RNA–Protein interactions for RNA: ENST00000547019.1

R3HDM2-210, Transcript of R3H domain containing 2, humanhuman

TSL 3

Gene R3HDM2, Length 595 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM2-210ENST00000547019 NISCHQ9Y2I1 1504 aa25.53■■□□□ 1.68
R3HDM2-210ENST00000547019 ABCC9O60706 1549 aa23.8■■□□□ 1.4
R3HDM2-210ENST00000547019 CCDC180Q9P1Z9 1646 aa23.24■■□□□ 1.31
R3HDM2-210ENST00000547019 DNAJC5BQ9UF47 199 aa22.9■■□□□ 1.26
R3HDM2-210ENST00000547019 RB1CC1Q8TDY2 1594 aa22.33■■□□□ 1.17
R3HDM2-210ENST00000547019 UNC13AQ9UPW8 1703 aa22.07■■□□□ 1.12
R3HDM2-210ENST00000547019 NACADO15069 1562 aa22.03■■□□□ 1.12
R3HDM2-210ENST00000547019 PABPN1Q86U42 306 aaKnown RBP eCLIP22■■□□□ 1.11
R3HDM2-210ENST00000547019 BICRAQ9NZM4 1560 aa21.87■■□□□ 1.09
R3HDM2-210ENST00000547019 DCAF8L2P0C7V8 631 aa21.63■■□□□ 1.05
R3HDM2-210ENST00000547019 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
R3HDM2-210ENST00000547019 MYO15BQ96JP2 1530 aa21.51■■□□□ 1.03
R3HDM2-210ENST00000547019 CECR2Q9BXF3 1484 aa21.46■■□□□ 1.03
R3HDM2-210ENST00000547019 DNAJC5Q9H3Z4 198 aa21.35■■□□□ 1.01
R3HDM2-210ENST00000547019 SHROOM4Q9ULL8 1493 aa21.32■■□□□ 1
R3HDM2-210ENST00000547019 EIF4G1Q04637 1599 aaKnown RBP21.3■■□□□ 1
R3HDM2-210ENST00000547019 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
R3HDM2-210ENST00000547019 ZCCHC6Q5VYS8 1495 aaKnown RBP21.07■□□□□ 0.96
R3HDM2-210ENST00000547019 DCAF1Q9Y4B6 1507 aa21.03■□□□□ 0.96
R3HDM2-210ENST00000547019 CUX2O14529 1486 aa20.71■□□□□ 0.91
R3HDM2-210ENST00000547019 ERCC6Q03468 1493 aa20.5■□□□□ 0.87
R3HDM2-210ENST00000547019 NCAPD3P42695 1498 aa20.33■□□□□ 0.85
R3HDM2-210ENST00000547019 NESP48681 1621 aa20.33■□□□□ 0.84
R3HDM2-210ENST00000547019 THOC2Q8NI27 1593 aaKnown RBP20.29■□□□□ 0.84
R3HDM2-210ENST00000547019 ATAD2BQ9ULI0 1458 aa20.22■□□□□ 0.83
R3HDM2-210ENST00000547019 HMGXB3Q12766 1538 aa20.18■□□□□ 0.82
R3HDM2-210ENST00000547019 TRIM41Q8WV44 630 aa20.15■□□□□ 0.82
R3HDM2-210ENST00000547019 SMARCA4P51532 1647 aa20.12■□□□□ 0.81
R3HDM2-210ENST00000547019 KIF21AQ7Z4S6 1674 aa20.11■□□□□ 0.81
R3HDM2-210ENST00000547019 SMARCA2P51531 1590 aa20.1■□□□□ 0.81
R3HDM2-210ENST00000547019 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
R3HDM2-210ENST00000547019 BAZ1BQ9UIG0 1483 aaKnown RBP19.97■□□□□ 0.79
R3HDM2-210ENST00000547019 PEG3Q9GZU2 1588 aa19.9■□□□□ 0.78
R3HDM2-210ENST00000547019 BAZ1AQ9NRL2 1556 aaPredicted RBP19.83■□□□□ 0.77
R3HDM2-210ENST00000547019 PDS5BQ9NTI5 1447 aa19.8■□□□□ 0.76
R3HDM2-210ENST00000547019 WDR62O43379 1518 aa19.8■□□□□ 0.76
R3HDM2-210ENST00000547019 MRC2Q9UBG0 1479 aa19.77■□□□□ 0.76
R3HDM2-210ENST00000547019 MROH2BQ7Z745 1585 aa19.72■□□□□ 0.75
R3HDM2-210ENST00000547019 CADPSQ9ULU8 1353 aa19.65■□□□□ 0.74
R3HDM2-210ENST00000547019 RIMBP3CA6NJZ7 1639 aa19.59■□□□□ 0.73
R3HDM2-210ENST00000547019 RIMBP3BA6NNM3 1639 aa19.59■□□□□ 0.73
R3HDM2-210ENST00000547019 RIMBP3Q9UFD9 1639 aa19.59■□□□□ 0.73
R3HDM2-210ENST00000547019 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
R3HDM2-210ENST00000547019 OSCARQ8IYS5 282 aa19.54■□□□□ 0.72
R3HDM2-210ENST00000547019 WIZO95785 1651 aa19.5■□□□□ 0.71
R3HDM2-210ENST00000547019 FANCD2Q9BXW9 1451 aa19.48■□□□□ 0.71
R3HDM2-210ENST00000547019 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
R3HDM2-210ENST00000547019 ARHGEF11O15085 1522 aa19.41■□□□□ 0.7
R3HDM2-210ENST00000547019 CFTRP13569 1480 aa19.35■□□□□ 0.69
R3HDM2-210ENST00000547019 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
R3HDM2-210ENST00000547019 PRDM2Q13029 1718 aa19.26■□□□□ 0.67
R3HDM2-210ENST00000547019 CHD1O14646 1710 aa19.21■□□□□ 0.67
R3HDM2-210ENST00000547019 ARAP1Q96P48 1450 aa19.21■□□□□ 0.67
R3HDM2-210ENST00000547019 EIF4G3O43432 1585 aaKnown RBP19.19■□□□□ 0.66
R3HDM2-210ENST00000547019 CYB5RLQ6IPT4 315 aa19.17■□□□□ 0.66
R3HDM2-210ENST00000547019 IFT140Q96RY7 1462 aa19.16■□□□□ 0.66
R3HDM2-210ENST00000547019 TOP2AP11388 1531 aaKnown RBP19.14■□□□□ 0.65
R3HDM2-210ENST00000547019 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
R3HDM2-210ENST00000547019 TOPBP1Q92547 1522 aa19.08■□□□□ 0.64
R3HDM2-210ENST00000547019 RSF1Q96T23 1441 aaPredicted RBP19.02■□□□□ 0.64
R3HDM2-210ENST00000547019 TARBP1Q13395 1621 aaKnown RBP19.02■□□□□ 0.64
R3HDM2-210ENST00000547019 AQRO60306 1485 aaKnown RBP eCLIP18.98■□□□□ 0.631e-6■■■■□ 19.6
R3HDM2-210ENST00000547019 DNMBPQ6XZF7 1577 aa18.95■□□□□ 0.62
R3HDM2-210ENST00000547019 AEBP2Q6ZN18 517 aaPredicted RBP18.95■□□□□ 0.62
R3HDM2-210ENST00000547019 CLASP1Q7Z460 1538 aa18.92■□□□□ 0.62
R3HDM2-210ENST00000547019 CCDC88BA6NC98 1476 aa18.9■□□□□ 0.62
R3HDM2-210ENST00000547019 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
R3HDM2-210ENST00000547019 POLA1P09884 1462 aaPredicted RBP18.85■□□□□ 0.61
R3HDM2-210ENST00000547019 FBLN2P98095 1184 aa18.84■□□□□ 0.61
R3HDM2-210ENST00000547019 RAD54L2Q9Y4B4 1467 aa18.8■□□□□ 0.6
R3HDM2-210ENST00000547019 SNAPC4Q5SXM2 1469 aa18.79■□□□□ 0.6
R3HDM2-210ENST00000547019 SYNJ1O43426 1573 aa18.76■□□□□ 0.59
R3HDM2-210ENST00000547019 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
R3HDM2-210ENST00000547019 WDR97A6NE52 1622 aa18.68■□□□□ 0.58
R3HDM2-210ENST00000547019 GAPVD1Q14C86 1478 aa18.66■□□□□ 0.58
R3HDM2-210ENST00000547019 MAGI1Q96QZ7 1491 aaPredicted RBP18.66■□□□□ 0.58
R3HDM2-210ENST00000547019 SOGA1O94964 1423 aa18.66■□□□□ 0.58
R3HDM2-210ENST00000547019 FGD5Q6ZNL6 1462 aa18.65■□□□□ 0.58
R3HDM2-210ENST00000547019 PBRM1Q86U86 1689 aa18.64■□□□□ 0.57
R3HDM2-210ENST00000547019 ERCC6L2Q5T890 1561 aa18.64■□□□□ 0.57
R3HDM2-210ENST00000547019 SYNJ2O15056 1496 aa18.62■□□□□ 0.57
R3HDM2-210ENST00000547019 KIF13AQ9H1H9 1805 aa18.6■□□□□ 0.57
R3HDM2-210ENST00000547019 CHMP7Q8WUX9 453 aaPredicted RBP18.59■□□□□ 0.57
R3HDM2-210ENST00000547019 GRIN2BQ13224 1484 aa18.58■□□□□ 0.57
R3HDM2-210ENST00000547019 CUX1P39880 1505 aa18.57■□□□□ 0.56
R3HDM2-210ENST00000547019 ABCA5Q8WWZ7 1642 aa18.49■□□□□ 0.55
R3HDM2-210ENST00000547019 CEP170Q5SW79 1584 aa18.47■□□□□ 0.55
R3HDM2-210ENST00000547019 SHROOM2Q13796 1616 aa18.43■□□□□ 0.54
R3HDM2-210ENST00000547019 GRIN2AQ12879 1464 aa18.39■□□□□ 0.54
R3HDM2-210ENST00000547019 ADAMTS12P58397 1594 aa18.38■□□□□ 0.53
R3HDM2-210ENST00000547019 NUP160Q12769 1436 aa18.37■□□□□ 0.53
R3HDM2-210ENST00000547019 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
R3HDM2-210ENST00000547019 ILDR1Q86SU0 546 aaPredicted RBP18.35■□□□□ 0.53
R3HDM2-210ENST00000547019 KDM4FA0A1W2PPD8 638 aa18.29■□□□□ 0.52
R3HDM2-210ENST00000547019 DIP2BQ9P265 1576 aa18.28■□□□□ 0.52
R3HDM2-210ENST00000547019 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
R3HDM2-210ENST00000547019 KDM6BO15054 1643 aa18.23■□□□□ 0.51
R3HDM2-210ENST00000547019 TSPOAP1O95153 1857 aa18.22■□□□□ 0.51
R3HDM2-210ENST00000547019 MAPKBP1O60336 1514 aa18.21■□□□□ 0.51
R3HDM2-210ENST00000547019 ADCY10Q96PN6 1610 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 193.4 ms