RNA–Protein interactions for RNA: ENST00000546961.1

SCN8A-204, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 1 (best)

Gene SCN8A, Length 465 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-204ENST00000546961 NISCHQ9Y2I1 1504 aa50.12■■■■■ 5.61
SCN8A-204ENST00000546961 ABCC9O60706 1549 aa45.16■■■■■ 4.82
SCN8A-204ENST00000546961 CCDC180Q9P1Z9 1646 aa44.83■■■■■ 4.77
SCN8A-204ENST00000546961 RB1CC1Q8TDY2 1594 aa42.82■■■■■ 4.45
SCN8A-204ENST00000546961 DCAF8L2P0C7V8 631 aa42.68■■■■■ 4.42
SCN8A-204ENST00000546961 DNAJC5BQ9UF47 199 aa42.54■■■■■ 4.4
SCN8A-204ENST00000546961 NACADO15069 1562 aa42.52■■■■■ 4.4
SCN8A-204ENST00000546961 PABPN1Q86U42 306 aaKnown RBP eCLIP42.18■■■■■ 4.34
SCN8A-204ENST00000546961 MYO15BQ96JP2 1530 aa41.87■■■■■ 4.29
SCN8A-204ENST00000546961 UNC13AQ9UPW8 1703 aa41.73■■■■■ 4.27
SCN8A-204ENST00000546961 BICRAQ9NZM4 1560 aa41.57■■■■■ 4.25
SCN8A-204ENST00000546961 ZCCHC6Q5VYS8 1495 aaKnown RBP41.47■■■■■ 4.23
SCN8A-204ENST00000546961 DCAF1Q9Y4B6 1507 aa41.32■■■■■ 4.2
SCN8A-204ENST00000546961 SCRIBQ14160 1630 aa40.99■■■■■ 4.15
SCN8A-204ENST00000546961 SHROOM4Q9ULL8 1493 aa40.93■■■■■ 4.14
SCN8A-204ENST00000546961 CC2D2AQ9P2K1 1620 aa40.68■■■■■ 4.1
SCN8A-204ENST00000546961 CECR2Q9BXF3 1484 aa40.66■■■■■ 4.1
SCN8A-204ENST00000546961 EIF4G1Q04637 1599 aaKnown RBP40.57■■■■■ 4.08
SCN8A-204ENST00000546961 NCAPD3P42695 1498 aa39.32■■■■□ 3.89
SCN8A-204ENST00000546961 ATAD2BQ9ULI0 1458 aa39.2■■■■□ 3.87
SCN8A-204ENST00000546961 DNAJC5Q9H3Z4 198 aa39.1■■■■□ 3.85
SCN8A-204ENST00000546961 SMARCA4P51532 1647 aa39.05■■■■□ 3.84
SCN8A-204ENST00000546961 SMARCA2P51531 1590 aa39.03■■■■□ 3.84
SCN8A-204ENST00000546961 ERCC6Q03468 1493 aa38.98■■■■□ 3.83
SCN8A-204ENST00000546961 HMGXB3Q12766 1538 aa38.91■■■■□ 3.82
SCN8A-204ENST00000546961 BAZ1AQ9NRL2 1556 aaPredicted RBP38.87■■■■□ 3.81
SCN8A-204ENST00000546961 CUX2O14529 1486 aa38.85■■■■□ 3.81
SCN8A-204ENST00000546961 BAZ1BQ9UIG0 1483 aaKnown RBP38.8■■■■□ 3.8
SCN8A-204ENST00000546961 NESP48681 1621 aa38.75■■■■□ 3.79
SCN8A-204ENST00000546961 MROH2BQ7Z745 1585 aa38.65■■■■□ 3.78
SCN8A-204ENST00000546961 PEG3Q9GZU2 1588 aa38.63■■■■□ 3.77
SCN8A-204ENST00000546961 LAMC3Q9Y6N6 1575 aa38.36■■■■□ 3.73
SCN8A-204ENST00000546961 PDS5BQ9NTI5 1447 aa38.27■■■■□ 3.72
SCN8A-204ENST00000546961 THOC2Q8NI27 1593 aaKnown RBP38.2■■■■□ 3.71
SCN8A-204ENST00000546961 CADPSQ9ULU8 1353 aa38.19■■■■□ 3.7
SCN8A-204ENST00000546961 WIZO95785 1651 aa38.14■■■■□ 3.7
SCN8A-204ENST00000546961 KIF21AQ7Z4S6 1674 aa38.1■■■■□ 3.69
SCN8A-204ENST00000546961 MRC2Q9UBG0 1479 aa37.88■■■■□ 3.65
SCN8A-204ENST00000546961 RSF1Q96T23 1441 aaPredicted RBP37.87■■■■□ 3.65
SCN8A-204ENST00000546961 WDR62O43379 1518 aa37.72■■■■□ 3.63
SCN8A-204ENST00000546961 CEP164Q9UPV0 1460 aa37.71■■■■□ 3.63
SCN8A-204ENST00000546961 FANCD2Q9BXW9 1451 aa37.71■■■■□ 3.63
SCN8A-204ENST00000546961 CFTRP13569 1480 aa37.67■■■■□ 3.62
SCN8A-204ENST00000546961 TOP2AP11388 1531 aaKnown RBP37.62■■■■□ 3.61
SCN8A-204ENST00000546961 TRIM41Q8WV44 630 aa37.42■■■■□ 3.58
SCN8A-204ENST00000546961 URB2Q14146 1524 aaKnown RBP37.38■■■■□ 3.57
SCN8A-204ENST00000546961 CCDC88BA6NC98 1476 aa37.32■■■■□ 3.56
SCN8A-204ENST00000546961 OSCARQ8IYS5 282 aa37.28■■■■□ 3.56
SCN8A-204ENST00000546961 PRDM2Q13029 1718 aa37.05■■■■□ 3.52
SCN8A-204ENST00000546961 IFT140Q96RY7 1462 aa36.99■■■■□ 3.51
SCN8A-204ENST00000546961 TOPBP1Q92547 1522 aa36.96■■■■□ 3.51
SCN8A-204ENST00000546961 ZNF608Q9ULD9 1512 aaPredicted RBP36.96■■■■□ 3.51
SCN8A-204ENST00000546961 ABCC8Q09428 1581 aa36.88■■■■□ 3.49
SCN8A-204ENST00000546961 DNMBPQ6XZF7 1577 aa36.76■■■■□ 3.48
SCN8A-204ENST00000546961 AQRO60306 1485 aaKnown RBP eCLIP36.68■■■■□ 3.46
SCN8A-204ENST00000546961 EIF4G3O43432 1585 aaKnown RBP36.61■■■■□ 3.45
SCN8A-204ENST00000546961 FBLN2P98095 1184 aa36.59■■■■□ 3.45
SCN8A-204ENST00000546961 POLA1P09884 1462 aaPredicted RBP36.57■■■■□ 3.45
SCN8A-204ENST00000546961 RIMBP3CA6NJZ7 1639 aa36.57■■■■□ 3.44
SCN8A-204ENST00000546961 RIMBP3BA6NNM3 1639 aa36.57■■■■□ 3.44
SCN8A-204ENST00000546961 RIMBP3Q9UFD9 1639 aa36.57■■■■□ 3.44
SCN8A-204ENST00000546961 TARBP1Q13395 1621 aaKnown RBP36.56■■■■□ 3.44
SCN8A-204ENST00000546961 RAD54L2Q9Y4B4 1467 aa36.52■■■■□ 3.44
SCN8A-204ENST00000546961 SOGA1O94964 1423 aa36.51■■■■□ 3.44
SCN8A-204ENST00000546961 TDRD9Q8NDG6 1382 aaKnown RBP36.49■■■■□ 3.43
SCN8A-204ENST00000546961 ARHGEF11O15085 1522 aa36.49■■■■□ 3.43
SCN8A-204ENST00000546961 CYB5RLQ6IPT4 315 aa36.45■■■■□ 3.43
SCN8A-204ENST00000546961 SUPT5HO00267 1087 aaKnown RBP36.37■■■■□ 3.41
SCN8A-204ENST00000546961 CHD1O14646 1710 aa36.35■■■■□ 3.41
SCN8A-204ENST00000546961 FGD5Q6ZNL6 1462 aa36.35■■■■□ 3.41
SCN8A-204ENST00000546961 CUX1P39880 1505 aa36.29■■■■□ 3.4
SCN8A-204ENST00000546961 CHMP7Q8WUX9 453 aaPredicted RBP36.27■■■■□ 3.4
SCN8A-204ENST00000546961 SNAPC4Q5SXM2 1469 aa36.22■■■■□ 3.39
SCN8A-204ENST00000546961 GRIN2BQ13224 1484 aa36.13■■■■□ 3.37
SCN8A-204ENST00000546961 ARAP1Q96P48 1450 aa36.13■■■■□ 3.37
SCN8A-204ENST00000546961 WDR97A6NE52 1622 aa36.12■■■■□ 3.37
SCN8A-204ENST00000546961 TRHP20396 242 aaPredicted RBP36.09■■■■□ 3.37
SCN8A-204ENST00000546961 MAGI1Q96QZ7 1491 aaPredicted RBP36.09■■■■□ 3.37
SCN8A-204ENST00000546961 GAPVD1Q14C86 1478 aa36.01■■■■□ 3.36
SCN8A-204ENST00000546961 SYNJ2O15056 1496 aa35.99■■■■□ 3.35
SCN8A-204ENST00000546961 SYNJ1O43426 1573 aa35.97■■■■□ 3.35
SCN8A-204ENST00000546961 CLASP1Q7Z460 1538 aa35.96■■■■□ 3.35
SCN8A-204ENST00000546961 ABCA10Q8WWZ4 1543 aa35.91■■■■□ 3.34
SCN8A-204ENST00000546961 WRNQ14191 1432 aaPredicted RBP eCLIP35.83■■■■□ 3.33
SCN8A-204ENST00000546961 PBRM1Q86U86 1689 aa35.81■■■■□ 3.32
SCN8A-204ENST00000546961 ABCA5Q8WWZ7 1642 aa35.77■■■■□ 3.32
SCN8A-204ENST00000546961 TOP2BQ02880 1626 aa35.64■■■■□ 3.3
SCN8A-204ENST00000546961 GRIN2AQ12879 1464 aa35.63■■■■□ 3.29
SCN8A-204ENST00000546961 BIVM-ERCC5R4GMW8 1640 aa35.59■■■■□ 3.29
SCN8A-204ENST00000546961 FHAD1B1AJZ9 1412 aa35.56■■■■□ 3.28
SCN8A-204ENST00000546961 ADAMTS12P58397 1594 aa35.51■■■■□ 3.28
SCN8A-204ENST00000546961 NUP160Q12769 1436 aa35.51■■■■□ 3.28
SCN8A-204ENST00000546961 CEP170Q5SW79 1584 aa35.47■■■■□ 3.27
SCN8A-204ENST00000546961 ERCC6L2Q5T890 1561 aa35.47■■■■□ 3.27
SCN8A-204ENST00000546961 ERICH3Q5RHP9 1530 aa35.43■■■■□ 3.26
SCN8A-204ENST00000546961 JPH4Q96JJ6 628 aa35.34■■■■□ 3.25
SCN8A-204ENST00000546961 PRG4Q92954 1404 aaPredicted RBP35.27■■■■□ 3.24
SCN8A-204ENST00000546961 SHROOM2Q13796 1616 aa35.27■■■■□ 3.24
SCN8A-204ENST00000546961 IGF1RP08069 1367 aa35.13■■■■□ 3.21
SCN8A-204ENST00000546961 AEBP2Q6ZN18 517 aaPredicted RBP35.08■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms