CACNB3-208ENST00000548279 SMARCA2P51531 1590 aa44.23■■■■■ 4.67
CACNB3-208ENST00000548279 HMGXB3Q12766 1538 aa44.13■■■■■ 4.65
CACNB3-208ENST00000548279 MROH2BQ7Z745 1585 aa44.13■■■■■ 4.65
CACNB3-208ENST00000548279 PEG3Q9GZU2 1588 aa44.05■■■■■ 4.64
CACNB3-208ENST00000548279 BAZ1BQ9UIG0 1483 aaKnown RBP43.94■■■■■ 4.62
CACNB3-208ENST00000548279 WIZO95785 1651 aa43.63■■■■■ 4.58
CACNB3-208ENST00000548279 NESP48681 1621 aa43.56■■■■■ 4.56
CACNB3-208ENST00000548279 ERCC6Q03468 1493 aa43.44■■■■■ 4.54
CACNB3-208ENST00000548279 RSF1Q96T23 1441 aaPredicted RBP43.41■■■■■ 4.54
CACNB3-208ENST00000548279 LAMC3Q9Y6N6 1575 aa43.28■■■■■ 4.52
CACNB3-208ENST00000548279 CUX2O14529 1486 aa43.15■■■■■ 4.5
CACNB3-208ENST00000548279 TOP2AP11388 1531 aaKnown RBP43.09■■■■■ 4.49
CACNB3-208ENST00000548279 CADPSQ9ULU8 1353 aa43.04■■■■■ 4.48
CACNB3-208ENST00000548279 KIF21AQ7Z4S6 1674 aa43.03■■■■■ 4.48
CACNB3-208ENST00000548279 THOC2Q8NI27 1593 aaKnown RBP42.99■■■■■ 4.47
CACNB3-208ENST00000548279 PDS5BQ9NTI5 1447 aa42.95■■■■■ 4.47
CACNB3-208ENST00000548279 CFTRP13569 1480 aa42.72■■■■■ 4.43
CACNB3-208ENST00000548279 MRC2Q9UBG0 1479 aa42.61■■■■■ 4.41
CACNB3-208ENST00000548279 CCDC88BA6NC98 1476 aa42.59■■■■■ 4.41
CACNB3-208ENST00000548279 FANCD2Q9BXW9 1451 aa42.58■■■■■ 4.41
CACNB3-208ENST00000548279 CEP164Q9UPV0 1460 aa42.56■■■■■ 4.4
CACNB3-208ENST00000548279 WDR62O43379 1518 aa42.51■■■■■ 4.39
CACNB3-208ENST00000548279 DNAJC5Q9H3Z4 198 aa42.39■■■■■ 4.38
CACNB3-208ENST00000548279 PRDM2Q13029 1718 aa42.38■■■■■ 4.38
CACNB3-208ENST00000548279 URB2Q14146 1524 aaKnown RBP42.25■■■■■ 4.35
CACNB3-208ENST00000548279 SUPT5HO00267 1087 aaKnown RBP41.92■■■■■ 4.3
CACNB3-208ENST00000548279 TOPBP1Q92547 1522 aa41.87■■■■■ 4.29
CACNB3-208ENST00000548279 DNMBPQ6XZF7 1577 aa41.76■■■■■ 4.28
CACNB3-208ENST00000548279 ABCC8Q09428 1581 aa41.72■■■■■ 4.27
CACNB3-208ENST00000548279 IFT140Q96RY7 1462 aa41.67■■■■■ 4.26
CACNB3-208ENST00000548279 ZNF608Q9ULD9 1512 aaPredicted RBP41.62■■■■■ 4.25
CACNB3-208ENST00000548279 POLA1P09884 1462 aaPredicted RBP41.49■■■■■ 4.23
CACNB3-208ENST00000548279 TARBP1Q13395 1621 aaKnown RBP41.48■■■■■ 4.23
CACNB3-208ENST00000548279 EIF4G3O43432 1585 aaKnown RBP41.42■■■■■ 4.22
CACNB3-208ENST00000548279 CUX1P39880 1505 aa41.42■■■■■ 4.22
CACNB3-208ENST00000548279 RAD54L2Q9Y4B4 1467 aa41.34■■■■■ 4.21
CACNB3-208ENST00000548279 FGD5Q6ZNL6 1462 aa41.32■■■■■ 4.2
CACNB3-208ENST00000548279 AQRO60306 1485 aaKnown RBP eCLIP41.29■■■■■ 4.2
CACNB3-208ENST00000548279 SOGA1O94964 1423 aa41.26■■■■■ 4.19
CACNB3-208ENST00000548279 OSCARQ8IYS5 282 aa41.24■■■■■ 4.19
CACNB3-208ENST00000548279 TDRD9Q8NDG6 1382 aaKnown RBP41.12■■■■■ 4.17
CACNB3-208ENST00000548279 WDR97A6NE52 1622 aa41.05■■■■■ 4.16
CACNB3-208ENST00000548279 CHD1O14646 1710 aa41.01■■■■■ 4.16
CACNB3-208ENST00000548279 BIVM-ERCC5R4GMW8 1640 aa40.92■■■■■ 4.14
CACNB3-208ENST00000548279 SYNJ1O43426 1573 aa40.91■■■■■ 4.14
CACNB3-208ENST00000548279 SNAPC4Q5SXM2 1469 aa40.9■■■■■ 4.14
CACNB3-208ENST00000548279 WRNQ14191 1432 aaPredicted RBP eCLIP40.9■■■■■ 4.14
CACNB3-208ENST00000548279 TOP2BQ02880 1626 aa40.89■■■■■ 4.14
CACNB3-208ENST00000548279 ABCA10Q8WWZ4 1543 aa40.87■■■■■ 4.13
CACNB3-208ENST00000548279 GRIN2BQ13224 1484 aa40.83■■■■■ 4.13
CACNB3-208ENST00000548279 TRIM41Q8WV44 630 aa40.82■■■■■ 4.13
CACNB3-208ENST00000548279 FBLN2P98095 1184 aa40.81■■■■■ 4.12
CACNB3-208ENST00000548279 ABCA5Q8WWZ7 1642 aa40.8■■■■■ 4.12
CACNB3-208ENST00000548279 PBRM1Q86U86 1689 aa40.79■■■■■ 4.12
CACNB3-208ENST00000548279 GAPVD1Q14C86 1478 aa40.78■■■■■ 4.12
CACNB3-208ENST00000548279 MAGI1Q96QZ7 1491 aaPredicted RBP40.77■■■■■ 4.12
CACNB3-208ENST00000548279 RIMBP3CA6NJZ7 1639 aa40.76■■■■■ 4.12
CACNB3-208ENST00000548279 RIMBP3BA6NNM3 1639 aa40.76■■■■■ 4.12
CACNB3-208ENST00000548279 RIMBP3Q9UFD9 1639 aa40.76■■■■■ 4.12
CACNB3-208ENST00000548279 ARHGEF11O15085 1522 aa40.67■■■■■ 4.1
CACNB3-208ENST00000548279 SYNJ2O15056 1496 aa40.63■■■■■ 4.09
CACNB3-208ENST00000548279 CHMP7Q8WUX9 453 aaPredicted RBP40.6■■■■■ 4.09
CACNB3-208ENST00000548279 CLASP1Q7Z460 1538 aa40.53■■■■■ 4.08
CACNB3-208ENST00000548279 ADAMTS12P58397 1594 aa40.44■■■■■ 4.06
CACNB3-208ENST00000548279 ERICH3Q5RHP9 1530 aa40.35■■■■■ 4.05
CACNB3-208ENST00000548279 GRIN2AQ12879 1464 aa40.34■■■■■ 4.05
CACNB3-208ENST00000548279 ARAP1Q96P48 1450 aa40.34■■■■■ 4.05
CACNB3-208ENST00000548279 FHAD1B1AJZ9 1412 aa40.28■■■■■ 4.04
CACNB3-208ENST00000548279 CYB5RLQ6IPT4 315 aa40.27■■■■■ 4.04
CACNB3-208ENST00000548279 CEP170Q5SW79 1584 aa40.22■■■■■ 4.03
CACNB3-208ENST00000548279 NUP160Q12769 1436 aa40.18■■■■■ 4.02
CACNB3-208ENST00000548279 KIF27Q86VH2 1401 aa40.05■■■■■ 4
CACNB3-208ENST00000548279 ERCC6L2Q5T890 1561 aa40.01■■■■□ 3.99
CACNB3-208ENST00000548279 IGF1RP08069 1367 aa39.98■■■■□ 3.99
CACNB3-208ENST00000548279 SHROOM2Q13796 1616 aa39.96■■■■□ 3.99
CACNB3-208ENST00000548279 CUL7Q14999 1698 aa39.89■■■■□ 3.98
CACNB3-208ENST00000548279 RUSC2Q8N2Y8 1516 aa39.86■■■■□ 3.97
CACNB3-208ENST00000548279 CARMIL1Q5VZK9 1371 aa39.72■■■■□ 3.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms