RNA–Protein interactions for RNA: ENST00000547862.6

SSH1-207, Transcript of slingshot protein phosphatase 1, humanhuman

TSL 5

Gene SSH1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-207ENST00000547862 NISCHQ9Y2I1 1504 aa51.06■■■■■ 5.76
SSH1-207ENST00000547862 CCDC180Q9P1Z9 1646 aa45.92■■■■■ 4.94
SSH1-207ENST00000547862 ABCC9O60706 1549 aa45.88■■■■■ 4.94
SSH1-207ENST00000547862 RB1CC1Q8TDY2 1594 aa43.65■■■■■ 4.58
SSH1-207ENST00000547862 NACADO15069 1562 aa43.29■■■■■ 4.52
SSH1-207ENST00000547862 DCAF8L2P0C7V8 631 aa43.13■■■■■ 4.49
SSH1-207ENST00000547862 DNAJC5BQ9UF47 199 aa42.84■■■■■ 4.45
SSH1-207ENST00000547862 UNC13AQ9UPW8 1703 aa42.83■■■■■ 4.45
SSH1-207ENST00000547862 PABPN1Q86U42 306 aaKnown RBP eCLIP42.65■■■■■ 4.42
SSH1-207ENST00000547862 MYO15BQ96JP2 1530 aa42.59■■■■■ 4.41
SSH1-207ENST00000547862 BICRAQ9NZM4 1560 aa42.37■■■■■ 4.37
SSH1-207ENST00000547862 ZCCHC6Q5VYS8 1495 aaKnown RBP42.36■■■■■ 4.37
SSH1-207ENST00000547862 DCAF1Q9Y4B6 1507 aa42.1■■■■■ 4.33
SSH1-207ENST00000547862 SCRIBQ14160 1630 aa41.94■■■■■ 4.3
SSH1-207ENST00000547862 SHROOM4Q9ULL8 1493 aa41.68■■■■■ 4.26
SSH1-207ENST00000547862 CC2D2AQ9P2K1 1620 aa41.45■■■■■ 4.23
SSH1-207ENST00000547862 EIF4G1Q04637 1599 aaKnown RBP41.34■■■■■ 4.21
SSH1-207ENST00000547862 CECR2Q9BXF3 1484 aa41.27■■■■■ 4.2
SSH1-207ENST00000547862 SMARCA4P51532 1647 aa39.93■■■■□ 3.98
SSH1-207ENST00000547862 NCAPD3P42695 1498 aa39.88■■■■□ 3.97
SSH1-207ENST00000547862 ATAD2BQ9ULI0 1458 aa39.84■■■■□ 3.97
SSH1-207ENST00000547862 SMARCA2P51531 1590 aa39.78■■■■□ 3.96
SSH1-207ENST00000547862 HMGXB3Q12766 1538 aa39.7■■■■□ 3.95
SSH1-207ENST00000547862 BAZ1AQ9NRL2 1556 aaPredicted RBP39.67■■■■□ 3.94
SSH1-207ENST00000547862 ERCC6Q03468 1493 aa39.62■■■■□ 3.93
SSH1-207ENST00000547862 BAZ1BQ9UIG0 1483 aaKnown RBP39.54■■■■□ 3.92
SSH1-207ENST00000547862 CUX2O14529 1486 aa39.43■■■■□ 3.9
SSH1-207ENST00000547862 NESP48681 1621 aa39.42■■■■□ 3.9
SSH1-207ENST00000547862 PEG3Q9GZU2 1588 aa39.42■■■■□ 3.9
SSH1-207ENST00000547862 MROH2BQ7Z745 1585 aa39.4■■■■□ 3.9
SSH1-207ENST00000547862 DNAJC5Q9H3Z4 198 aa39.25■■■■□ 3.87
SSH1-207ENST00000547862 LAMC3Q9Y6N6 1575 aa39.11■■■■□ 3.85
SSH1-207ENST00000547862 THOC2Q8NI27 1593 aaKnown RBP39.06■■■■□ 3.84
SSH1-207ENST00000547862 KIF21AQ7Z4S6 1674 aa39.03■■■■□ 3.84
SSH1-207ENST00000547862 WIZO95785 1651 aa39.02■■■■□ 3.84
SSH1-207ENST00000547862 PDS5BQ9NTI5 1447 aa38.8■■■■□ 3.8
SSH1-207ENST00000547862 CADPSQ9ULU8 1353 aa38.7■■■■□ 3.78
SSH1-207ENST00000547862 MRC2Q9UBG0 1479 aa38.55■■■■□ 3.76
SSH1-207ENST00000547862 RSF1Q96T23 1441 aaPredicted RBP38.51■■■■□ 3.76
SSH1-207ENST00000547862 WDR62O43379 1518 aa38.46■■■■□ 3.75
SSH1-207ENST00000547862 TOP2AP11388 1531 aaKnown RBP38.46■■■■□ 3.75
SSH1-207ENST00000547862 CEP164Q9UPV0 1460 aa38.43■■■■□ 3.74
SSH1-207ENST00000547862 FANCD2Q9BXW9 1451 aa38.35■■■■□ 3.73
SSH1-207ENST00000547862 CFTRP13569 1480 aa38.28■■■■□ 3.72
SSH1-207ENST00000547862 PRDM2Q13029 1718 aa38.17■■■■□ 3.7
SSH1-207ENST00000547862 URB2Q14146 1524 aaKnown RBP38.05■■■■□ 3.68
SSH1-207ENST00000547862 CCDC88BA6NC98 1476 aa37.96■■■■□ 3.67
SSH1-207ENST00000547862 TRIM41Q8WV44 630 aa37.76■■■■□ 3.64
SSH1-207ENST00000547862 TOPBP1Q92547 1522 aa37.64■■■■□ 3.62
SSH1-207ENST00000547862 IFT140Q96RY7 1462 aa37.59■■■■□ 3.61
SSH1-207ENST00000547862 ZNF608Q9ULD9 1512 aaPredicted RBP37.58■■■■□ 3.61
SSH1-207ENST00000547862 OSCARQ8IYS5 282 aa37.55■■■■□ 3.6
SSH1-207ENST00000547862 DNMBPQ6XZF7 1577 aa37.54■■■■□ 3.6
SSH1-207ENST00000547862 EIF4G3O43432 1585 aaKnown RBP37.48■■■■□ 3.59
SSH1-207ENST00000547862 ABCC8Q09428 1581 aa37.46■■■■□ 3.59
SSH1-207ENST00000547862 TARBP1Q13395 1621 aaKnown RBP37.32■■■■□ 3.57
SSH1-207ENST00000547862 RIMBP3CA6NJZ7 1639 aa37.28■■■■□ 3.56
SSH1-207ENST00000547862 RIMBP3BA6NNM3 1639 aa37.28■■■■□ 3.56
SSH1-207ENST00000547862 RIMBP3Q9UFD9 1639 aa37.28■■■■□ 3.56
SSH1-207ENST00000547862 CHD1O14646 1710 aa37.26■■■■□ 3.56
SSH1-207ENST00000547862 POLA1P09884 1462 aaPredicted RBP37.26■■■■□ 3.55
SSH1-207ENST00000547862 AQRO60306 1485 aaKnown RBP eCLIP37.21■■■■□ 3.55
SSH1-207ENST00000547862 RAD54L2Q9Y4B4 1467 aa37.14■■■■□ 3.54
SSH1-207ENST00000547862 ARHGEF11O15085 1522 aa37.1■■■■□ 3.53
SSH1-207ENST00000547862 FGD5Q6ZNL6 1462 aa37.07■■■■□ 3.52
SSH1-207ENST00000547862 SOGA1O94964 1423 aa37.03■■■■□ 3.52
SSH1-207ENST00000547862 CUX1P39880 1505 aa37.03■■■■□ 3.52
SSH1-207ENST00000547862 FBLN2P98095 1184 aa37■■■■□ 3.51
SSH1-207ENST00000547862 TDRD9Q8NDG6 1382 aaKnown RBP36.98■■■■□ 3.51
SSH1-207ENST00000547862 SUPT5HO00267 1087 aaKnown RBP36.92■■■■□ 3.5
SSH1-207ENST00000547862 SNAPC4Q5SXM2 1469 aa36.91■■■■□ 3.5
SSH1-207ENST00000547862 WDR97A6NE52 1622 aa36.9■■■■□ 3.5
SSH1-207ENST00000547862 PBRM1Q86U86 1689 aa36.8■■■■□ 3.48
SSH1-207ENST00000547862 CYB5RLQ6IPT4 315 aa36.75■■■■□ 3.47
SSH1-207ENST00000547862 ARAP1Q96P48 1450 aa36.75■■■■□ 3.47
SSH1-207ENST00000547862 GRIN2BQ13224 1484 aa36.74■■■■□ 3.47
SSH1-207ENST00000547862 MAGI1Q96QZ7 1491 aaPredicted RBP36.74■■■■□ 3.47
SSH1-207ENST00000547862 SYNJ1O43426 1573 aa36.69■■■■□ 3.46
SSH1-207ENST00000547862 CLASP1Q7Z460 1538 aa36.68■■■■□ 3.46
SSH1-207ENST00000547862 CHMP7Q8WUX9 453 aaPredicted RBP36.65■■■■□ 3.46
SSH1-207ENST00000547862 GAPVD1Q14C86 1478 aa36.62■■■■□ 3.45
SSH1-207ENST00000547862 ABCA5Q8WWZ7 1642 aa36.62■■■■□ 3.45
SSH1-207ENST00000547862 SYNJ2O15056 1496 aa36.62■■■■□ 3.45
SSH1-207ENST00000547862 ABCA10Q8WWZ4 1543 aa36.57■■■■□ 3.44
SSH1-207ENST00000547862 BIVM-ERCC5R4GMW8 1640 aa36.49■■■■□ 3.43
SSH1-207ENST00000547862 TOP2BQ02880 1626 aa36.44■■■■□ 3.42
SSH1-207ENST00000547862 WRNQ14191 1432 aaPredicted RBP eCLIP36.41■■■■□ 3.42
SSH1-207ENST00000547862 TRHP20396 242 aaPredicted RBP36.4■■■■□ 3.42
SSH1-207ENST00000547862 ADAMTS12P58397 1594 aa36.37■■■■□ 3.41
SSH1-207ENST00000547862 GRIN2AQ12879 1464 aa36.3■■■■□ 3.4
SSH1-207ENST00000547862 CEP170Q5SW79 1584 aa36.23■■■■□ 3.39
SSH1-207ENST00000547862 ERCC6L2Q5T890 1561 aa36.18■■■■□ 3.38
SSH1-207ENST00000547862 ERICH3Q5RHP9 1530 aa36.13■■■■□ 3.37
SSH1-207ENST00000547862 FHAD1B1AJZ9 1412 aa36.12■■■■□ 3.37
SSH1-207ENST00000547862 NUP160Q12769 1436 aa36.11■■■■□ 3.37
SSH1-207ENST00000547862 SHROOM2Q13796 1616 aa36.03■■■■□ 3.36
SSH1-207ENST00000547862 RUSC2Q8N2Y8 1516 aa35.86■■■■□ 3.33
SSH1-207ENST00000547862 PRG4Q92954 1404 aaPredicted RBP35.8■■■■□ 3.32
SSH1-207ENST00000547862 CUL7Q14999 1698 aa35.71■■■■□ 3.31
SSH1-207ENST00000547862 JPH4Q96JJ6 628 aa35.67■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms