RNA–Protein interactions for RNA: ENST00000546843.2

R3HDM2-209, Transcript of R3H domain containing 2, humanhuman

TSL 5

Gene R3HDM2, Length 823 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM2-209ENST00000546843 NISCHQ9Y2I1 1504 aa40.83■■■■■ 4.13
R3HDM2-209ENST00000546843 CCDC180Q9P1Z9 1646 aa36.28■■■■□ 3.4
R3HDM2-209ENST00000546843 ABCC9O60706 1549 aa35.72■■■■□ 3.31
R3HDM2-209ENST00000546843 DCAF8L2P0C7V8 631 aa34.22■■■■□ 3.07
R3HDM2-209ENST00000546843 RB1CC1Q8TDY2 1594 aa34.22■■■■□ 3.07
R3HDM2-209ENST00000546843 NACADO15069 1562 aa34.14■■■■□ 3.06
R3HDM2-209ENST00000546843 ZCCHC6Q5VYS8 1495 aaKnown RBP34.02■■■■□ 3.04
R3HDM2-209ENST00000546843 MYO15BQ96JP2 1530 aa33.85■■■■□ 3.01
R3HDM2-209ENST00000546843 DCAF1Q9Y4B6 1507 aa33.71■■■□□ 2.99
R3HDM2-209ENST00000546843 UNC13AQ9UPW8 1703 aa33.43■■■□□ 2.94
R3HDM2-209ENST00000546843 PABPN1Q86U42 306 aaKnown RBP eCLIP33.37■■■□□ 2.93
R3HDM2-209ENST00000546843 SCRIBQ14160 1630 aa33.23■■■□□ 2.91
R3HDM2-209ENST00000546843 BICRAQ9NZM4 1560 aa33.22■■■□□ 2.91
R3HDM2-209ENST00000546843 DNAJC5BQ9UF47 199 aa32.83■■■□□ 2.85
R3HDM2-209ENST00000546843 SHROOM4Q9ULL8 1493 aa32.77■■■□□ 2.84
R3HDM2-209ENST00000546843 EIF4G1Q04637 1599 aaKnown RBP32.35■■■□□ 2.77
R3HDM2-209ENST00000546843 CC2D2AQ9P2K1 1620 aa32.24■■■□□ 2.75
R3HDM2-209ENST00000546843 CECR2Q9BXF3 1484 aa32.05■■■□□ 2.72
R3HDM2-209ENST00000546843 SMARCA4P51532 1647 aa31.71■■■□□ 2.67
R3HDM2-209ENST00000546843 BAZ1AQ9NRL2 1556 aaPredicted RBP31.64■■■□□ 2.65
R3HDM2-209ENST00000546843 ATAD2BQ9ULI0 1458 aa31.57■■■□□ 2.64
R3HDM2-209ENST00000546843 MROH2BQ7Z745 1585 aa31.51■■■□□ 2.64
R3HDM2-209ENST00000546843 NCAPD3P42695 1498 aa31.51■■■□□ 2.63
R3HDM2-209ENST00000546843 SMARCA2P51531 1590 aa31.48■■■□□ 2.63
R3HDM2-209ENST00000546843 HMGXB3Q12766 1538 aa31.36■■■□□ 2.61
R3HDM2-209ENST00000546843 PEG3Q9GZU2 1588 aa31.34■■■□□ 2.61
R3HDM2-209ENST00000546843 BAZ1BQ9UIG0 1483 aaKnown RBP31.31■■■□□ 2.6
R3HDM2-209ENST00000546843 WIZO95785 1651 aa31.16■■■□□ 2.58
R3HDM2-209ENST00000546843 RSF1Q96T23 1441 aaPredicted RBP31.11■■■□□ 2.57
R3HDM2-209ENST00000546843 NESP48681 1621 aa30.89■■■□□ 2.54
R3HDM2-209ENST00000546843 TOP2AP11388 1531 aaKnown RBP30.81■■■□□ 2.52
R3HDM2-209ENST00000546843 ERCC6Q03468 1493 aa30.76■■■□□ 2.52
R3HDM2-209ENST00000546843 LAMC3Q9Y6N6 1575 aa30.69■■■□□ 2.5
R3HDM2-209ENST00000546843 CADPSQ9ULU8 1353 aa30.61■■■□□ 2.49
R3HDM2-209ENST00000546843 PDS5BQ9NTI5 1447 aa30.49■■■□□ 2.47
R3HDM2-209ENST00000546843 KIF21AQ7Z4S6 1674 aa30.46■■■□□ 2.47
R3HDM2-209ENST00000546843 CCDC88BA6NC98 1476 aa30.45■■■□□ 2.47
R3HDM2-209ENST00000546843 CFTRP13569 1480 aa30.41■■■□□ 2.46
R3HDM2-209ENST00000546843 CUX2O14529 1486 aa30.39■■■□□ 2.46
R3HDM2-209ENST00000546843 THOC2Q8NI27 1593 aaKnown RBP30.39■■■□□ 2.46
R3HDM2-209ENST00000546843 SUPT5HO00267 1087 aaKnown RBP30.32■■■□□ 2.44
R3HDM2-209ENST00000546843 FANCD2Q9BXW9 1451 aa30.3■■■□□ 2.44
R3HDM2-209ENST00000546843 CEP164Q9UPV0 1460 aa30.26■■■□□ 2.44
R3HDM2-209ENST00000546843 MRC2Q9UBG0 1479 aa30.24■■■□□ 2.43
R3HDM2-209ENST00000546843 WDR62O43379 1518 aa30.12■■■□□ 2.41
R3HDM2-209ENST00000546843 PRDM2Q13029 1718 aa30.11■■■□□ 2.41
R3HDM2-209ENST00000546843 URB2Q14146 1524 aaKnown RBP30.01■■■□□ 2.4
R3HDM2-209ENST00000546843 TOPBP1Q92547 1522 aa29.81■■■□□ 2.36
R3HDM2-209ENST00000546843 DNMBPQ6XZF7 1577 aa29.74■■■□□ 2.35
R3HDM2-209ENST00000546843 ABCC8Q09428 1581 aa29.7■■■□□ 2.35
R3HDM2-209ENST00000546843 IFT140Q96RY7 1462 aa29.61■■■□□ 2.33
R3HDM2-209ENST00000546843 CUX1P39880 1505 aa29.57■■■□□ 2.32
R3HDM2-209ENST00000546843 POLA1P09884 1462 aaPredicted RBP29.55■■■□□ 2.32
R3HDM2-209ENST00000546843 DNAJC5Q9H3Z4 198 aa29.55■■■□□ 2.32
R3HDM2-209ENST00000546843 ZNF608Q9ULD9 1512 aaPredicted RBP29.55■■■□□ 2.32
R3HDM2-209ENST00000546843 FGD5Q6ZNL6 1462 aa29.48■■■□□ 2.31
R3HDM2-209ENST00000546843 TARBP1Q13395 1621 aaKnown RBP29.46■■■□□ 2.31
R3HDM2-209ENST00000546843 RAD54L2Q9Y4B4 1467 aa29.46■■■□□ 2.31
R3HDM2-209ENST00000546843 SOGA1O94964 1423 aa29.41■■■□□ 2.3
R3HDM2-209ENST00000546843 EIF4G3O43432 1585 aaKnown RBP29.4■■■□□ 2.3
R3HDM2-209ENST00000546843 AQRO60306 1485 aaKnown RBP eCLIP29.36■■■□□ 2.29
R3HDM2-209ENST00000546843 WRNQ14191 1432 aaPredicted RBP eCLIP29.33■■■□□ 2.29
R3HDM2-209ENST00000546843 TDRD9Q8NDG6 1382 aaKnown RBP29.29■■■□□ 2.28
R3HDM2-209ENST00000546843 SYNJ1O43426 1573 aa29.29■■■□□ 2.28
R3HDM2-209ENST00000546843 TOP2BQ02880 1626 aa29.24■■■□□ 2.27
R3HDM2-209ENST00000546843 BIVM-ERCC5R4GMW8 1640 aa29.23■■■□□ 2.27
R3HDM2-209ENST00000546843 WDR97A6NE52 1622 aa29.2■■■□□ 2.27
R3HDM2-209ENST00000546843 ABCA10Q8WWZ4 1543 aa29.15■■■□□ 2.26
R3HDM2-209ENST00000546843 OSCARQ8IYS5 282 aa29.12■■■□□ 2.25
R3HDM2-209ENST00000546843 SNAPC4Q5SXM2 1469 aa29.1■■■□□ 2.25
R3HDM2-209ENST00000546843 GRIN2BQ13224 1484 aa29.07■■■□□ 2.24
R3HDM2-209ENST00000546843 GAPVD1Q14C86 1478 aa29.07■■■□□ 2.24
R3HDM2-209ENST00000546843 ABCA5Q8WWZ7 1642 aa29.05■■■□□ 2.24
R3HDM2-209ENST00000546843 FBLN2P98095 1184 aa29.03■■■□□ 2.24
R3HDM2-209ENST00000546843 CHD1O14646 1710 aa29.02■■■□□ 2.24
R3HDM2-209ENST00000546843 PBRM1Q86U86 1689 aa29.01■■■□□ 2.23
R3HDM2-209ENST00000546843 MAGI1Q96QZ7 1491 aaPredicted RBP28.98■■■□□ 2.23
R3HDM2-209ENST00000546843 CHMP7Q8WUX9 453 aaPredicted RBP28.89■■■□□ 2.22
R3HDM2-209ENST00000546843 SYNJ2O15056 1496 aa28.88■■■□□ 2.21
R3HDM2-209ENST00000546843 ADAMTS12P58397 1594 aa28.81■■■□□ 2.2
R3HDM2-209ENST00000546843 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
R3HDM2-209ENST00000546843 FHAD1B1AJZ9 1412 aa28.72■■■□□ 2.19
R3HDM2-209ENST00000546843 RIMBP3CA6NJZ7 1639 aa28.72■■■□□ 2.19
R3HDM2-209ENST00000546843 RIMBP3BA6NNM3 1639 aa28.72■■■□□ 2.19
R3HDM2-209ENST00000546843 RIMBP3Q9UFD9 1639 aa28.72■■■□□ 2.19
R3HDM2-209ENST00000546843 GRIN2AQ12879 1464 aa28.72■■■□□ 2.19
R3HDM2-209ENST00000546843 ARHGEF11O15085 1522 aa28.71■■■□□ 2.19
R3HDM2-209ENST00000546843 CLASP1Q7Z460 1538 aa28.71■■■□□ 2.19
R3HDM2-209ENST00000546843 KIF27Q86VH2 1401 aa28.7■■■□□ 2.19
R3HDM2-209ENST00000546843 TRIM41Q8WV44 630 aa28.68■■■□□ 2.18
R3HDM2-209ENST00000546843 IGF1RP08069 1367 aa28.6■■■□□ 2.17
R3HDM2-209ENST00000546843 CEP170Q5SW79 1584 aa28.59■■■□□ 2.17
R3HDM2-209ENST00000546843 NUP160Q12769 1436 aa28.58■■■□□ 2.17
R3HDM2-209ENST00000546843 ARAP1Q96P48 1450 aa28.5■■■□□ 2.15
R3HDM2-209ENST00000546843 CUL7Q14999 1698 aa28.5■■■□□ 2.15
R3HDM2-209ENST00000546843 RUSC2Q8N2Y8 1516 aa28.49■■■□□ 2.15
R3HDM2-209ENST00000546843 CYB5RLQ6IPT4 315 aa28.45■■■□□ 2.14
R3HDM2-209ENST00000546843 CARMIL1Q5VZK9 1371 aa28.44■■■□□ 2.14
R3HDM2-209ENST00000546843 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
R3HDM2-209ENST00000546843 SHROOM2Q13796 1616 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms