RNA–Protein interactions for RNA: ENST00000547369.5

GCN1-203, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-203ENST00000547369 NISCHQ9Y2I1 1504 aa46.63■■■■■ 5.05
GCN1-203ENST00000547369 CCDC180Q9P1Z9 1646 aa41.81■■■■■ 4.28
GCN1-203ENST00000547369 ABCC9O60706 1549 aa41.73■■■■■ 4.27
GCN1-203ENST00000547369 RB1CC1Q8TDY2 1594 aa39.76■■■■□ 3.96
GCN1-203ENST00000547369 NACADO15069 1562 aa39.51■■■■□ 3.92
GCN1-203ENST00000547369 DCAF8L2P0C7V8 631 aa39.32■■■■□ 3.89
GCN1-203ENST00000547369 DNAJC5BQ9UF47 199 aa39.07■■■■□ 3.85
GCN1-203ENST00000547369 MYO15BQ96JP2 1530 aa39■■■■□ 3.83
GCN1-203ENST00000547369 UNC13AQ9UPW8 1703 aa38.87■■■■□ 3.81
GCN1-203ENST00000547369 PABPN1Q86U42 306 aaKnown RBP eCLIP38.86■■■■□ 3.81
GCN1-203ENST00000547369 ZCCHC6Q5VYS8 1495 aaKnown RBP38.66■■■■□ 3.78
GCN1-203ENST00000547369 BICRAQ9NZM4 1560 aa38.6■■■■□ 3.77
GCN1-203ENST00000547369 DCAF1Q9Y4B6 1507 aa38.53■■■■□ 3.76
GCN1-203ENST00000547369 SHROOM4Q9ULL8 1493 aa38.09■■■■□ 3.69
GCN1-203ENST00000547369 SCRIBQ14160 1630 aa38.09■■■■□ 3.69
GCN1-203ENST00000547369 CC2D2AQ9P2K1 1620 aa37.71■■■■□ 3.63
GCN1-203ENST00000547369 EIF4G1Q04637 1599 aaKnown RBP37.64■■■■□ 3.62
GCN1-203ENST00000547369 CECR2Q9BXF3 1484 aa37.58■■■■□ 3.61
GCN1-203ENST00000547369 NCAPD3P42695 1498 aa36.48■■■■□ 3.43
GCN1-203ENST00000547369 ATAD2BQ9ULI0 1458 aa36.37■■■■□ 3.41
GCN1-203ENST00000547369 SMARCA4P51532 1647 aa36.36■■■■□ 3.41
GCN1-203ENST00000547369 SMARCA2P51531 1590 aa36.28■■■■□ 3.4
GCN1-203ENST00000547369 HMGXB3Q12766 1538 aa36.21■■■■□ 3.39
GCN1-203ENST00000547369 BAZ1AQ9NRL2 1556 aaPredicted RBP36.19■■■■□ 3.38
GCN1-203ENST00000547369 ERCC6Q03468 1493 aa36.03■■■■□ 3.36
GCN1-203ENST00000547369 BAZ1BQ9UIG0 1483 aaKnown RBP36.03■■■■□ 3.36
GCN1-203ENST00000547369 PEG3Q9GZU2 1588 aa36.01■■■■□ 3.35
GCN1-203ENST00000547369 CUX2O14529 1486 aa35.94■■■■□ 3.34
GCN1-203ENST00000547369 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
GCN1-203ENST00000547369 NESP48681 1621 aa35.86■■■■□ 3.33
GCN1-203ENST00000547369 DNAJC5Q9H3Z4 198 aa35.83■■■■□ 3.33
GCN1-203ENST00000547369 LAMC3Q9Y6N6 1575 aa35.64■■■■□ 3.3
GCN1-203ENST00000547369 WIZO95785 1651 aa35.5■■■■□ 3.27
GCN1-203ENST00000547369 THOC2Q8NI27 1593 aaKnown RBP35.5■■■■□ 3.27
GCN1-203ENST00000547369 PDS5BQ9NTI5 1447 aa35.43■■■■□ 3.26
GCN1-203ENST00000547369 KIF21AQ7Z4S6 1674 aa35.42■■■■□ 3.26
GCN1-203ENST00000547369 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.25
GCN1-203ENST00000547369 RSF1Q96T23 1441 aaPredicted RBP35.22■■■■□ 3.23
GCN1-203ENST00000547369 MRC2Q9UBG0 1479 aa35.12■■■■□ 3.21
GCN1-203ENST00000547369 TOP2AP11388 1531 aaKnown RBP35.06■■■■□ 3.2
GCN1-203ENST00000547369 WDR62O43379 1518 aa35.03■■■■□ 3.2
GCN1-203ENST00000547369 CEP164Q9UPV0 1460 aa35■■■■□ 3.19
GCN1-203ENST00000547369 CFTRP13569 1480 aa34.98■■■■□ 3.19
GCN1-203ENST00000547369 FANCD2Q9BXW9 1451 aa34.97■■■■□ 3.19
GCN1-203ENST00000547369 URB2Q14146 1524 aaKnown RBP34.67■■■■□ 3.14
GCN1-203ENST00000547369 CCDC88BA6NC98 1476 aa34.66■■■■□ 3.14
GCN1-203ENST00000547369 PRDM2Q13029 1718 aa34.66■■■■□ 3.14
GCN1-203ENST00000547369 OSCARQ8IYS5 282 aa34.32■■■■□ 3.08
GCN1-203ENST00000547369 TOPBP1Q92547 1522 aa34.31■■■■□ 3.08
GCN1-203ENST00000547369 IFT140Q96RY7 1462 aa34.3■■■■□ 3.08
GCN1-203ENST00000547369 TRIM41Q8WV44 630 aa34.29■■■■□ 3.08
GCN1-203ENST00000547369 ABCC8Q09428 1581 aa34.26■■■■□ 3.07
GCN1-203ENST00000547369 ZNF608Q9ULD9 1512 aaPredicted RBP34.23■■■■□ 3.07
GCN1-203ENST00000547369 DNMBPQ6XZF7 1577 aa34.2■■■■□ 3.07
GCN1-203ENST00000547369 EIF4G3O43432 1585 aaKnown RBP34.05■■■■□ 3.04
GCN1-203ENST00000547369 TARBP1Q13395 1621 aaKnown RBP34.01■■■■□ 3.03
GCN1-203ENST00000547369 POLA1P09884 1462 aaPredicted RBP33.96■■■■□ 3.03
GCN1-203ENST00000547369 AQRO60306 1485 aaKnown RBP eCLIP33.93■■■■□ 3.022e-7■■■■■ 29.4
GCN1-203ENST00000547369 RIMBP3CA6NJZ7 1639 aa33.86■■■■□ 3.01
GCN1-203ENST00000547369 RIMBP3BA6NNM3 1639 aa33.86■■■■□ 3.01
GCN1-203ENST00000547369 RIMBP3Q9UFD9 1639 aa33.86■■■■□ 3.01
GCN1-203ENST00000547369 RAD54L2Q9Y4B4 1467 aa33.84■■■■□ 3.01
GCN1-203ENST00000547369 SOGA1O94964 1423 aa33.82■■■■□ 3
GCN1-203ENST00000547369 CHD1O14646 1710 aa33.79■■■■□ 3
GCN1-203ENST00000547369 FGD5Q6ZNL6 1462 aa33.77■■■■□ 3
GCN1-203ENST00000547369 ARHGEF11O15085 1522 aa33.76■■■■□ 3
GCN1-203ENST00000547369 CUX1P39880 1505 aa33.75■■■□□ 2.99
GCN1-203ENST00000547369 TDRD9Q8NDG6 1382 aaKnown RBP33.73■■■□□ 2.99
GCN1-203ENST00000547369 SUPT5HO00267 1087 aaKnown RBP33.71■■■□□ 2.99
GCN1-203ENST00000547369 FBLN2P98095 1184 aa33.7■■■□□ 2.99
GCN1-203ENST00000547369 WDR97A6NE52 1622 aa33.67■■■□□ 2.98
GCN1-203ENST00000547369 SNAPC4Q5SXM2 1469 aa33.59■■■□□ 2.97
GCN1-203ENST00000547369 GRIN2BQ13224 1484 aa33.51■■■□□ 2.96
GCN1-203ENST00000547369 MAGI1Q96QZ7 1491 aaPredicted RBP33.51■■■□□ 2.96
GCN1-203ENST00000547369 CYB5RLQ6IPT4 315 aa33.51■■■□□ 2.95
GCN1-203ENST00000547369 CHMP7Q8WUX9 453 aaPredicted RBP33.47■■■□□ 2.95
GCN1-203ENST00000547369 ARAP1Q96P48 1450 aa33.43■■■□□ 2.94
GCN1-203ENST00000547369 GAPVD1Q14C86 1478 aa33.41■■■□□ 2.94
GCN1-203ENST00000547369 CLASP1Q7Z460 1538 aa33.4■■■□□ 2.94
GCN1-203ENST00000547369 PBRM1Q86U86 1689 aa33.39■■■□□ 2.94
GCN1-203ENST00000547369 SYNJ1O43426 1573 aa33.39■■■□□ 2.94
GCN1-203ENST00000547369 ABCA10Q8WWZ4 1543 aa33.39■■■□□ 2.94
GCN1-203ENST00000547369 SYNJ2O15056 1496 aa33.39■■■□□ 2.94
GCN1-203ENST00000547369 ABCA5Q8WWZ7 1642 aa33.33■■■□□ 2.93
GCN1-203ENST00000547369 WRNQ14191 1432 aaPredicted RBP eCLIP33.28■■■□□ 2.92
GCN1-203ENST00000547369 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
GCN1-203ENST00000547369 BIVM-ERCC5R4GMW8 1640 aa33.24■■■□□ 2.91
GCN1-203ENST00000547369 TRHP20396 242 aaPredicted RBP33.11■■■□□ 2.89
GCN1-203ENST00000547369 GRIN2AQ12879 1464 aa33.09■■■□□ 2.89
GCN1-203ENST00000547369 ADAMTS12P58397 1594 aa33.08■■■□□ 2.89
GCN1-203ENST00000547369 FHAD1B1AJZ9 1412 aa32.99■■■□□ 2.87
GCN1-203ENST00000547369 ERICH3Q5RHP9 1530 aa32.97■■■□□ 2.87
GCN1-203ENST00000547369 NUP160Q12769 1436 aa32.97■■■□□ 2.87
GCN1-203ENST00000547369 CEP170Q5SW79 1584 aa32.96■■■□□ 2.87
GCN1-203ENST00000547369 ERCC6L2Q5T890 1561 aa32.88■■■□□ 2.85
GCN1-203ENST00000547369 SHROOM2Q13796 1616 aa32.82■■■□□ 2.84
GCN1-203ENST00000547369 PRG4Q92954 1404 aaPredicted RBP32.65■■■□□ 2.82
GCN1-203ENST00000547369 JPH4Q96JJ6 628 aa32.64■■■□□ 2.82
GCN1-203ENST00000547369 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
GCN1-203ENST00000547369 KIF27Q86VH2 1401 aa32.6■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms