RNA–Protein interactions for RNA: ENST00000547951.1

USP44-204, Transcript of ubiquitin specific peptidase 44, humanhuman

TSL 3

Gene USP44, Length 685 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-204ENST00000547951 NISCHQ9Y2I1 1504 aa53.42■■■■■ 6.14
USP44-204ENST00000547951 CCDC180Q9P1Z9 1646 aa47.76■■■■■ 5.24
USP44-204ENST00000547951 ABCC9O60706 1549 aa47.54■■■■■ 5.2
USP44-204ENST00000547951 RB1CC1Q8TDY2 1594 aa45.29■■■■■ 4.84
USP44-204ENST00000547951 NACADO15069 1562 aa45.04■■■■■ 4.8
USP44-204ENST00000547951 DCAF8L2P0C7V8 631 aa44.95■■■■■ 4.79
USP44-204ENST00000547951 MYO15BQ96JP2 1530 aa44.49■■■■■ 4.71
USP44-204ENST00000547951 UNC13AQ9UPW8 1703 aa44.41■■■■■ 4.7
USP44-204ENST00000547951 DNAJC5BQ9UF47 199 aa44.36■■■■■ 4.69
USP44-204ENST00000547951 ZCCHC6Q5VYS8 1495 aaKnown RBP44.35■■■■■ 4.69
USP44-204ENST00000547951 PABPN1Q86U42 306 aaKnown RBP eCLIP44.32■■■■■ 4.69
USP44-204ENST00000547951 BICRAQ9NZM4 1560 aa44.08■■■■■ 4.65
USP44-204ENST00000547951 DCAF1Q9Y4B6 1507 aa44.07■■■■■ 4.65
USP44-204ENST00000547951 SCRIBQ14160 1630 aa43.64■■■■■ 4.58
USP44-204ENST00000547951 SHROOM4Q9ULL8 1493 aa43.32■■■■■ 4.52
USP44-204ENST00000547951 CC2D2AQ9P2K1 1620 aa42.94■■■■■ 4.46
USP44-204ENST00000547951 EIF4G1Q04637 1599 aaKnown RBP42.91■■■■■ 4.46
USP44-204ENST00000547951 CECR2Q9BXF3 1484 aa42.74■■■■■ 4.43
USP44-204ENST00000547951 SMARCA4P51532 1647 aa41.62■■■■■ 4.25
USP44-204ENST00000547951 NCAPD3P42695 1498 aa41.6■■■■■ 4.25
USP44-204ENST00000547951 ATAD2BQ9ULI0 1458 aa41.56■■■■■ 4.24
USP44-204ENST00000547951 SMARCA2P51531 1590 aa41.41■■■■■ 4.22
USP44-204ENST00000547951 BAZ1AQ9NRL2 1556 aaPredicted RBP41.4■■■■■ 4.22
USP44-204ENST00000547951 HMGXB3Q12766 1538 aa41.32■■■■■ 4.2
USP44-204ENST00000547951 MROH2BQ7Z745 1585 aa41.23■■■■■ 4.19
USP44-204ENST00000547951 PEG3Q9GZU2 1588 aa41.17■■■■■ 4.18
USP44-204ENST00000547951 BAZ1BQ9UIG0 1483 aaKnown RBP41.15■■■■■ 4.18
USP44-204ENST00000547951 NESP48681 1621 aa40.97■■■■■ 4.15
USP44-204ENST00000547951 ERCC6Q03468 1493 aa40.94■■■■■ 4.14
USP44-204ENST00000547951 WIZO95785 1651 aa40.76■■■■■ 4.12
USP44-204ENST00000547951 CUX2O14529 1486 aa40.71■■■■■ 4.11
USP44-204ENST00000547951 LAMC3Q9Y6N6 1575 aa40.6■■■■■ 4.09
USP44-204ENST00000547951 THOC2Q8NI27 1593 aaKnown RBP40.45■■■■■ 4.07
USP44-204ENST00000547951 RSF1Q96T23 1441 aaPredicted RBP40.45■■■■■ 4.07
USP44-204ENST00000547951 KIF21AQ7Z4S6 1674 aa40.45■■■■■ 4.07
USP44-204ENST00000547951 DNAJC5Q9H3Z4 198 aa40.37■■■■■ 4.05
USP44-204ENST00000547951 CADPSQ9ULU8 1353 aa40.35■■■■■ 4.05
USP44-204ENST00000547951 PDS5BQ9NTI5 1447 aa40.32■■■■■ 4.04
USP44-204ENST00000547951 TOP2AP11388 1531 aaKnown RBP40.2■■■■■ 4.03
USP44-204ENST00000547951 MRC2Q9UBG0 1479 aa40.02■■■■■ 4
USP44-204ENST00000547951 CFTRP13569 1480 aa39.98■■■■□ 3.99
USP44-204ENST00000547951 WDR62O43379 1518 aa39.93■■■■□ 3.98
USP44-204ENST00000547951 FANCD2Q9BXW9 1451 aa39.93■■■■□ 3.98
USP44-204ENST00000547951 CEP164Q9UPV0 1460 aa39.92■■■■□ 3.98
USP44-204ENST00000547951 CCDC88BA6NC98 1476 aa39.76■■■■□ 3.96
USP44-204ENST00000547951 PRDM2Q13029 1718 aa39.64■■■■□ 3.94
USP44-204ENST00000547951 URB2Q14146 1524 aaKnown RBP39.64■■■■□ 3.94
USP44-204ENST00000547951 TOPBP1Q92547 1522 aa39.22■■■■□ 3.87
USP44-204ENST00000547951 ZNF608Q9ULD9 1512 aaPredicted RBP39.11■■■■□ 3.85
USP44-204ENST00000547951 DNMBPQ6XZF7 1577 aa39.09■■■■□ 3.85
USP44-204ENST00000547951 IFT140Q96RY7 1462 aa39.09■■■■□ 3.85
USP44-204ENST00000547951 ABCC8Q09428 1581 aa39.03■■■■□ 3.84
USP44-204ENST00000547951 SUPT5HO00267 1087 aaKnown RBP38.92■■■■□ 3.82
USP44-204ENST00000547951 OSCARQ8IYS5 282 aa38.91■■■■□ 3.82
USP44-204ENST00000547951 TARBP1Q13395 1621 aaKnown RBP38.89■■■■□ 3.82
USP44-204ENST00000547951 EIF4G3O43432 1585 aaKnown RBP38.88■■■■□ 3.81
USP44-204ENST00000547951 POLA1P09884 1462 aaPredicted RBP38.86■■■■□ 3.81
USP44-204ENST00000547951 TRIM41Q8WV44 630 aa38.79■■■■□ 3.8
USP44-204ENST00000547951 AQRO60306 1485 aaKnown RBP eCLIP38.77■■■■□ 3.8
USP44-204ENST00000547951 RAD54L2Q9Y4B4 1467 aa38.74■■■■□ 3.79
USP44-204ENST00000547951 CUX1P39880 1505 aa38.71■■■■□ 3.79
USP44-204ENST00000547951 FGD5Q6ZNL6 1462 aa38.66■■■■□ 3.78
USP44-204ENST00000547951 SOGA1O94964 1423 aa38.63■■■■□ 3.78
USP44-204ENST00000547951 TDRD9Q8NDG6 1382 aaKnown RBP38.57■■■■□ 3.77
USP44-204ENST00000547951 CHD1O14646 1710 aa38.56■■■■□ 3.76
USP44-204ENST00000547951 RIMBP3CA6NJZ7 1639 aa38.49■■■■□ 3.75
USP44-204ENST00000547951 RIMBP3BA6NNM3 1639 aa38.49■■■■□ 3.75
USP44-204ENST00000547951 RIMBP3Q9UFD9 1639 aa38.49■■■■□ 3.75
USP44-204ENST00000547951 FBLN2P98095 1184 aa38.4■■■■□ 3.74
USP44-204ENST00000547951 WDR97A6NE52 1622 aa38.39■■■■□ 3.74
USP44-204ENST00000547951 SNAPC4Q5SXM2 1469 aa38.37■■■■□ 3.73
USP44-204ENST00000547951 ARHGEF11O15085 1522 aa38.37■■■■□ 3.73
USP44-204ENST00000547951 GRIN2BQ13224 1484 aa38.26■■■■□ 3.72
USP44-204ENST00000547951 MAGI1Q96QZ7 1491 aaPredicted RBP38.21■■■■□ 3.71
USP44-204ENST00000547951 PBRM1Q86U86 1689 aa38.2■■■■□ 3.71
USP44-204ENST00000547951 ABCA10Q8WWZ4 1543 aa38.19■■■■□ 3.7
USP44-204ENST00000547951 GAPVD1Q14C86 1478 aa38.18■■■■□ 3.7
USP44-204ENST00000547951 ABCA5Q8WWZ7 1642 aa38.16■■■■□ 3.7
USP44-204ENST00000547951 SYNJ1O43426 1573 aa38.16■■■■□ 3.7
USP44-204ENST00000547951 BIVM-ERCC5R4GMW8 1640 aa38.14■■■■□ 3.7
USP44-204ENST00000547951 TOP2BQ02880 1626 aa38.12■■■■□ 3.69
USP44-204ENST00000547951 CHMP7Q8WUX9 453 aaPredicted RBP38.12■■■■□ 3.69
USP44-204ENST00000547951 WRNQ14191 1432 aaPredicted RBP eCLIP38.12■■■■□ 3.69
USP44-204ENST00000547951 SYNJ2O15056 1496 aa38.09■■■■□ 3.69
USP44-204ENST00000547951 CLASP1Q7Z460 1538 aa38.08■■■■□ 3.69
USP44-204ENST00000547951 CYB5RLQ6IPT4 315 aa38.05■■■■□ 3.68
USP44-204ENST00000547951 ARAP1Q96P48 1450 aa38.04■■■■□ 3.68
USP44-204ENST00000547951 ADAMTS12P58397 1594 aa37.85■■■■□ 3.65
USP44-204ENST00000547951 GRIN2AQ12879 1464 aa37.79■■■■□ 3.64
USP44-204ENST00000547951 CEP170Q5SW79 1584 aa37.7■■■■□ 3.63
USP44-204ENST00000547951 ERICH3Q5RHP9 1530 aa37.7■■■■□ 3.63
USP44-204ENST00000547951 FHAD1B1AJZ9 1412 aa37.69■■■■□ 3.62
USP44-204ENST00000547951 NUP160Q12769 1436 aa37.65■■■■□ 3.62
USP44-204ENST00000547951 ERCC6L2Q5T890 1561 aa37.61■■■■□ 3.61
USP44-204ENST00000547951 TRHP20396 242 aaPredicted RBP37.48■■■■□ 3.59
USP44-204ENST00000547951 SHROOM2Q13796 1616 aa37.47■■■■□ 3.59
USP44-204ENST00000547951 KIF27Q86VH2 1401 aa37.34■■■■□ 3.57
USP44-204ENST00000547951 IGF1RP08069 1367 aa37.33■■■■□ 3.57
USP44-204ENST00000547951 RUSC2Q8N2Y8 1516 aa37.31■■■■□ 3.56
USP44-204ENST00000547951 PRG4Q92954 1404 aaPredicted RBP37.27■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms