RNA–Protein interactions for RNA: ENST00000546626.1

PRPF40B-205, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 630 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-205ENST00000546626 NISCHQ9Y2I1 1504 aa33.87■■■■□ 3.01
PRPF40B-205ENST00000546626 CCDC180Q9P1Z9 1646 aa30.22■■■□□ 2.43
PRPF40B-205ENST00000546626 ABCC9O60706 1549 aa30.07■■■□□ 2.4
PRPF40B-205ENST00000546626 RB1CC1Q8TDY2 1594 aa28.74■■■□□ 2.19
PRPF40B-205ENST00000546626 NACADO15069 1562 aa28.62■■■□□ 2.17
PRPF40B-205ENST00000546626 DCAF8L2P0C7V8 631 aa28.58■■■□□ 2.17
PRPF40B-205ENST00000546626 MYO15BQ96JP2 1530 aa28.33■■■□□ 2.13
PRPF40B-205ENST00000546626 ZCCHC6Q5VYS8 1495 aaKnown RBP28.1■■■□□ 2.09
PRPF40B-205ENST00000546626 PABPN1Q86U42 306 aaKnown RBP eCLIP28.08■■■□□ 2.09
PRPF40B-205ENST00000546626 DNAJC5BQ9UF47 199 aa28.04■■■□□ 2.08
PRPF40B-205ENST00000546626 DCAF1Q9Y4B6 1507 aa28.02■■■□□ 2.08
PRPF40B-205ENST00000546626 UNC13AQ9UPW8 1703 aa27.88■■■□□ 2.05
PRPF40B-205ENST00000546626 BICRAQ9NZM4 1560 aa27.81■■■□□ 2.04
PRPF40B-205ENST00000546626 SHROOM4Q9ULL8 1493 aa27.61■■■□□ 2.01
PRPF40B-205ENST00000546626 SCRIBQ14160 1630 aa27.54■■■□□ 2
PRPF40B-205ENST00000546626 EIF4G1Q04637 1599 aaKnown RBP27.15■■□□□ 1.94
PRPF40B-205ENST00000546626 CC2D2AQ9P2K1 1620 aa27.13■■□□□ 1.93
PRPF40B-205ENST00000546626 CECR2Q9BXF3 1484 aa27.11■■□□□ 1.93
PRPF40B-205ENST00000546626 NCAPD3P42695 1498 aa26.45■■□□□ 1.82
PRPF40B-205ENST00000546626 ATAD2BQ9ULI0 1458 aa26.36■■□□□ 1.81
PRPF40B-205ENST00000546626 SMARCA4P51532 1647 aa26.32■■□□□ 1.8
PRPF40B-205ENST00000546626 SMARCA2P51531 1590 aa26.31■■□□□ 1.8
PRPF40B-205ENST00000546626 BAZ1AQ9NRL2 1556 aaPredicted RBP26.29■■□□□ 1.8
PRPF40B-205ENST00000546626 HMGXB3Q12766 1538 aa26.21■■□□□ 1.79
PRPF40B-205ENST00000546626 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
PRPF40B-205ENST00000546626 PEG3Q9GZU2 1588 aa26.1■■□□□ 1.77
PRPF40B-205ENST00000546626 MROH2BQ7Z745 1585 aa26.06■■□□□ 1.76
PRPF40B-205ENST00000546626 ERCC6Q03468 1493 aa26■■□□□ 1.75
PRPF40B-205ENST00000546626 CUX2O14529 1486 aa25.89■■□□□ 1.73
PRPF40B-205ENST00000546626 NESP48681 1621 aa25.85■■□□□ 1.73
PRPF40B-205ENST00000546626 LAMC3Q9Y6N6 1575 aa25.77■■□□□ 1.72
PRPF40B-205ENST00000546626 WIZO95785 1651 aa25.7■■□□□ 1.7
PRPF40B-205ENST00000546626 PDS5BQ9NTI5 1447 aa25.7■■□□□ 1.7
PRPF40B-205ENST00000546626 DNAJC5Q9H3Z4 198 aa25.68■■□□□ 1.7
PRPF40B-205ENST00000546626 CADPSQ9ULU8 1353 aa25.68■■□□□ 1.7
PRPF40B-205ENST00000546626 RSF1Q96T23 1441 aaPredicted RBP25.66■■□□□ 1.7
PRPF40B-205ENST00000546626 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
PRPF40B-205ENST00000546626 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
PRPF40B-205ENST00000546626 KIF21AQ7Z4S6 1674 aa25.45■■□□□ 1.66
PRPF40B-205ENST00000546626 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
PRPF40B-205ENST00000546626 CFTRP13569 1480 aa25.39■■□□□ 1.65
PRPF40B-205ENST00000546626 CEP164Q9UPV0 1460 aa25.34■■□□□ 1.65
PRPF40B-205ENST00000546626 FANCD2Q9BXW9 1451 aa25.33■■□□□ 1.65
PRPF40B-205ENST00000546626 WDR62O43379 1518 aa25.28■■□□□ 1.64
PRPF40B-205ENST00000546626 CCDC88BA6NC98 1476 aa25.2■■□□□ 1.62
PRPF40B-205ENST00000546626 URB2Q14146 1524 aaKnown RBP25.07■■□□□ 1.6
PRPF40B-205ENST00000546626 PRDM2Q13029 1718 aa24.97■■□□□ 1.59
PRPF40B-205ENST00000546626 ABCC8Q09428 1581 aa24.91■■□□□ 1.58
PRPF40B-205ENST00000546626 IFT140Q96RY7 1462 aa24.86■■□□□ 1.57
PRPF40B-205ENST00000546626 TOPBP1Q92547 1522 aa24.85■■□□□ 1.57
PRPF40B-205ENST00000546626 OSCARQ8IYS5 282 aa24.83■■□□□ 1.57
PRPF40B-205ENST00000546626 DNMBPQ6XZF7 1577 aa24.76■■□□□ 1.55
PRPF40B-205ENST00000546626 SUPT5HO00267 1087 aaKnown RBP24.72■■□□□ 1.55
PRPF40B-205ENST00000546626 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
PRPF40B-205ENST00000546626 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
PRPF40B-205ENST00000546626 POLA1P09884 1462 aaPredicted RBP24.61■■□□□ 1.53
PRPF40B-205ENST00000546626 SOGA1O94964 1423 aa24.57■■□□□ 1.52
PRPF40B-205ENST00000546626 AQRO60306 1485 aaKnown RBP eCLIP24.57■■□□□ 1.52
PRPF40B-205ENST00000546626 TARBP1Q13395 1621 aaKnown RBP24.56■■□□□ 1.52
PRPF40B-205ENST00000546626 EIF4G3O43432 1585 aaKnown RBP24.54■■□□□ 1.52
PRPF40B-205ENST00000546626 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
PRPF40B-205ENST00000546626 FGD5Q6ZNL6 1462 aa24.48■■□□□ 1.51
PRPF40B-205ENST00000546626 CUX1P39880 1505 aa24.47■■□□□ 1.51
PRPF40B-205ENST00000546626 TDRD9Q8NDG6 1382 aaKnown RBP24.46■■□□□ 1.51
PRPF40B-205ENST00000546626 FBLN2P98095 1184 aa24.42■■□□□ 1.5
PRPF40B-205ENST00000546626 WDR97A6NE52 1622 aa24.41■■□□□ 1.5
PRPF40B-205ENST00000546626 CHMP7Q8WUX9 453 aaPredicted RBP24.32■■□□□ 1.48
PRPF40B-205ENST00000546626 GRIN2BQ13224 1484 aa24.32■■□□□ 1.48
PRPF40B-205ENST00000546626 SNAPC4Q5SXM2 1469 aa24.31■■□□□ 1.48
PRPF40B-205ENST00000546626 RIMBP3CA6NJZ7 1639 aa24.29■■□□□ 1.48
PRPF40B-205ENST00000546626 RIMBP3BA6NNM3 1639 aa24.29■■□□□ 1.48
PRPF40B-205ENST00000546626 RIMBP3Q9UFD9 1639 aa24.29■■□□□ 1.48
PRPF40B-205ENST00000546626 MAGI1Q96QZ7 1491 aaPredicted RBP24.29■■□□□ 1.48
PRPF40B-205ENST00000546626 ARHGEF11O15085 1522 aa24.29■■□□□ 1.48
PRPF40B-205ENST00000546626 CHD1O14646 1710 aa24.26■■□□□ 1.47
PRPF40B-205ENST00000546626 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
PRPF40B-205ENST00000546626 WRNQ14191 1432 aaPredicted RBP eCLIP24.25■■□□□ 1.47
PRPF40B-205ENST00000546626 GAPVD1Q14C86 1478 aa24.25■■□□□ 1.47
PRPF40B-205ENST00000546626 SYNJ2O15056 1496 aa24.19■■□□□ 1.46
PRPF40B-205ENST00000546626 CYB5RLQ6IPT4 315 aa24.19■■□□□ 1.46
PRPF40B-205ENST00000546626 TOP2BQ02880 1626 aa24.14■■□□□ 1.46
PRPF40B-205ENST00000546626 SYNJ1O43426 1573 aa24.14■■□□□ 1.45
PRPF40B-205ENST00000546626 ABCA5Q8WWZ7 1642 aa24.11■■□□□ 1.45
PRPF40B-205ENST00000546626 BIVM-ERCC5R4GMW8 1640 aa24.1■■□□□ 1.45
PRPF40B-205ENST00000546626 CLASP1Q7Z460 1538 aa24.09■■□□□ 1.45
PRPF40B-205ENST00000546626 PBRM1Q86U86 1689 aa24.07■■□□□ 1.44
PRPF40B-205ENST00000546626 ARAP1Q96P48 1450 aa24.07■■□□□ 1.44
PRPF40B-205ENST00000546626 FHAD1B1AJZ9 1412 aa23.98■■□□□ 1.43
PRPF40B-205ENST00000546626 GRIN2AQ12879 1464 aa23.97■■□□□ 1.43
PRPF40B-205ENST00000546626 ERICH3Q5RHP9 1530 aa23.95■■□□□ 1.43
PRPF40B-205ENST00000546626 ADAMTS12P58397 1594 aa23.92■■□□□ 1.42
PRPF40B-205ENST00000546626 NUP160Q12769 1436 aa23.9■■□□□ 1.42
PRPF40B-205ENST00000546626 TRHP20396 242 aaPredicted RBP23.87■■□□□ 1.41
PRPF40B-205ENST00000546626 CEP170Q5SW79 1584 aa23.81■■□□□ 1.4
PRPF40B-205ENST00000546626 KIF27Q86VH2 1401 aa23.78■■□□□ 1.4
PRPF40B-205ENST00000546626 JPH4Q96JJ6 628 aa23.74■■□□□ 1.39
PRPF40B-205ENST00000546626 IGF1RP08069 1367 aa23.74■■□□□ 1.39
PRPF40B-205ENST00000546626 SHROOM2Q13796 1616 aa23.68■■□□□ 1.38
PRPF40B-205ENST00000546626 ERCC6L2Q5T890 1561 aa23.68■■□□□ 1.38
PRPF40B-205ENST00000546626 PRG4Q92954 1404 aaPredicted RBP23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms