RNA–Protein interactions for RNA: ENST00000545493.1

SCARB1-210, Transcript of scavenger receptor class B member 1, humanhuman

TSL 2

Gene SCARB1, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-210ENST00000545493 NISCHQ9Y2I1 1504 aa52.8■■■■■ 6.04
SCARB1-210ENST00000545493 CCDC180Q9P1Z9 1646 aa47.3■■■■■ 5.16
SCARB1-210ENST00000545493 ABCC9O60706 1549 aa46.82■■■■■ 5.09
SCARB1-210ENST00000545493 RB1CC1Q8TDY2 1594 aa44.76■■■■■ 4.76
SCARB1-210ENST00000545493 NACADO15069 1562 aa44.54■■■■■ 4.72
SCARB1-210ENST00000545493 DCAF8L2P0C7V8 631 aa44.11■■■■■ 4.65
SCARB1-210ENST00000545493 MYO15BQ96JP2 1530 aa44.08■■■■■ 4.65
SCARB1-210ENST00000545493 ZCCHC6Q5VYS8 1495 aaKnown RBP43.91■■■■■ 4.62
SCARB1-210ENST00000545493 UNC13AQ9UPW8 1703 aa43.87■■■■■ 4.61
SCARB1-210ENST00000545493 DCAF1Q9Y4B6 1507 aa43.66■■■■■ 4.58
SCARB1-210ENST00000545493 PABPN1Q86U42 306 aaKnown RBP eCLIP43.54■■■■■ 4.56
SCARB1-210ENST00000545493 BICRAQ9NZM4 1560 aa43.51■■■■■ 4.56
SCARB1-210ENST00000545493 DNAJC5BQ9UF47 199 aa43.5■■■■■ 4.55
SCARB1-210ENST00000545493 SCRIBQ14160 1630 aa43.1■■■■■ 4.49
SCARB1-210ENST00000545493 SHROOM4Q9ULL8 1493 aa42.95■■■■■ 4.47
SCARB1-210ENST00000545493 EIF4G1Q04637 1599 aaKnown RBP42.39■■■■■ 4.38
SCARB1-210ENST00000545493 CC2D2AQ9P2K1 1620 aa42.37■■■■■ 4.37
SCARB1-210ENST00000545493 CECR2Q9BXF3 1484 aa42.13■■■■■ 4.34
SCARB1-210ENST00000545493 SMARCA4P51532 1647 aa41.16■■■■■ 4.18
SCARB1-210ENST00000545493 NCAPD3P42695 1498 aa41.08■■■■■ 4.17
SCARB1-210ENST00000545493 ATAD2BQ9ULI0 1458 aa41.04■■■■■ 4.16
SCARB1-210ENST00000545493 BAZ1AQ9NRL2 1556 aaPredicted RBP40.96■■■■■ 4.15
SCARB1-210ENST00000545493 SMARCA2P51531 1590 aa40.95■■■■■ 4.15
SCARB1-210ENST00000545493 HMGXB3Q12766 1538 aa40.91■■■■■ 4.14
SCARB1-210ENST00000545493 PEG3Q9GZU2 1588 aa40.78■■■■■ 4.12
SCARB1-210ENST00000545493 MROH2BQ7Z745 1585 aa40.7■■■■■ 4.11
SCARB1-210ENST00000545493 BAZ1BQ9UIG0 1483 aaKnown RBP40.66■■■■■ 4.1
SCARB1-210ENST00000545493 ERCC6Q03468 1493 aa40.37■■■■■ 4.05
SCARB1-210ENST00000545493 NESP48681 1621 aa40.36■■■■■ 4.05
SCARB1-210ENST00000545493 WIZO95785 1651 aa40.25■■■■■ 4.03
SCARB1-210ENST00000545493 CUX2O14529 1486 aa40.21■■■■■ 4.03
SCARB1-210ENST00000545493 LAMC3Q9Y6N6 1575 aa40.14■■■■■ 4.02
SCARB1-210ENST00000545493 THOC2Q8NI27 1593 aaKnown RBP39.99■■■■□ 3.99
SCARB1-210ENST00000545493 RSF1Q96T23 1441 aaPredicted RBP39.95■■■■□ 3.99
SCARB1-210ENST00000545493 KIF21AQ7Z4S6 1674 aa39.94■■■■□ 3.98
SCARB1-210ENST00000545493 CADPSQ9ULU8 1353 aa39.82■■■■□ 3.96
SCARB1-210ENST00000545493 PDS5BQ9NTI5 1447 aa39.8■■■■□ 3.96
SCARB1-210ENST00000545493 TOP2AP11388 1531 aaKnown RBP39.79■■■■□ 3.96
SCARB1-210ENST00000545493 DNAJC5Q9H3Z4 198 aa39.61■■■■□ 3.93
SCARB1-210ENST00000545493 MRC2Q9UBG0 1479 aa39.53■■■■□ 3.92
SCARB1-210ENST00000545493 CFTRP13569 1480 aa39.5■■■■□ 3.91
SCARB1-210ENST00000545493 WDR62O43379 1518 aa39.48■■■■□ 3.91
SCARB1-210ENST00000545493 CEP164Q9UPV0 1460 aa39.43■■■■□ 3.9
SCARB1-210ENST00000545493 FANCD2Q9BXW9 1451 aa39.42■■■■□ 3.9
SCARB1-210ENST00000545493 PRDM2Q13029 1718 aa39.27■■■■□ 3.88
SCARB1-210ENST00000545493 CCDC88BA6NC98 1476 aa39.24■■■■□ 3.87
SCARB1-210ENST00000545493 URB2Q14146 1524 aaKnown RBP39.11■■■■□ 3.85
SCARB1-210ENST00000545493 TOPBP1Q92547 1522 aa38.73■■■■□ 3.79
SCARB1-210ENST00000545493 DNMBPQ6XZF7 1577 aa38.66■■■■□ 3.78
SCARB1-210ENST00000545493 IFT140Q96RY7 1462 aa38.61■■■■□ 3.77
SCARB1-210ENST00000545493 ABCC8Q09428 1581 aa38.59■■■■□ 3.77
SCARB1-210ENST00000545493 ZNF608Q9ULD9 1512 aaPredicted RBP38.55■■■■□ 3.76
SCARB1-210ENST00000545493 EIF4G3O43432 1585 aaKnown RBP38.44■■■■□ 3.74
SCARB1-210ENST00000545493 TARBP1Q13395 1621 aaKnown RBP38.41■■■■□ 3.74
SCARB1-210ENST00000545493 POLA1P09884 1462 aaPredicted RBP38.38■■■■□ 3.73
SCARB1-210ENST00000545493 SUPT5HO00267 1087 aaKnown RBP38.28■■■■□ 3.72
SCARB1-210ENST00000545493 OSCARQ8IYS5 282 aa38.24■■■■□ 3.71
SCARB1-210ENST00000545493 CUX1P39880 1505 aa38.23■■■■□ 3.71
SCARB1-210ENST00000545493 RAD54L2Q9Y4B4 1467 aa38.2■■■■□ 3.71
SCARB1-210ENST00000545493 AQRO60306 1485 aaKnown RBP eCLIP38.19■■■■□ 3.71e-8■■■■□ 22
SCARB1-210ENST00000545493 FGD5Q6ZNL6 1462 aa38.18■■■■□ 3.7
SCARB1-210ENST00000545493 SOGA1O94964 1423 aa38.09■■■■□ 3.69
SCARB1-210ENST00000545493 CHD1O14646 1710 aa38.07■■■■□ 3.69
SCARB1-210ENST00000545493 WDR97A6NE52 1622 aa38.05■■■■□ 3.68
SCARB1-210ENST00000545493 TRIM41Q8WV44 630 aa38.03■■■■□ 3.68
SCARB1-210ENST00000545493 TDRD9Q8NDG6 1382 aaKnown RBP37.97■■■■□ 3.67
SCARB1-210ENST00000545493 RIMBP3CA6NJZ7 1639 aa37.95■■■■□ 3.67
SCARB1-210ENST00000545493 RIMBP3BA6NNM3 1639 aa37.95■■■■□ 3.67
SCARB1-210ENST00000545493 RIMBP3Q9UFD9 1639 aa37.95■■■■□ 3.67
SCARB1-210ENST00000545493 SNAPC4Q5SXM2 1469 aa37.89■■■■□ 3.66
SCARB1-210ENST00000545493 ARHGEF11O15085 1522 aa37.86■■■■□ 3.65
SCARB1-210ENST00000545493 PBRM1Q86U86 1689 aa37.79■■■■□ 3.64
SCARB1-210ENST00000545493 GRIN2BQ13224 1484 aa37.78■■■■□ 3.64
SCARB1-210ENST00000545493 ABCA10Q8WWZ4 1543 aa37.77■■■■□ 3.64
SCARB1-210ENST00000545493 MAGI1Q96QZ7 1491 aaPredicted RBP37.77■■■■□ 3.64
SCARB1-210ENST00000545493 ABCA5Q8WWZ7 1642 aa37.76■■■■□ 3.64
SCARB1-210ENST00000545493 BIVM-ERCC5R4GMW8 1640 aa37.76■■■■□ 3.64
SCARB1-210ENST00000545493 TOP2BQ02880 1626 aa37.72■■■■□ 3.63
SCARB1-210ENST00000545493 SYNJ1O43426 1573 aa37.72■■■■□ 3.63
SCARB1-210ENST00000545493 FBLN2P98095 1184 aa37.71■■■■□ 3.63
SCARB1-210ENST00000545493 GAPVD1Q14C86 1478 aa37.69■■■■□ 3.62
SCARB1-210ENST00000545493 WRNQ14191 1432 aaPredicted RBP eCLIP37.66■■■■□ 3.62
SCARB1-210ENST00000545493 CLASP1Q7Z460 1538 aa37.64■■■■□ 3.62
SCARB1-210ENST00000545493 SYNJ2O15056 1496 aa37.64■■■■□ 3.62
SCARB1-210ENST00000545493 ARAP1Q96P48 1450 aa37.52■■■■□ 3.6
SCARB1-210ENST00000545493 CHMP7Q8WUX9 453 aaPredicted RBP37.51■■■■□ 3.6
SCARB1-210ENST00000545493 ADAMTS12P58397 1594 aa37.46■■■■□ 3.59
SCARB1-210ENST00000545493 CYB5RLQ6IPT4 315 aa37.34■■■■□ 3.57
SCARB1-210ENST00000545493 GRIN2AQ12879 1464 aa37.33■■■■□ 3.57
SCARB1-210ENST00000545493 ERICH3Q5RHP9 1530 aa37.31■■■■□ 3.56
SCARB1-210ENST00000545493 CEP170Q5SW79 1584 aa37.24■■■■□ 3.55
SCARB1-210ENST00000545493 FHAD1B1AJZ9 1412 aa37.22■■■■□ 3.55
SCARB1-210ENST00000545493 NUP160Q12769 1436 aa37.21■■■■□ 3.55
SCARB1-210ENST00000545493 ERCC6L2Q5T890 1561 aa37.07■■■■□ 3.52
SCARB1-210ENST00000545493 SHROOM2Q13796 1616 aa37.06■■■■□ 3.52
SCARB1-210ENST00000545493 RUSC2Q8N2Y8 1516 aa36.94■■■■□ 3.5
SCARB1-210ENST00000545493 KIF27Q86VH2 1401 aa36.89■■■■□ 3.5
SCARB1-210ENST00000545493 CUL7Q14999 1698 aa36.87■■■■□ 3.49
SCARB1-210ENST00000545493 IGF1RP08069 1367 aa36.81■■■■□ 3.48
SCARB1-210ENST00000545493 TRHP20396 242 aaPredicted RBP36.77■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms