RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 NISCHQ9Y2I1 1504 aa29.04■■■□□ 2.24
YBX3-217ENST00000546164 CCDC180Q9P1Z9 1646 aa25.84■■□□□ 1.73
YBX3-217ENST00000546164 AEBP2Q6ZN18 517 aaPredicted RBP25.54■■□□□ 1.68
YBX3-217ENST00000546164 ABCC9O60706 1549 aa25.32■■□□□ 1.64
YBX3-217ENST00000546164 RB1CC1Q8TDY2 1594 aa24.36■■□□□ 1.49
YBX3-217ENST00000546164 NACADO15069 1562 aa24.33■■□□□ 1.49
YBX3-217ENST00000546164 MYO15BQ96JP2 1530 aa24.23■■□□□ 1.47
YBX3-217ENST00000546164 DCAF8L2P0C7V8 631 aa24.2■■□□□ 1.46
YBX3-217ENST00000546164 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
YBX3-217ENST00000546164 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.45
YBX3-217ENST00000546164 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
YBX3-217ENST00000546164 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
YBX3-217ENST00000546164 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.383e-7■■□□□ 12.6
YBX3-217ENST00000546164 BICRAQ9NZM4 1560 aa23.63■■□□□ 1.37
YBX3-217ENST00000546164 SCRIBQ14160 1630 aa23.51■■□□□ 1.35
YBX3-217ENST00000546164 SHROOM4Q9ULL8 1493 aa23.46■■□□□ 1.35
YBX3-217ENST00000546164 DNAJC5BQ9UF47 199 aa23.34■■□□□ 1.33
YBX3-217ENST00000546164 EIF4G1Q04637 1599 aaKnown RBP23.01■■□□□ 1.27
YBX3-217ENST00000546164 CC2D2AQ9P2K1 1620 aa22.91■■□□□ 1.26
YBX3-217ENST00000546164 CECR2Q9BXF3 1484 aa22.79■■□□□ 1.24
YBX3-217ENST00000546164 SMARCA4P51532 1647 aa22.53■■□□□ 1.2
YBX3-217ENST00000546164 BAZ1AQ9NRL2 1556 aaPredicted RBP22.51■■□□□ 1.19
YBX3-217ENST00000546164 NCAPD3P42695 1498 aa22.48■■□□□ 1.19
YBX3-217ENST00000546164 ATAD2BQ9ULI0 1458 aa22.46■■□□□ 1.19
YBX3-217ENST00000546164 SMARCA2P51531 1590 aa22.42■■□□□ 1.18
YBX3-217ENST00000546164 MROH2BQ7Z745 1585 aa22.36■■□□□ 1.17
YBX3-217ENST00000546164 PEG3Q9GZU2 1588 aa22.36■■□□□ 1.17
YBX3-217ENST00000546164 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
YBX3-217ENST00000546164 BAZ1BQ9UIG0 1483 aaKnown RBP22.24■■□□□ 1.15
YBX3-217ENST00000546164 RSF1Q96T23 1441 aaPredicted RBP22.11■■□□□ 1.13
YBX3-217ENST00000546164 WIZO95785 1651 aa22.07■■□□□ 1.12
YBX3-217ENST00000546164 SENP3Q9H4L4 574 aaPredicted RBP22.05■■□□□ 1.12
YBX3-217ENST00000546164 NESP48681 1621 aa21.89■■□□□ 1.09
YBX3-217ENST00000546164 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.09
YBX3-217ENST00000546164 LAMC3Q9Y6N6 1575 aa21.87■■□□□ 1.09
YBX3-217ENST00000546164 ERCC6Q03468 1493 aa21.83■■□□□ 1.09
YBX3-217ENST00000546164 CADPSQ9ULU8 1353 aa21.81■■□□□ 1.08
YBX3-217ENST00000546164 PDS5BQ9NTI5 1447 aa21.73■■□□□ 1.07
YBX3-217ENST00000546164 CUX2O14529 1486 aa21.69■■□□□ 1.06
YBX3-217ENST00000546164 CFTRP13569 1480 aa21.67■■□□□ 1.06
YBX3-217ENST00000546164 CCDC88BA6NC98 1476 aa21.63■■□□□ 1.05
YBX3-217ENST00000546164 THOC2Q8NI27 1593 aaKnown RBP21.6■■□□□ 1.05
YBX3-217ENST00000546164 KIF21AQ7Z4S6 1674 aa21.6■■□□□ 1.05
YBX3-217ENST00000546164 PHF23Q9BUL5 403 aaPredicted RBP21.57■■□□□ 1.04
YBX3-217ENST00000546164 FANCD2Q9BXW9 1451 aa21.53■■□□□ 1.04
YBX3-217ENST00000546164 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.03
YBX3-217ENST00000546164 MRC2Q9UBG0 1479 aa21.51■■□□□ 1.03
YBX3-217ENST00000546164 WDR62O43379 1518 aa21.45■■□□□ 1.02
YBX3-217ENST00000546164 PRDM2Q13029 1718 aa21.41■■□□□ 1.02
YBX3-217ENST00000546164 SUPT5HO00267 1087 aaKnown RBP21.4■■□□□ 1.02
YBX3-217ENST00000546164 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
YBX3-217ENST00000546164 ABCC8Q09428 1581 aa21.2■□□□□ 0.98
YBX3-217ENST00000546164 TOPBP1Q92547 1522 aa21.18■□□□□ 0.98
YBX3-217ENST00000546164 DNMBPQ6XZF7 1577 aa21.14■□□□□ 0.98
YBX3-217ENST00000546164 DNAJC5Q9H3Z4 198 aa21.11■□□□□ 0.97
YBX3-217ENST00000546164 IFT140Q96RY7 1462 aa21.09■□□□□ 0.97
YBX3-217ENST00000546164 POLA1P09884 1462 aaPredicted RBP21.01■□□□□ 0.95
YBX3-217ENST00000546164 CUX1P39880 1505 aa20.99■□□□□ 0.95
YBX3-217ENST00000546164 ZNF608Q9ULD9 1512 aaPredicted RBP20.96■□□□□ 0.95
YBX3-217ENST00000546164 TARBP1Q13395 1621 aaKnown RBP20.95■□□□□ 0.94
YBX3-217ENST00000546164 FGD5Q6ZNL6 1462 aa20.92■□□□□ 0.94
YBX3-217ENST00000546164 SOGA1O94964 1423 aa20.9■□□□□ 0.94
YBX3-217ENST00000546164 RAD54L2Q9Y4B4 1467 aa20.88■□□□□ 0.93
YBX3-217ENST00000546164 EIF4G3O43432 1585 aaKnown RBP20.86■□□□□ 0.93
YBX3-217ENST00000546164 AQRO60306 1485 aaKnown RBP eCLIP20.83■□□□□ 0.935e-7■■■■■ 28.1
YBX3-217ENST00000546164 WRNQ14191 1432 aaPredicted RBP eCLIP20.83■□□□□ 0.93
YBX3-217ENST00000546164 WDR97A6NE52 1622 aa20.82■□□□□ 0.92
YBX3-217ENST00000546164 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
YBX3-217ENST00000546164 TDRD9Q8NDG6 1382 aaKnown RBP20.78■□□□□ 0.92
YBX3-217ENST00000546164 BIVM-ERCC5R4GMW8 1640 aa20.78■□□□□ 0.92
YBX3-217ENST00000546164 OSCARQ8IYS5 282 aa20.76■□□□□ 0.91
YBX3-217ENST00000546164 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
YBX3-217ENST00000546164 ABCA10Q8WWZ4 1543 aa20.75■□□□□ 0.91
YBX3-217ENST00000546164 GRIN2BQ13224 1484 aa20.69■□□□□ 0.9
YBX3-217ENST00000546164 GAPVD1Q14C86 1478 aa20.67■□□□□ 0.9
YBX3-217ENST00000546164 MAGI1Q96QZ7 1491 aaPredicted RBP20.65■□□□□ 0.9
YBX3-217ENST00000546164 ABCA5Q8WWZ7 1642 aa20.64■□□□□ 0.9
YBX3-217ENST00000546164 SNAPC4Q5SXM2 1469 aa20.64■□□□□ 0.89
YBX3-217ENST00000546164 CHD1O14646 1710 aa20.57■□□□□ 0.88
YBX3-217ENST00000546164 SYNJ2O15056 1496 aa20.56■□□□□ 0.88
YBX3-217ENST00000546164 FBLN2P98095 1184 aa20.56■□□□□ 0.88
YBX3-217ENST00000546164 PBRM1Q86U86 1689 aa20.56■□□□□ 0.88
YBX3-217ENST00000546164 FOXD1Q16676 465 aa20.55■□□□□ 0.88
YBX3-217ENST00000546164 CHMP7Q8WUX9 453 aaPredicted RBP20.53■□□□□ 0.88
YBX3-217ENST00000546164 ERICH3Q5RHP9 1530 aa20.49■□□□□ 0.87
YBX3-217ENST00000546164 POTEDQ86YR6 584 aa20.49■□□□□ 0.87
YBX3-217ENST00000546164 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
YBX3-217ENST00000546164 FHAD1B1AJZ9 1412 aa20.44■□□□□ 0.86
YBX3-217ENST00000546164 CLASP1Q7Z460 1538 aa20.43■□□□□ 0.86
YBX3-217ENST00000546164 KIF27Q86VH2 1401 aa20.42■□□□□ 0.86
YBX3-217ENST00000546164 GRIN2AQ12879 1464 aa20.42■□□□□ 0.86
YBX3-217ENST00000546164 ARHGEF11O15085 1522 aa20.41■□□□□ 0.86
YBX3-217ENST00000546164 RIMBP3CA6NJZ7 1639 aa20.39■□□□□ 0.86
YBX3-217ENST00000546164 RIMBP3BA6NNM3 1639 aa20.39■□□□□ 0.86
YBX3-217ENST00000546164 RIMBP3Q9UFD9 1639 aa20.39■□□□□ 0.86
YBX3-217ENST00000546164 NUP160Q12769 1436 aa20.36■□□□□ 0.85
YBX3-217ENST00000546164 IGF1RP08069 1367 aa20.34■□□□□ 0.85
YBX3-217ENST00000546164 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
YBX3-217ENST00000546164 CEP170Q5SW79 1584 aa20.29■□□□□ 0.84
YBX3-217ENST00000546164 CUL7Q14999 1698 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms