RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 NISCHQ9Y2I1 1504 aa22.98■■□□□ 1.27
YBX3-218ENST00000546298 CCDC180Q9P1Z9 1646 aa20.45■□□□□ 0.87
YBX3-218ENST00000546298 ABCC9O60706 1549 aa20.42■□□□□ 0.86
YBX3-218ENST00000546298 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
YBX3-218ENST00000546298 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
YBX3-218ENST00000546298 NACADO15069 1562 aa19.4■□□□□ 0.7
YBX3-218ENST00000546298 MYO15BQ96JP2 1530 aa19.22■□□□□ 0.67
YBX3-218ENST00000546298 PABPN1Q86U42 306 aaKnown RBP eCLIP19.1■□□□□ 0.65
YBX3-218ENST00000546298 ZCCHC6Q5VYS8 1495 aaKnown RBP19.07■□□□□ 0.64
YBX3-218ENST00000546298 DNAJC5BQ9UF47 199 aa19.05■□□□□ 0.64
YBX3-218ENST00000546298 DCAF1Q9Y4B6 1507 aa19■□□□□ 0.63
YBX3-218ENST00000546298 BICRAQ9NZM4 1560 aa18.84■□□□□ 0.61
YBX3-218ENST00000546298 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
YBX3-218ENST00000546298 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
YBX3-218ENST00000546298 SCRIBQ14160 1630 aa18.67■□□□□ 0.58
YBX3-218ENST00000546298 EIF4G1Q04637 1599 aaKnown RBP18.41■□□□□ 0.54
YBX3-218ENST00000546298 CECR2Q9BXF3 1484 aa18.4■□□□□ 0.54
YBX3-218ENST00000546298 CC2D2AQ9P2K1 1620 aa18.38■□□□□ 0.53
YBX3-218ENST00000546298 NCAPD3P42695 1498 aa17.96■□□□□ 0.47
YBX3-218ENST00000546298 ATAD2BQ9ULI0 1458 aa17.9■□□□□ 0.46
YBX3-218ENST00000546298 SMARCA2P51531 1590 aa17.85■□□□□ 0.45
YBX3-218ENST00000546298 SMARCA4P51532 1647 aa17.83■□□□□ 0.45
YBX3-218ENST00000546298 BAZ1AQ9NRL2 1556 aaPredicted RBP17.83■□□□□ 0.45
YBX3-218ENST00000546298 HMGXB3Q12766 1538 aa17.77■□□□□ 0.44
YBX3-218ENST00000546298 BAZ1BQ9UIG0 1483 aaKnown RBP17.74■□□□□ 0.43
YBX3-218ENST00000546298 MROH2BQ7Z745 1585 aa17.69■□□□□ 0.42
YBX3-218ENST00000546298 PEG3Q9GZU2 1588 aa17.68■□□□□ 0.42
YBX3-218ENST00000546298 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
YBX3-218ENST00000546298 AEBP2Q6ZN18 517 aaPredicted RBP17.62■□□□□ 0.41
YBX3-218ENST00000546298 CUX2O14529 1486 aa17.56■□□□□ 0.4
YBX3-218ENST00000546298 NESP48681 1621 aa17.54■□□□□ 0.4
YBX3-218ENST00000546298 LAMC3Q9Y6N6 1575 aa17.46■□□□□ 0.39
YBX3-218ENST00000546298 DNAJC5Q9H3Z4 198 aa17.46■□□□□ 0.39
YBX3-218ENST00000546298 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
YBX3-218ENST00000546298 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
YBX3-218ENST00000546298 RSF1Q96T23 1441 aaPredicted RBP17.45■□□□□ 0.38
YBX3-218ENST00000546298 WIZO95785 1651 aa17.41■□□□□ 0.38
YBX3-218ENST00000546298 TOP2AP11388 1531 aaKnown RBP17.28■□□□□ 0.36
YBX3-218ENST00000546298 THOC2Q8NI27 1593 aaKnown RBP17.27■□□□□ 0.35
YBX3-218ENST00000546298 CFTRP13569 1480 aa17.24■□□□□ 0.35
YBX3-218ENST00000546298 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
YBX3-218ENST00000546298 KIF21AQ7Z4S6 1674 aa17.2■□□□□ 0.34
YBX3-218ENST00000546298 FANCD2Q9BXW9 1451 aa17.2■□□□□ 0.34
YBX3-218ENST00000546298 CEP164Q9UPV0 1460 aa17.2■□□□□ 0.34
YBX3-218ENST00000546298 WDR62O43379 1518 aa17.14■□□□□ 0.33
YBX3-218ENST00000546298 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
YBX3-218ENST00000546298 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
YBX3-218ENST00000546298 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
YBX3-218ENST00000546298 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
YBX3-218ENST00000546298 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
YBX3-218ENST00000546298 TOPBP1Q92547 1522 aa16.87■□□□□ 0.29
YBX3-218ENST00000546298 SUPT5HO00267 1087 aaKnown RBP16.86■□□□□ 0.29
YBX3-218ENST00000546298 PRDM2Q13029 1718 aa16.84■□□□□ 0.29
YBX3-218ENST00000546298 DNMBPQ6XZF7 1577 aa16.8■□□□□ 0.28
YBX3-218ENST00000546298 ZNF608Q9ULD9 1512 aaPredicted RBP16.78■□□□□ 0.28
YBX3-218ENST00000546298 TRIM41Q8WV44 630 aa16.74■□□□□ 0.27
YBX3-218ENST00000546298 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
YBX3-218ENST00000546298 SOGA1O94964 1423 aa16.7■□□□□ 0.26
YBX3-218ENST00000546298 AQRO60306 1485 aaKnown RBP eCLIP16.68■□□□□ 0.268e-6■■■■□ 23.2
YBX3-218ENST00000546298 TDRD9Q8NDG6 1382 aaKnown RBP16.65■□□□□ 0.26
YBX3-218ENST00000546298 RAD54L2Q9Y4B4 1467 aa16.65■□□□□ 0.26
YBX3-218ENST00000546298 FBLN2P98095 1184 aa16.64■□□□□ 0.25
YBX3-218ENST00000546298 FGD5Q6ZNL6 1462 aa16.63■□□□□ 0.25
YBX3-218ENST00000546298 TARBP1Q13395 1621 aaKnown RBP16.63■□□□□ 0.25
YBX3-218ENST00000546298 EIF4G3O43432 1585 aaKnown RBP16.62■□□□□ 0.25
YBX3-218ENST00000546298 CUX1P39880 1505 aa16.6■□□□□ 0.25
YBX3-218ENST00000546298 CHMP7Q8WUX9 453 aaPredicted RBP16.56■□□□□ 0.24
YBX3-218ENST00000546298 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
YBX3-218ENST00000546298 GRIN2BQ13224 1484 aa16.52■□□□□ 0.23
YBX3-218ENST00000546298 CHIC1Q5VXU3 224 aa16.51■□□□□ 0.23
YBX3-218ENST00000546298 SNAPC4Q5SXM2 1469 aa16.5■□□□□ 0.23
YBX3-218ENST00000546298 MAGI1Q96QZ7 1491 aaPredicted RBP16.49■□□□□ 0.23
YBX3-218ENST00000546298 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
YBX3-218ENST00000546298 ARHGEF11O15085 1522 aa16.48■□□□□ 0.23
YBX3-218ENST00000546298 GAPVD1Q14C86 1478 aa16.47■□□□□ 0.23
YBX3-218ENST00000546298 ABCA10Q8WWZ4 1543 aa16.46■□□□□ 0.23
YBX3-218ENST00000546298 CYB5RLQ6IPT4 315 aa16.46■□□□□ 0.23
YBX3-218ENST00000546298 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
YBX3-218ENST00000546298 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
YBX3-218ENST00000546298 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
YBX3-218ENST00000546298 SYNJ2O15056 1496 aa16.43■□□□□ 0.22
YBX3-218ENST00000546298 CHD1O14646 1710 aa16.4■□□□□ 0.22
YBX3-218ENST00000546298 SYNJ1O43426 1573 aa16.37■□□□□ 0.21
YBX3-218ENST00000546298 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
YBX3-218ENST00000546298 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
YBX3-218ENST00000546298 ABCA5Q8WWZ7 1642 aa16.33■□□□□ 0.2
YBX3-218ENST00000546298 CLASP1Q7Z460 1538 aa16.32■□□□□ 0.2
YBX3-218ENST00000546298 BIVM-ERCC5R4GMW8 1640 aa16.31■□□□□ 0.2
YBX3-218ENST00000546298 FHAD1B1AJZ9 1412 aa16.3■□□□□ 0.2
YBX3-218ENST00000546298 GRIN2AQ12879 1464 aa16.27■□□□□ 0.19
YBX3-218ENST00000546298 PBRM1Q86U86 1689 aa16.27■□□□□ 0.19
YBX3-218ENST00000546298 ERICH3Q5RHP9 1530 aa16.25■□□□□ 0.19
YBX3-218ENST00000546298 TRHP20396 242 aaPredicted RBP16.25■□□□□ 0.19
YBX3-218ENST00000546298 NUP160Q12769 1436 aa16.23■□□□□ 0.19
YBX3-218ENST00000546298 ADAMTS12P58397 1594 aa16.21■□□□□ 0.19
YBX3-218ENST00000546298 KIF27Q86VH2 1401 aa16.18■□□□□ 0.18
YBX3-218ENST00000546298 JPH4Q96JJ6 628 aa16.15■□□□□ 0.18
YBX3-218ENST00000546298 IGF1RP08069 1367 aa16.14■□□□□ 0.17
YBX3-218ENST00000546298 CEP170Q5SW79 1584 aa16.13■□□□□ 0.17
YBX3-218ENST00000546298 PRG4Q92954 1404 aaPredicted RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms