RNA–Protein interactions for RNA: ENST00000548116.5

SMPDL3B-205, Transcript of sphingomyelin phosphodiesterase acid like 3B, humanhuman

TSL 2

Gene SMPDL3B, Length 1,913 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3B-205ENST00000548116 NISCHQ9Y2I1 1504 aa31.03■■■□□ 2.56
SMPDL3B-205ENST00000548116 CCDC180Q9P1Z9 1646 aa27.04■■□□□ 1.92
SMPDL3B-205ENST00000548116 ZCCHC6Q5VYS8 1495 aaKnown RBP26.07■■□□□ 1.76
SMPDL3B-205ENST00000548116 DCAF1Q9Y4B6 1507 aa25.65■■□□□ 1.7
SMPDL3B-205ENST00000548116 ABCC9O60706 1549 aa25.59■■□□□ 1.69
SMPDL3B-205ENST00000548116 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
SMPDL3B-205ENST00000548116 MYO15BQ96JP2 1530 aa25.35■■□□□ 1.65
SMPDL3B-205ENST00000548116 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
SMPDL3B-205ENST00000548116 NACADO15069 1562 aa25.18■■□□□ 1.62
SMPDL3B-205ENST00000548116 RB1CC1Q8TDY2 1594 aa24.96■■□□□ 1.59
SMPDL3B-205ENST00000548116 SCRIBQ14160 1630 aa24.88■■□□□ 1.57
SMPDL3B-205ENST00000548116 UNC13AQ9UPW8 1703 aa24.51■■□□□ 1.51
SMPDL3B-205ENST00000548116 SUPT5HO00267 1087 aaKnown RBP24.3■■□□□ 1.48
SMPDL3B-205ENST00000548116 BICRAQ9NZM4 1560 aa24.27■■□□□ 1.48
SMPDL3B-205ENST00000548116 PABPN1Q86U42 306 aaKnown RBP eCLIP24.14■■□□□ 1.46
SMPDL3B-205ENST00000548116 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.45
SMPDL3B-205ENST00000548116 RSF1Q96T23 1441 aaPredicted RBP24.07■■□□□ 1.44
SMPDL3B-205ENST00000548116 MROH2BQ7Z745 1585 aa23.98■■□□□ 1.43
SMPDL3B-205ENST00000548116 BAZ1AQ9NRL2 1556 aaPredicted RBP23.94■■□□□ 1.42
SMPDL3B-205ENST00000548116 SMARCA4P51532 1647 aa23.85■■□□□ 1.41
SMPDL3B-205ENST00000548116 WIZO95785 1651 aa23.78■■□□□ 1.4
SMPDL3B-205ENST00000548116 PEG3Q9GZU2 1588 aa23.57■■□□□ 1.36
SMPDL3B-205ENST00000548116 TOP2AP11388 1531 aaKnown RBP23.52■■□□□ 1.36
SMPDL3B-205ENST00000548116 EIF4G1Q04637 1599 aaKnown RBP23.51■■□□□ 1.35
SMPDL3B-205ENST00000548116 ATAD2BQ9ULI0 1458 aa23.47■■□□□ 1.35
SMPDL3B-205ENST00000548116 SMARCA2P51531 1590 aa23.42■■□□□ 1.34
SMPDL3B-205ENST00000548116 BAZ1BQ9UIG0 1483 aaKnown RBP23.31■■□□□ 1.32
SMPDL3B-205ENST00000548116 CCDC88BA6NC98 1476 aa23.3■■□□□ 1.32
SMPDL3B-205ENST00000548116 CHIC1Q5VXU3 224 aa23.29■■□□□ 1.32
SMPDL3B-205ENST00000548116 NCAPD3P42695 1498 aa23.26■■□□□ 1.31
SMPDL3B-205ENST00000548116 HMGXB3Q12766 1538 aa23.22■■□□□ 1.31
SMPDL3B-205ENST00000548116 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
SMPDL3B-205ENST00000548116 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
SMPDL3B-205ENST00000548116 ABCC8Q09428 1581 aa22.8■■□□□ 1.24
SMPDL3B-205ENST00000548116 CFTRP13569 1480 aa22.75■■□□□ 1.23
SMPDL3B-205ENST00000548116 DNAJC5BQ9UF47 199 aa22.66■■□□□ 1.22
SMPDL3B-205ENST00000548116 CADPSQ9ULU8 1353 aa22.66■■□□□ 1.22
SMPDL3B-205ENST00000548116 WRNQ14191 1432 aaPredicted RBP eCLIP22.63■■□□□ 1.21
SMPDL3B-205ENST00000548116 PRDM2Q13029 1718 aa22.61■■□□□ 1.21
SMPDL3B-205ENST00000548116 SYNJ1O43426 1573 aa22.57■■□□□ 1.2
SMPDL3B-205ENST00000548116 NESP48681 1621 aa22.49■■□□□ 1.19
SMPDL3B-205ENST00000548116 TOP2BQ02880 1626 aa22.46■■□□□ 1.19
SMPDL3B-205ENST00000548116 LAMC3Q9Y6N6 1575 aa22.45■■□□□ 1.18
SMPDL3B-205ENST00000548116 BIVM-ERCC5R4GMW8 1640 aa22.44■■□□□ 1.18
SMPDL3B-205ENST00000548116 FAM9AQ8IZU1 332 aaPredicted RBP22.43■■□□□ 1.18
SMPDL3B-205ENST00000548116 CUX1P39880 1505 aa22.42■■□□□ 1.18
SMPDL3B-205ENST00000548116 FANCD2Q9BXW9 1451 aa22.41■■□□□ 1.18
SMPDL3B-205ENST00000548116 LOC105371045A0A1W2PR82 267 aa22.41■■□□□ 1.18
SMPDL3B-205ENST00000548116 SOGA1O94964 1423 aa22.37■■□□□ 1.17
SMPDL3B-205ENST00000548116 RUSC2Q8N2Y8 1516 aa22.31■■□□□ 1.16
SMPDL3B-205ENST00000548116 EEA1Q15075 1411 aa22.28■■□□□ 1.16
SMPDL3B-205ENST00000548116 PDS5BQ9NTI5 1447 aa22.26■■□□□ 1.15
SMPDL3B-205ENST00000548116 CEP164Q9UPV0 1460 aa22.25■■□□□ 1.15
SMPDL3B-205ENST00000548116 KIF21AQ7Z4S6 1674 aa22.2■■□□□ 1.14
SMPDL3B-205ENST00000548116 DNMBPQ6XZF7 1577 aa22.2■■□□□ 1.14
SMPDL3B-205ENST00000548116 CSRNP3Q8WYN3 585 aa22.18■■□□□ 1.14
SMPDL3B-205ENST00000548116 TOPBP1Q92547 1522 aa22.17■■□□□ 1.14
SMPDL3B-205ENST00000548116 FGD5Q6ZNL6 1462 aa22.16■■□□□ 1.14
SMPDL3B-205ENST00000548116 URB2Q14146 1524 aaKnown RBP22.16■■□□□ 1.14
SMPDL3B-205ENST00000548116 EHMT2Q96KQ7 1210 aa22.12■■□□□ 1.13
SMPDL3B-205ENST00000548116 POLA1P09884 1462 aaPredicted RBP22.07■■□□□ 1.12
SMPDL3B-205ENST00000548116 KIF27Q86VH2 1401 aa22.05■■□□□ 1.12
SMPDL3B-205ENST00000548116 KIF21BO75037 1637 aa22.01■■□□□ 1.11
SMPDL3B-205ENST00000548116 CUX2O14529 1486 aa22.01■■□□□ 1.11
SMPDL3B-205ENST00000548116 MRC2Q9UBG0 1479 aa22■■□□□ 1.11
SMPDL3B-205ENST00000548116 RAD54L2Q9Y4B4 1467 aa22■■□□□ 1.11
SMPDL3B-205ENST00000548116 GOLGA3Q08378 1498 aa21.97■■□□□ 1.11
SMPDL3B-205ENST00000548116 ABCA10Q8WWZ4 1543 aa21.97■■□□□ 1.11
SMPDL3B-205ENST00000548116 PRXQ9BXM0 1461 aa21.93■■□□□ 1.1
SMPDL3B-205ENST00000548116 TNIKQ9UKE5 1360 aa21.92■■□□□ 1.1
SMPDL3B-205ENST00000548116 RAPGEF2Q9Y4G8 1499 aa21.92■■□□□ 1.1
SMPDL3B-205ENST00000548116 WDR97A6NE52 1622 aa21.91■■□□□ 1.1
SMPDL3B-205ENST00000548116 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
SMPDL3B-205ENST00000548116 WDR62O43379 1518 aa21.9■■□□□ 1.1
SMPDL3B-205ENST00000548116 IGF1RP08069 1367 aa21.9■■□□□ 1.1
SMPDL3B-205ENST00000548116 ERICH3Q5RHP9 1530 aa21.87■■□□□ 1.09
SMPDL3B-205ENST00000548116 TARBP1Q13395 1621 aaKnown RBP21.86■■□□□ 1.09
SMPDL3B-205ENST00000548116 UBTFP17480 764 aaKnown RBP21.86■■□□□ 1.09
SMPDL3B-205ENST00000548116 THOC2Q8NI27 1593 aaKnown RBP21.85■■□□□ 1.09
SMPDL3B-205ENST00000548116 CEP162Q5TB80 1403 aa21.8■■□□□ 1.08
SMPDL3B-205ENST00000548116 ABCA5Q8WWZ7 1642 aa21.8■■□□□ 1.08
SMPDL3B-205ENST00000548116 TDRD9Q8NDG6 1382 aaKnown RBP21.78■■□□□ 1.08
SMPDL3B-205ENST00000548116 CARMIL1Q5VZK9 1371 aa21.75■■□□□ 1.07
SMPDL3B-205ENST00000548116 GAPVD1Q14C86 1478 aa21.73■■□□□ 1.07
SMPDL3B-205ENST00000548116 IFT140Q96RY7 1462 aa21.73■■□□□ 1.07
SMPDL3B-205ENST00000548116 CUL7Q14999 1698 aa21.69■■□□□ 1.06
SMPDL3B-205ENST00000548116 AQRO60306 1485 aaKnown RBP eCLIP21.65■■□□□ 1.06
SMPDL3B-205ENST00000548116 ZNF608Q9ULD9 1512 aaPredicted RBP21.65■■□□□ 1.06
SMPDL3B-205ENST00000548116 CLIP1P30622 1438 aa21.63■■□□□ 1.05
SMPDL3B-205ENST00000548116 PBRM1Q86U86 1689 aa21.62■■□□□ 1.05
SMPDL3B-205ENST00000548116 GRIN2BQ13224 1484 aa21.56■■□□□ 1.04
SMPDL3B-205ENST00000548116 EIF4G3O43432 1585 aaKnown RBP21.55■■□□□ 1.04
SMPDL3B-205ENST00000548116 RANGAP1P46060 587 aaPredicted RBP21.52■■□□□ 1.04
SMPDL3B-205ENST00000548116 ADAMTS12P58397 1594 aa21.51■■□□□ 1.03
SMPDL3B-205ENST00000548116 FHAD1B1AJZ9 1412 aa21.5■■□□□ 1.03
SMPDL3B-205ENST00000548116 ARAP1Q96P48 1450 aa21.46■■□□□ 1.03
SMPDL3B-205ENST00000548116 ARHGAP35Q9NRY4 1499 aa21.45■■□□□ 1.02
SMPDL3B-205ENST00000548116 CTTNBP2Q8WZ74 1663 aa21.45■■□□□ 1.02
SMPDL3B-205ENST00000548116 VPS8Q8N3P4 1428 aa21.45■■□□□ 1.02
SMPDL3B-205ENST00000548116 SNAPC4Q5SXM2 1469 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms