RNA–Protein interactions for RNA: ENST00000546309.6

KDM1B-203, Transcript of lysine demethylase 1B, humanhuman

TSL 1 (best) BASIC

Gene KDM1B, Length 496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1B-203ENST00000546309 NISCHQ9Y2I1 1504 aa18.84■□□□□ 0.61
KDM1B-203ENST00000546309 ABCC9O60706 1549 aa16.87■□□□□ 0.29
KDM1B-203ENST00000546309 CCDC180Q9P1Z9 1646 aa16.81■□□□□ 0.28
KDM1B-203ENST00000546309 DNAJC5BQ9UF47 199 aa16.05■□□□□ 0.16
KDM1B-203ENST00000546309 RB1CC1Q8TDY2 1594 aa15.94■□□□□ 0.14
KDM1B-203ENST00000546309 NACADO15069 1562 aa15.87■□□□□ 0.13
KDM1B-203ENST00000546309 UNC13AQ9UPW8 1703 aa15.82■□□□□ 0.12
KDM1B-203ENST00000546309 BICRAQ9NZM4 1560 aa15.75■□□□□ 0.11
KDM1B-203ENST00000546309 PABPN1Q86U42 306 aaKnown RBP eCLIP15.74■□□□□ 0.11
KDM1B-203ENST00000546309 DCAF8L2P0C7V8 631 aa15.72■□□□□ 0.11
KDM1B-203ENST00000546309 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
KDM1B-203ENST00000546309 ZCCHC6Q5VYS8 1495 aaKnown RBP15.62■□□□□ 0.09
KDM1B-203ENST00000546309 DCAF1Q9Y4B6 1507 aa15.51■□□□□ 0.07
KDM1B-203ENST00000546309 SCRIBQ14160 1630 aa15.37■□□□□ 0.05
KDM1B-203ENST00000546309 CC2D2AQ9P2K1 1620 aa15.25■□□□□ 0.03
KDM1B-203ENST00000546309 SHROOM4Q9ULL8 1493 aa15.22■□□□□ 0.03
KDM1B-203ENST00000546309 EIF4G1Q04637 1599 aaKnown RBP15.21■□□□□ 0.03
KDM1B-203ENST00000546309 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
KDM1B-203ENST00000546309 NCAPD3P42695 1498 aa14.73□□□□□ -0.05
KDM1B-203ENST00000546309 ATAD2BQ9ULI0 1458 aa14.7□□□□□ -0.06
KDM1B-203ENST00000546309 SMARCA4P51532 1647 aa14.68□□□□□ -0.06
KDM1B-203ENST00000546309 NESP48681 1621 aa14.6□□□□□ -0.07
KDM1B-203ENST00000546309 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
KDM1B-203ENST00000546309 HMGXB3Q12766 1538 aa14.56□□□□□ -0.08
KDM1B-203ENST00000546309 PEG3Q9GZU2 1588 aa14.56□□□□□ -0.08
KDM1B-203ENST00000546309 SMARCA2P51531 1590 aa14.53□□□□□ -0.08
KDM1B-203ENST00000546309 BAZ1AQ9NRL2 1556 aaPredicted RBP14.51□□□□□ -0.09
KDM1B-203ENST00000546309 DNAJC5Q9H3Z4 198 aa14.51□□□□□ -0.09
KDM1B-203ENST00000546309 BAZ1BQ9UIG0 1483 aaKnown RBP14.44□□□□□ -0.1
KDM1B-203ENST00000546309 CUX2O14529 1486 aa14.42□□□□□ -0.1
KDM1B-203ENST00000546309 WIZO95785 1651 aa14.4□□□□□ -0.1
KDM1B-203ENST00000546309 THOC2Q8NI27 1593 aaKnown RBP14.39□□□□□ -0.11
KDM1B-203ENST00000546309 ERCC6Q03468 1493 aa14.38□□□□□ -0.11
KDM1B-203ENST00000546309 KIF21AQ7Z4S6 1674 aa14.35□□□□□ -0.11
KDM1B-203ENST00000546309 LAMC3Q9Y6N6 1575 aa14.3□□□□□ -0.12
KDM1B-203ENST00000546309 RSF1Q96T23 1441 aaPredicted RBP14.26□□□□□ -0.13
KDM1B-203ENST00000546309 CADPSQ9ULU8 1353 aa14.24□□□□□ -0.13
KDM1B-203ENST00000546309 PDS5BQ9NTI5 1447 aa14.15□□□□□ -0.14
KDM1B-203ENST00000546309 WDR62O43379 1518 aa14.15□□□□□ -0.14
KDM1B-203ENST00000546309 CFTRP13569 1480 aa14.12□□□□□ -0.15
KDM1B-203ENST00000546309 TOP2AP11388 1531 aaKnown RBP14.12□□□□□ -0.15
KDM1B-203ENST00000546309 MRC2Q9UBG0 1479 aa14.12□□□□□ -0.15
KDM1B-203ENST00000546309 FANCD2Q9BXW9 1451 aa14.07□□□□□ -0.16
KDM1B-203ENST00000546309 URB2Q14146 1524 aaKnown RBP14.07□□□□□ -0.16
KDM1B-203ENST00000546309 CCDC88BA6NC98 1476 aa14.03□□□□□ -0.16
KDM1B-203ENST00000546309 CEP164Q9UPV0 1460 aa14.02□□□□□ -0.16
KDM1B-203ENST00000546309 PRDM2Q13029 1718 aa13.94□□□□□ -0.18
KDM1B-203ENST00000546309 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.18
KDM1B-203ENST00000546309 TRIM41Q8WV44 630 aa13.87□□□□□ -0.19
KDM1B-203ENST00000546309 TOPBP1Q92547 1522 aa13.85□□□□□ -0.19
KDM1B-203ENST00000546309 TARBP1Q13395 1621 aaKnown RBP13.79□□□□□ -0.2
KDM1B-203ENST00000546309 DNMBPQ6XZF7 1577 aa13.75□□□□□ -0.21
KDM1B-203ENST00000546309 IFT140Q96RY7 1462 aa13.75□□□□□ -0.21
KDM1B-203ENST00000546309 OSCARQ8IYS5 282 aa13.74□□□□□ -0.21
KDM1B-203ENST00000546309 EIF4G3O43432 1585 aaKnown RBP13.74□□□□□ -0.21
KDM1B-203ENST00000546309 AQRO60306 1485 aaKnown RBP eCLIP13.74□□□□□ -0.214e-6■■■■■ 28
KDM1B-203ENST00000546309 RAD54L2Q9Y4B4 1467 aa13.73□□□□□ -0.21
KDM1B-203ENST00000546309 POLA1P09884 1462 aaPredicted RBP13.72□□□□□ -0.21
KDM1B-203ENST00000546309 RIMBP3CA6NJZ7 1639 aa13.7□□□□□ -0.22
KDM1B-203ENST00000546309 RIMBP3BA6NNM3 1639 aa13.7□□□□□ -0.22
KDM1B-203ENST00000546309 RIMBP3Q9UFD9 1639 aa13.7□□□□□ -0.22
KDM1B-203ENST00000546309 CUX1P39880 1505 aa13.69□□□□□ -0.22
KDM1B-203ENST00000546309 CHD1O14646 1710 aa13.67□□□□□ -0.22
KDM1B-203ENST00000546309 ABCC8Q09428 1581 aa13.64□□□□□ -0.23
KDM1B-203ENST00000546309 ARHGEF11O15085 1522 aa13.64□□□□□ -0.23
KDM1B-203ENST00000546309 TDRD9Q8NDG6 1382 aaKnown RBP13.63□□□□□ -0.23
KDM1B-203ENST00000546309 FGD5Q6ZNL6 1462 aa13.62□□□□□ -0.23
KDM1B-203ENST00000546309 SOGA1O94964 1423 aa13.59□□□□□ -0.23
KDM1B-203ENST00000546309 WDR97A6NE52 1622 aa13.59□□□□□ -0.23
KDM1B-203ENST00000546309 ARAP1Q96P48 1450 aa13.55□□□□□ -0.24
KDM1B-203ENST00000546309 SUPT5HO00267 1087 aaKnown RBP13.55□□□□□ -0.24
KDM1B-203ENST00000546309 SNAPC4Q5SXM2 1469 aa13.54□□□□□ -0.24
KDM1B-203ENST00000546309 CLASP1Q7Z460 1538 aa13.53□□□□□ -0.24
KDM1B-203ENST00000546309 ABCA5Q8WWZ7 1642 aa13.47□□□□□ -0.25
KDM1B-203ENST00000546309 CYB5RLQ6IPT4 315 aa13.47□□□□□ -0.25
KDM1B-203ENST00000546309 SYNJ1O43426 1573 aa13.45□□□□□ -0.26
KDM1B-203ENST00000546309 ABCA10Q8WWZ4 1543 aa13.45□□□□□ -0.26
KDM1B-203ENST00000546309 PBRM1Q86U86 1689 aa13.45□□□□□ -0.26
KDM1B-203ENST00000546309 FBLN2P98095 1184 aa13.45□□□□□ -0.26
KDM1B-203ENST00000546309 GRIN2BQ13224 1484 aa13.44□□□□□ -0.26
KDM1B-203ENST00000546309 ERCC6L2Q5T890 1561 aa13.43□□□□□ -0.26
KDM1B-203ENST00000546309 GAPVD1Q14C86 1478 aa13.42□□□□□ -0.26
KDM1B-203ENST00000546309 MAGI1Q96QZ7 1491 aaPredicted RBP13.42□□□□□ -0.26
KDM1B-203ENST00000546309 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
KDM1B-203ENST00000546309 BIVM-ERCC5R4GMW8 1640 aa13.41□□□□□ -0.26
KDM1B-203ENST00000546309 TOP2BQ02880 1626 aa13.39□□□□□ -0.27
KDM1B-203ENST00000546309 CEP170Q5SW79 1584 aa13.36□□□□□ -0.27
KDM1B-203ENST00000546309 CHMP7Q8WUX9 453 aaPredicted RBP13.35□□□□□ -0.27
KDM1B-203ENST00000546309 ADAMTS12P58397 1594 aa13.34□□□□□ -0.27
KDM1B-203ENST00000546309 WRNQ14191 1432 aaPredicted RBP eCLIP13.34□□□□□ -0.27
KDM1B-203ENST00000546309 TRHP20396 242 aaPredicted RBP13.33□□□□□ -0.28
KDM1B-203ENST00000546309 NUP160Q12769 1436 aa13.32□□□□□ -0.28
KDM1B-203ENST00000546309 GRIN2AQ12879 1464 aa13.32□□□□□ -0.28
KDM1B-203ENST00000546309 SHROOM2Q13796 1616 aa13.29□□□□□ -0.28
KDM1B-203ENST00000546309 ERICH3Q5RHP9 1530 aa13.23□□□□□ -0.29
KDM1B-203ENST00000546309 FHAD1B1AJZ9 1412 aa13.23□□□□□ -0.29
KDM1B-203ENST00000546309 IGF1RP08069 1367 aa13.18□□□□□ -0.3
KDM1B-203ENST00000546309 RUSC2Q8N2Y8 1516 aa13.16□□□□□ -0.3
KDM1B-203ENST00000546309 KIF13AQ9H1H9 1805 aa13.13□□□□□ -0.31
KDM1B-203ENST00000546309 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms