RNA–Protein interactions for RNA: ENST00000545869.5

PDCD2-214, Transcript of programmed cell death 2, humanhuman

TSL 5

Gene PDCD2, Length 900 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-214ENST00000545869 NISCHQ9Y2I1 1504 aa59.54■■■■■ 7.12
PDCD2-214ENST00000545869 ABCC9O60706 1549 aa53.83■■■■■ 6.21
PDCD2-214ENST00000545869 CCDC180Q9P1Z9 1646 aa53.53■■■■■ 6.16
PDCD2-214ENST00000545869 RB1CC1Q8TDY2 1594 aa51.04■■■■■ 5.76
PDCD2-214ENST00000545869 DNAJC5BQ9UF47 199 aa50.8■■■■■ 5.72
PDCD2-214ENST00000545869 NACADO15069 1562 aa50.63■■■■■ 5.7
PDCD2-214ENST00000545869 DCAF8L2P0C7V8 631 aa50.23■■■■■ 5.63
PDCD2-214ENST00000545869 UNC13AQ9UPW8 1703 aa50.05■■■■■ 5.6
PDCD2-214ENST00000545869 PABPN1Q86U42 306 aaKnown RBP eCLIP50.05■■■■■ 5.6
PDCD2-214ENST00000545869 MYO15BQ96JP2 1530 aa49.84■■■■■ 5.57
PDCD2-214ENST00000545869 BICRAQ9NZM4 1560 aa49.72■■■■■ 5.55
PDCD2-214ENST00000545869 ZCCHC6Q5VYS8 1495 aaKnown RBP49.32■■■■■ 5.49
PDCD2-214ENST00000545869 DCAF1Q9Y4B6 1507 aa49.13■■■■■ 5.45
PDCD2-214ENST00000545869 SHROOM4Q9ULL8 1493 aa48.84■■■■■ 5.41
PDCD2-214ENST00000545869 SCRIBQ14160 1630 aa48.83■■■■■ 5.41
PDCD2-214ENST00000545869 CC2D2AQ9P2K1 1620 aa48.62■■■■■ 5.37
PDCD2-214ENST00000545869 CECR2Q9BXF3 1484 aa48.48■■■■■ 5.35
PDCD2-214ENST00000545869 EIF4G1Q04637 1599 aaKnown RBP48.45■■■■■ 5.35
PDCD2-214ENST00000545869 NCAPD3P42695 1498 aa46.76■■■■■ 5.08
PDCD2-214ENST00000545869 DNAJC5Q9H3Z4 198 aa46.69■■■■■ 5.06
PDCD2-214ENST00000545869 ATAD2BQ9ULI0 1458 aa46.63■■■■■ 5.05
PDCD2-214ENST00000545869 SMARCA4P51532 1647 aa46.54■■■■■ 5.04
PDCD2-214ENST00000545869 CUX2O14529 1486 aa46.42■■■■■ 5.02
PDCD2-214ENST00000545869 SMARCA2P51531 1590 aa46.41■■■■■ 5.02
PDCD2-214ENST00000545869 HMGXB3Q12766 1538 aa46.41■■■■■ 5.02
PDCD2-214ENST00000545869 ERCC6Q03468 1493 aa46.39■■■■■ 5.02
PDCD2-214ENST00000545869 NESP48681 1621 aa46.23■■■■■ 4.99
PDCD2-214ENST00000545869 BAZ1AQ9NRL2 1556 aaPredicted RBP46.19■■■■■ 4.99
PDCD2-214ENST00000545869 BAZ1BQ9UIG0 1483 aaKnown RBP46.11■■■■■ 4.97
PDCD2-214ENST00000545869 PEG3Q9GZU2 1588 aa46.06■■■■■ 4.96
PDCD2-214ENST00000545869 MROH2BQ7Z745 1585 aa45.94■■■■■ 4.94
PDCD2-214ENST00000545869 THOC2Q8NI27 1593 aaKnown RBP45.81■■■■■ 4.92
PDCD2-214ENST00000545869 LAMC3Q9Y6N6 1575 aa45.74■■■■■ 4.91
PDCD2-214ENST00000545869 KIF21AQ7Z4S6 1674 aa45.62■■■■■ 4.89
PDCD2-214ENST00000545869 PDS5BQ9NTI5 1447 aa45.42■■■■■ 4.86
PDCD2-214ENST00000545869 WIZO95785 1651 aa45.37■■■■■ 4.85
PDCD2-214ENST00000545869 CADPSQ9ULU8 1353 aa45.31■■■■■ 4.84
PDCD2-214ENST00000545869 MRC2Q9UBG0 1479 aa45.13■■■■■ 4.82
PDCD2-214ENST00000545869 WDR62O43379 1518 aa45.07■■■■■ 4.81
PDCD2-214ENST00000545869 CEP164Q9UPV0 1460 aa44.88■■■■■ 4.78
PDCD2-214ENST00000545869 RSF1Q96T23 1441 aaPredicted RBP44.84■■■■■ 4.77
PDCD2-214ENST00000545869 FANCD2Q9BXW9 1451 aa44.84■■■■■ 4.77
PDCD2-214ENST00000545869 CFTRP13569 1480 aa44.78■■■■■ 4.76
PDCD2-214ENST00000545869 TOP2AP11388 1531 aaKnown RBP44.73■■■■■ 4.75
PDCD2-214ENST00000545869 URB2Q14146 1524 aaKnown RBP44.55■■■■■ 4.72
PDCD2-214ENST00000545869 TRIM41Q8WV44 630 aa44.54■■■■■ 4.72
PDCD2-214ENST00000545869 PRDM2Q13029 1718 aa44.34■■■■■ 4.69
PDCD2-214ENST00000545869 CCDC88BA6NC98 1476 aa44.23■■■■■ 4.67
PDCD2-214ENST00000545869 OSCARQ8IYS5 282 aa44.18■■■■■ 4.66
PDCD2-214ENST00000545869 ZNF608Q9ULD9 1512 aaPredicted RBP44.05■■■■■ 4.64
PDCD2-214ENST00000545869 IFT140Q96RY7 1462 aa43.98■■■■■ 4.63
PDCD2-214ENST00000545869 TOPBP1Q92547 1522 aa43.98■■■■■ 4.63
PDCD2-214ENST00000545869 RIMBP3CA6NJZ7 1639 aa43.81■■■■■ 4.6
PDCD2-214ENST00000545869 RIMBP3BA6NNM3 1639 aa43.81■■■■■ 4.6
PDCD2-214ENST00000545869 RIMBP3Q9UFD9 1639 aa43.81■■■■■ 4.6
PDCD2-214ENST00000545869 EIF4G3O43432 1585 aaKnown RBP43.78■■■■■ 4.6
PDCD2-214ENST00000545869 DNMBPQ6XZF7 1577 aa43.78■■■■■ 4.6
PDCD2-214ENST00000545869 ABCC8Q09428 1581 aa43.72■■■■■ 4.59
PDCD2-214ENST00000545869 TARBP1Q13395 1621 aaKnown RBP43.66■■■■■ 4.58
PDCD2-214ENST00000545869 ARHGEF11O15085 1522 aa43.63■■■■■ 4.57
PDCD2-214ENST00000545869 AQRO60306 1485 aaKnown RBP eCLIP43.57■■■■■ 4.569e-7■■■■■ 36.8
PDCD2-214ENST00000545869 POLA1P09884 1462 aaPredicted RBP43.52■■■■■ 4.56
PDCD2-214ENST00000545869 CHD1O14646 1710 aa43.52■■■■■ 4.56
PDCD2-214ENST00000545869 RAD54L2Q9Y4B4 1467 aa43.39■■■■■ 4.54
PDCD2-214ENST00000545869 SOGA1O94964 1423 aa43.24■■■■■ 4.51
PDCD2-214ENST00000545869 TDRD9Q8NDG6 1382 aaKnown RBP43.24■■■■■ 4.51
PDCD2-214ENST00000545869 CYB5RLQ6IPT4 315 aa43.22■■■■■ 4.51
PDCD2-214ENST00000545869 FGD5Q6ZNL6 1462 aa43.21■■■■■ 4.51
PDCD2-214ENST00000545869 ARAP1Q96P48 1450 aa43.21■■■■■ 4.51
PDCD2-214ENST00000545869 FBLN2P98095 1184 aa43.21■■■■■ 4.51
PDCD2-214ENST00000545869 CUX1P39880 1505 aa43.17■■■■■ 4.5
PDCD2-214ENST00000545869 SNAPC4Q5SXM2 1469 aa43.13■■■■■ 4.49
PDCD2-214ENST00000545869 WDR97A6NE52 1622 aa43.07■■■■■ 4.48
PDCD2-214ENST00000545869 CLASP1Q7Z460 1538 aa43.01■■■■■ 4.48
PDCD2-214ENST00000545869 MAGI1Q96QZ7 1491 aaPredicted RBP42.93■■■■■ 4.46
PDCD2-214ENST00000545869 GRIN2BQ13224 1484 aa42.91■■■■■ 4.46
PDCD2-214ENST00000545869 SYNJ1O43426 1573 aa42.86■■■■■ 4.45
PDCD2-214ENST00000545869 CHMP7Q8WUX9 453 aaPredicted RBP42.83■■■■■ 4.45
PDCD2-214ENST00000545869 PBRM1Q86U86 1689 aa42.81■■■■■ 4.44
PDCD2-214ENST00000545869 SYNJ2O15056 1496 aa42.81■■■■■ 4.44
PDCD2-214ENST00000545869 TRHP20396 242 aaPredicted RBP42.77■■■■■ 4.44
PDCD2-214ENST00000545869 GAPVD1Q14C86 1478 aa42.73■■■■■ 4.43
PDCD2-214ENST00000545869 ABCA5Q8WWZ7 1642 aa42.7■■■■■ 4.43
PDCD2-214ENST00000545869 ABCA10Q8WWZ4 1543 aa42.68■■■■■ 4.42
PDCD2-214ENST00000545869 SUPT5HO00267 1087 aaKnown RBP42.58■■■■■ 4.41
PDCD2-214ENST00000545869 GRIN2AQ12879 1464 aa42.4■■■■■ 4.38
PDCD2-214ENST00000545869 ADAMTS12P58397 1594 aa42.39■■■■■ 4.38
PDCD2-214ENST00000545869 ERCC6L2Q5T890 1561 aa42.39■■■■■ 4.38
PDCD2-214ENST00000545869 BIVM-ERCC5R4GMW8 1640 aa42.38■■■■■ 4.38
PDCD2-214ENST00000545869 WRNQ14191 1432 aaPredicted RBP eCLIP42.37■■■■■ 4.37
PDCD2-214ENST00000545869 TOP2BQ02880 1626 aa42.35■■■■■ 4.37
PDCD2-214ENST00000545869 CEP170Q5SW79 1584 aa42.33■■■■■ 4.37
PDCD2-214ENST00000545869 NUP160Q12769 1436 aa42.28■■■■■ 4.36
PDCD2-214ENST00000545869 FHAD1B1AJZ9 1412 aa42.16■■■■■ 4.34
PDCD2-214ENST00000545869 SHROOM2Q13796 1616 aa42.16■■■■■ 4.34
PDCD2-214ENST00000545869 ERICH3Q5RHP9 1530 aa42.1■■■■■ 4.33
PDCD2-214ENST00000545869 PRG4Q92954 1404 aaPredicted RBP41.86■■■■■ 4.29
PDCD2-214ENST00000545869 RUSC2Q8N2Y8 1516 aa41.8■■■■■ 4.28
PDCD2-214ENST00000545869 KIF13AQ9H1H9 1805 aa41.76■■■■■ 4.28
PDCD2-214ENST00000545869 JPH4Q96JJ6 628 aa41.74■■■■■ 4.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms