RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 NISCHQ9Y2I1 1504 aa38.24■■■■□ 3.71
CCDC78-216ENST00000544996 CCDC180Q9P1Z9 1646 aa34.01■■■■□ 3.03
CCDC78-216ENST00000544996 ABCC9O60706 1549 aa33.48■■■□□ 2.95
CCDC78-216ENST00000544996 DCAF8L2P0C7V8 631 aa32.14■■■□□ 2.74
CCDC78-216ENST00000544996 RB1CC1Q8TDY2 1594 aa32.14■■■□□ 2.74
CCDC78-216ENST00000544996 NACADO15069 1562 aa32.07■■■□□ 2.72
CCDC78-216ENST00000544996 MYO15BQ96JP2 1530 aa31.82■■■□□ 2.68
CCDC78-216ENST00000544996 ZCCHC6Q5VYS8 1495 aaKnown RBP31.8■■■□□ 2.68
CCDC78-216ENST00000544996 DCAF1Q9Y4B6 1507 aa31.63■■■□□ 2.65
CCDC78-216ENST00000544996 PABPN1Q86U42 306 aaKnown RBP eCLIP31.31■■■□□ 2.6
CCDC78-216ENST00000544996 UNC13AQ9UPW8 1703 aa31.26■■■□□ 2.59
CCDC78-216ENST00000544996 BICRAQ9NZM4 1560 aa31.1■■■□□ 2.57
CCDC78-216ENST00000544996 SCRIBQ14160 1630 aa31.04■■■□□ 2.56
CCDC78-216ENST00000544996 DNAJC5BQ9UF47 199 aa30.85■■■□□ 2.53
CCDC78-216ENST00000544996 SHROOM4Q9ULL8 1493 aa30.83■■■□□ 2.53
CCDC78-216ENST00000544996 EIF4G1Q04637 1599 aaKnown RBP30.34■■■□□ 2.45
CCDC78-216ENST00000544996 CC2D2AQ9P2K1 1620 aa30.24■■■□□ 2.43
CCDC78-216ENST00000544996 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
CCDC78-216ENST00000544996 SMARCA4P51532 1647 aa29.67■■■□□ 2.34
CCDC78-216ENST00000544996 BAZ1AQ9NRL2 1556 aaPredicted RBP29.66■■■□□ 2.34
CCDC78-216ENST00000544996 NCAPD3P42695 1498 aa29.61■■■□□ 2.33
CCDC78-216ENST00000544996 ATAD2BQ9ULI0 1458 aa29.59■■■□□ 2.33
CCDC78-216ENST00000544996 SMARCA2P51531 1590 aa29.56■■■□□ 2.32
CCDC78-216ENST00000544996 MROH2BQ7Z745 1585 aa29.45■■■□□ 2.31
CCDC78-216ENST00000544996 HMGXB3Q12766 1538 aa29.41■■■□□ 2.3
CCDC78-216ENST00000544996 PEG3Q9GZU2 1588 aa29.39■■■□□ 2.29
CCDC78-216ENST00000544996 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
CCDC78-216ENST00000544996 RSF1Q96T23 1441 aaPredicted RBP29.11■■■□□ 2.25
CCDC78-216ENST00000544996 WIZO95785 1651 aa29.09■■■□□ 2.25
CCDC78-216ENST00000544996 ERCC6Q03468 1493 aa28.92■■■□□ 2.22
CCDC78-216ENST00000544996 NESP48681 1621 aa28.9■■■□□ 2.22
CCDC78-216ENST00000544996 LAMC3Q9Y6N6 1575 aa28.83■■■□□ 2.21
CCDC78-216ENST00000544996 TOP2AP11388 1531 aaKnown RBP28.81■■■□□ 2.2
CCDC78-216ENST00000544996 CADPSQ9ULU8 1353 aa28.76■■■□□ 2.2
CCDC78-216ENST00000544996 PDS5BQ9NTI5 1447 aa28.7■■■□□ 2.19
CCDC78-216ENST00000544996 CUX2O14529 1486 aa28.63■■■□□ 2.17
CCDC78-216ENST00000544996 CFTRP13569 1480 aa28.53■■■□□ 2.16
CCDC78-216ENST00000544996 CCDC88BA6NC98 1476 aa28.5■■■□□ 2.15
CCDC78-216ENST00000544996 KIF21AQ7Z4S6 1674 aa28.49■■■□□ 2.15
CCDC78-216ENST00000544996 THOC2Q8NI27 1593 aaKnown RBP28.45■■■□□ 2.15
CCDC78-216ENST00000544996 FANCD2Q9BXW9 1451 aa28.41■■■□□ 2.14
CCDC78-216ENST00000544996 CEP164Q9UPV0 1460 aa28.39■■■□□ 2.13
CCDC78-216ENST00000544996 MRC2Q9UBG0 1479 aa28.38■■■□□ 2.13
CCDC78-216ENST00000544996 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
CCDC78-216ENST00000544996 WDR62O43379 1518 aa28.25■■■□□ 2.11
CCDC78-216ENST00000544996 PRDM2Q13029 1718 aa28.18■■■□□ 2.1
CCDC78-216ENST00000544996 URB2Q14146 1524 aaKnown RBP28.1■■■□□ 2.09
CCDC78-216ENST00000544996 ABCC8Q09428 1581 aa27.96■■■□□ 2.07
CCDC78-216ENST00000544996 DNAJC5Q9H3Z4 198 aa27.96■■■□□ 2.07
CCDC78-216ENST00000544996 TOPBP1Q92547 1522 aa27.92■■■□□ 2.06
CCDC78-216ENST00000544996 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
CCDC78-216ENST00000544996 IFT140Q96RY7 1462 aa27.81■■■□□ 2.04
CCDC78-216ENST00000544996 POLA1P09884 1462 aaPredicted RBP27.67■■■□□ 2.02
CCDC78-216ENST00000544996 ZNF608Q9ULD9 1512 aaPredicted RBP27.66■■■□□ 2.02
CCDC78-216ENST00000544996 CUX1P39880 1505 aa27.64■■■□□ 2.02
CCDC78-216ENST00000544996 SOGA1O94964 1423 aa27.61■■■□□ 2.01
CCDC78-216ENST00000544996 FGD5Q6ZNL6 1462 aa27.59■■■□□ 2.01
CCDC78-216ENST00000544996 TARBP1Q13395 1621 aaKnown RBP27.58■■■□□ 2.01
CCDC78-216ENST00000544996 RAD54L2Q9Y4B4 1467 aa27.56■■■□□ 2
CCDC78-216ENST00000544996 EIF4G3O43432 1585 aaKnown RBP27.52■■■□□ 2
CCDC78-216ENST00000544996 AQRO60306 1485 aaKnown RBP eCLIP27.51■■■□□ 2
CCDC78-216ENST00000544996 OSCARQ8IYS5 282 aa27.49■■□□□ 1.99
CCDC78-216ENST00000544996 WRNQ14191 1432 aaPredicted RBP eCLIP27.47■■□□□ 1.99
CCDC78-216ENST00000544996 TDRD9Q8NDG6 1382 aaKnown RBP27.47■■□□□ 1.99
CCDC78-216ENST00000544996 WDR97A6NE52 1622 aa27.38■■□□□ 1.97
CCDC78-216ENST00000544996 TOP2BQ02880 1626 aa27.36■■□□□ 1.97
CCDC78-216ENST00000544996 SYNJ1O43426 1573 aa27.33■■□□□ 1.97
CCDC78-216ENST00000544996 BIVM-ERCC5R4GMW8 1640 aa27.32■■□□□ 1.96
CCDC78-216ENST00000544996 ABCA10Q8WWZ4 1543 aa27.31■■□□□ 1.96
CCDC78-216ENST00000544996 FBLN2P98095 1184 aa27.3■■□□□ 1.96
CCDC78-216ENST00000544996 GRIN2BQ13224 1484 aa27.29■■□□□ 1.96
CCDC78-216ENST00000544996 GAPVD1Q14C86 1478 aa27.27■■□□□ 1.96
CCDC78-216ENST00000544996 SNAPC4Q5SXM2 1469 aa27.24■■□□□ 1.95
CCDC78-216ENST00000544996 MAGI1Q96QZ7 1491 aaPredicted RBP27.22■■□□□ 1.95
CCDC78-216ENST00000544996 CHMP7Q8WUX9 453 aaPredicted RBP27.2■■□□□ 1.94
CCDC78-216ENST00000544996 ABCA5Q8WWZ7 1642 aa27.16■■□□□ 1.94
CCDC78-216ENST00000544996 CHD1O14646 1710 aa27.15■■□□□ 1.94
CCDC78-216ENST00000544996 SYNJ2O15056 1496 aa27.13■■□□□ 1.93
CCDC78-216ENST00000544996 PBRM1Q86U86 1689 aa27.11■■□□□ 1.93
CCDC78-216ENST00000544996 TRIM41Q8WV44 630 aa27.01■■□□□ 1.91
CCDC78-216ENST00000544996 ERICH3Q5RHP9 1530 aa26.99■■□□□ 1.91
CCDC78-216ENST00000544996 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
CCDC78-216ENST00000544996 ARHGEF11O15085 1522 aa26.95■■□□□ 1.91
CCDC78-216ENST00000544996 ADAMTS12P58397 1594 aa26.93■■□□□ 1.9
CCDC78-216ENST00000544996 KIF27Q86VH2 1401 aa26.93■■□□□ 1.9
CCDC78-216ENST00000544996 RIMBP3CA6NJZ7 1639 aa26.93■■□□□ 1.9
CCDC78-216ENST00000544996 RIMBP3BA6NNM3 1639 aa26.93■■□□□ 1.9
CCDC78-216ENST00000544996 RIMBP3Q9UFD9 1639 aa26.93■■□□□ 1.9
CCDC78-216ENST00000544996 GRIN2AQ12879 1464 aa26.92■■□□□ 1.9
CCDC78-216ENST00000544996 CLASP1Q7Z460 1538 aa26.9■■□□□ 1.9
CCDC78-216ENST00000544996 IGF1RP08069 1367 aa26.82■■□□□ 1.88
CCDC78-216ENST00000544996 CYB5RLQ6IPT4 315 aa26.8■■□□□ 1.88
CCDC78-216ENST00000544996 NUP160Q12769 1436 aa26.8■■□□□ 1.88
CCDC78-216ENST00000544996 CEP170Q5SW79 1584 aa26.74■■□□□ 1.87
CCDC78-216ENST00000544996 ARAP1Q96P48 1450 aa26.72■■□□□ 1.87
CCDC78-216ENST00000544996 CUL7Q14999 1698 aa26.69■■□□□ 1.86
CCDC78-216ENST00000544996 CARMIL1Q5VZK9 1371 aa26.67■■□□□ 1.86
CCDC78-216ENST00000544996 JPH4Q96JJ6 628 aa26.59■■□□□ 1.85
CCDC78-216ENST00000544996 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
CCDC78-216ENST00000544996 SHROOM2Q13796 1616 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms