RNA–Protein interactions for RNA: ENST00000548209.5

LETMD1-213, Transcript of LETM1 domain containing 1, humanhuman

TSL 4

Gene LETMD1, Length 568 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-213ENST00000548209 NISCHQ9Y2I1 1504 aa25.78■■□□□ 1.72
LETMD1-213ENST00000548209 ABCC9O60706 1549 aa24.23■■□□□ 1.47
LETMD1-213ENST00000548209 CCDC180Q9P1Z9 1646 aa23.6■■□□□ 1.37
LETMD1-213ENST00000548209 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
LETMD1-213ENST00000548209 RB1CC1Q8TDY2 1594 aa22.78■■□□□ 1.24
LETMD1-213ENST00000548209 UNC13AQ9UPW8 1703 aa22.43■■□□□ 1.18
LETMD1-213ENST00000548209 NACADO15069 1562 aa22.4■■□□□ 1.18
LETMD1-213ENST00000548209 PABPN1Q86U42 306 aaKnown RBP eCLIP22.37■■□□□ 1.17
LETMD1-213ENST00000548209 BICRAQ9NZM4 1560 aa22.12■■□□□ 1.13
LETMD1-213ENST00000548209 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
LETMD1-213ENST00000548209 DNAJC5Q9H3Z4 198 aa22.01■■□□□ 1.11
LETMD1-213ENST00000548209 CC2D2AQ9P2K1 1620 aa21.91■■□□□ 1.1
LETMD1-213ENST00000548209 CECR2Q9BXF3 1484 aa21.9■■□□□ 1.1
LETMD1-213ENST00000548209 MYO15BQ96JP2 1530 aa21.79■■□□□ 1.08
LETMD1-213ENST00000548209 SHROOM4Q9ULL8 1493 aa21.71■■□□□ 1.07
LETMD1-213ENST00000548209 EIF4G1Q04637 1599 aaKnown RBP21.65■■□□□ 1.06
LETMD1-213ENST00000548209 SCRIBQ14160 1630 aa21.41■■□□□ 1.02
LETMD1-213ENST00000548209 DCAF1Q9Y4B6 1507 aa21.24■□□□□ 0.99
LETMD1-213ENST00000548209 CUX2O14529 1486 aa21.2■□□□□ 0.98
LETMD1-213ENST00000548209 ZCCHC6Q5VYS8 1495 aaKnown RBP21.2■□□□□ 0.98
LETMD1-213ENST00000548209 ERCC6Q03468 1493 aa21■□□□□ 0.95
LETMD1-213ENST00000548209 TRIM41Q8WV44 630 aa20.77■□□□□ 0.92
LETMD1-213ENST00000548209 NCAPD3P42695 1498 aa20.62■□□□□ 0.89
LETMD1-213ENST00000548209 THOC2Q8NI27 1593 aaKnown RBP20.61■□□□□ 0.89
LETMD1-213ENST00000548209 NESP48681 1621 aa20.6■□□□□ 0.89
LETMD1-213ENST00000548209 HMGXB3Q12766 1538 aa20.47■□□□□ 0.87
LETMD1-213ENST00000548209 ATAD2BQ9ULI0 1458 aa20.46■□□□□ 0.87
LETMD1-213ENST00000548209 KIF21AQ7Z4S6 1674 aa20.45■□□□□ 0.86
LETMD1-213ENST00000548209 SMARCA2P51531 1590 aa20.44■□□□□ 0.86
LETMD1-213ENST00000548209 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
LETMD1-213ENST00000548209 SMARCA4P51532 1647 aa20.34■□□□□ 0.85
LETMD1-213ENST00000548209 BAZ1BQ9UIG0 1483 aaKnown RBP20.27■□□□□ 0.84
LETMD1-213ENST00000548209 BAZ1AQ9NRL2 1556 aaPredicted RBP20.25■□□□□ 0.83
LETMD1-213ENST00000548209 PDS5BQ9NTI5 1447 aa20.21■□□□□ 0.83
LETMD1-213ENST00000548209 MRC2Q9UBG0 1479 aa20.11■□□□□ 0.81
LETMD1-213ENST00000548209 PEG3Q9GZU2 1588 aa20.1■□□□□ 0.81
LETMD1-213ENST00000548209 WDR62O43379 1518 aa20.1■□□□□ 0.81
LETMD1-213ENST00000548209 OSCARQ8IYS5 282 aa20.05■□□□□ 0.8
LETMD1-213ENST00000548209 RIMBP3CA6NJZ7 1639 aa20.02■□□□□ 0.79
LETMD1-213ENST00000548209 RIMBP3BA6NNM3 1639 aa20.02■□□□□ 0.79
LETMD1-213ENST00000548209 RIMBP3Q9UFD9 1639 aa20.02■□□□□ 0.79
LETMD1-213ENST00000548209 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.79
LETMD1-213ENST00000548209 CEP164Q9UPV0 1460 aa19.89■□□□□ 0.77
LETMD1-213ENST00000548209 MROH2BQ7Z745 1585 aa19.86■□□□□ 0.77
LETMD1-213ENST00000548209 ARHGEF11O15085 1522 aa19.8■□□□□ 0.76
LETMD1-213ENST00000548209 FANCD2Q9BXW9 1451 aa19.77■□□□□ 0.76
LETMD1-213ENST00000548209 AEBP2Q6ZN18 517 aaPredicted RBP19.73■□□□□ 0.75
LETMD1-213ENST00000548209 TRHP20396 242 aaPredicted RBP19.72■□□□□ 0.75
LETMD1-213ENST00000548209 URB2Q14146 1524 aaKnown RBP19.66■□□□□ 0.74
LETMD1-213ENST00000548209 WIZO95785 1651 aa19.66■□□□□ 0.74
LETMD1-213ENST00000548209 CYB5RLQ6IPT4 315 aa19.64■□□□□ 0.73
LETMD1-213ENST00000548209 PRDM2Q13029 1718 aa19.59■□□□□ 0.73
LETMD1-213ENST00000548209 CFTRP13569 1480 aa19.58■□□□□ 0.72
LETMD1-213ENST00000548209 CHD1O14646 1710 aa19.57■□□□□ 0.72
LETMD1-213ENST00000548209 ARAP1Q96P48 1450 aa19.54■□□□□ 0.72
LETMD1-213ENST00000548209 ZNF608Q9ULD9 1512 aaPredicted RBP19.54■□□□□ 0.72
LETMD1-213ENST00000548209 IFT140Q96RY7 1462 aa19.49■□□□□ 0.71
LETMD1-213ENST00000548209 EIF4G3O43432 1585 aaKnown RBP19.48■□□□□ 0.71
LETMD1-213ENST00000548209 RSF1Q96T23 1441 aaPredicted RBP19.39■□□□□ 0.69
LETMD1-213ENST00000548209 TOPBP1Q92547 1522 aa19.32■□□□□ 0.68
LETMD1-213ENST00000548209 TOP2AP11388 1531 aaKnown RBP19.3■□□□□ 0.68
LETMD1-213ENST00000548209 FBLN2P98095 1184 aa19.29■□□□□ 0.68
LETMD1-213ENST00000548209 TARBP1Q13395 1621 aaKnown RBP19.25■□□□□ 0.67
LETMD1-213ENST00000548209 AQRO60306 1485 aaKnown RBP eCLIP19.25■□□□□ 0.679e-11■□□□□ 10.1
LETMD1-213ENST00000548209 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
LETMD1-213ENST00000548209 DNMBPQ6XZF7 1577 aa19.22■□□□□ 0.67
LETMD1-213ENST00000548209 CLASP1Q7Z460 1538 aa19.2■□□□□ 0.66
LETMD1-213ENST00000548209 SYNJ1O43426 1573 aa19.15■□□□□ 0.66
LETMD1-213ENST00000548209 SNAPC4Q5SXM2 1469 aa19.07■□□□□ 0.64
LETMD1-213ENST00000548209 POLA1P09884 1462 aaPredicted RBP19.06■□□□□ 0.64
LETMD1-213ENST00000548209 CCDC88BA6NC98 1476 aa19.04■□□□□ 0.64
LETMD1-213ENST00000548209 GAPVD1Q14C86 1478 aa19.02■□□□□ 0.63
LETMD1-213ENST00000548209 WDR97A6NE52 1622 aa19.01■□□□□ 0.63
LETMD1-213ENST00000548209 CHMP7Q8WUX9 453 aaPredicted RBP19■□□□□ 0.63
LETMD1-213ENST00000548209 RAD54L2Q9Y4B4 1467 aa19■□□□□ 0.63
LETMD1-213ENST00000548209 TDRD9Q8NDG6 1382 aaKnown RBP18.99■□□□□ 0.63
LETMD1-213ENST00000548209 KIF13AQ9H1H9 1805 aa18.99■□□□□ 0.63
LETMD1-213ENST00000548209 MAGI1Q96QZ7 1491 aaPredicted RBP18.98■□□□□ 0.63
LETMD1-213ENST00000548209 ILDR1Q86SU0 546 aaPredicted RBP18.95■□□□□ 0.62
LETMD1-213ENST00000548209 SOGA1O94964 1423 aa18.94■□□□□ 0.62
LETMD1-213ENST00000548209 PBRM1Q86U86 1689 aa18.93■□□□□ 0.62
LETMD1-213ENST00000548209 SYNJ2O15056 1496 aa18.92■□□□□ 0.62
LETMD1-213ENST00000548209 GRIN2BQ13224 1484 aa18.89■□□□□ 0.61
LETMD1-213ENST00000548209 FGD5Q6ZNL6 1462 aa18.85■□□□□ 0.61
LETMD1-213ENST00000548209 ERCC6L2Q5T890 1561 aa18.84■□□□□ 0.61
LETMD1-213ENST00000548209 CEP170Q5SW79 1584 aa18.74■□□□□ 0.59
LETMD1-213ENST00000548209 CUX1P39880 1505 aa18.71■□□□□ 0.59
LETMD1-213ENST00000548209 KDM4FA0A1W2PPD8 638 aa18.7■□□□□ 0.58
LETMD1-213ENST00000548209 SHROOM2Q13796 1616 aa18.69■□□□□ 0.58
LETMD1-213ENST00000548209 ABCA5Q8WWZ7 1642 aa18.68■□□□□ 0.58
LETMD1-213ENST00000548209 KDM6BO15054 1643 aa18.67■□□□□ 0.58
LETMD1-213ENST00000548209 TSPOAP1O95153 1857 aa18.67■□□□□ 0.58
LETMD1-213ENST00000548209 GRIN2AQ12879 1464 aa18.65■□□□□ 0.58
LETMD1-213ENST00000548209 ADAMTS12P58397 1594 aa18.6■□□□□ 0.57
LETMD1-213ENST00000548209 DIP2BQ9P265 1576 aa18.6■□□□□ 0.57
LETMD1-213ENST00000548209 ABCC10Q5T3U5 1492 aa18.59■□□□□ 0.57
LETMD1-213ENST00000548209 NUP160Q12769 1436 aa18.59■□□□□ 0.57
LETMD1-213ENST00000548209 FAM69CQ0P6D2 419 aa18.59■□□□□ 0.57
LETMD1-213ENST00000548209 ABCA10Q8WWZ4 1543 aa18.58■□□□□ 0.56
LETMD1-213ENST00000548209 MAPKBP1O60336 1514 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms