RNA–Protein interactions for RNA: ENST00000544972.1

TNC-213, Transcript of tenascin C, humanhuman

TSL 5

Gene TNC, Length 1,844 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNC-213ENST00000544972 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
TNC-213ENST00000544972 CCDC180Q9P1Z9 1646 aa22.68■■□□□ 1.22
TNC-213ENST00000544972 ZCCHC6Q5VYS8 1495 aaKnown RBP21.83■■□□□ 1.09
TNC-213ENST00000544972 ABCC9O60706 1549 aa21.5■■□□□ 1.03
TNC-213ENST00000544972 DCAF1Q9Y4B6 1507 aa21.49■■□□□ 1.03
TNC-213ENST00000544972 DCAF8L2P0C7V8 631 aa21.44■■□□□ 1.02
TNC-213ENST00000544972 MYO15BQ96JP2 1530 aa21.26■□□□□ 0.99
TNC-213ENST00000544972 SHROOM4Q9ULL8 1493 aa21.14■□□□□ 0.98
TNC-213ENST00000544972 NACADO15069 1562 aa21.13■□□□□ 0.97
TNC-213ENST00000544972 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
TNC-213ENST00000544972 SCRIBQ14160 1630 aa20.85■□□□□ 0.93
TNC-213ENST00000544972 UNC13AQ9UPW8 1703 aa20.59■□□□□ 0.89
TNC-213ENST00000544972 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
TNC-213ENST00000544972 SUPT5HO00267 1087 aaKnown RBP20.3■□□□□ 0.84
TNC-213ENST00000544972 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.84
TNC-213ENST00000544972 CECR2Q9BXF3 1484 aa20.22■□□□□ 0.83
TNC-213ENST00000544972 RSF1Q96T23 1441 aaPredicted RBP20.15■□□□□ 0.82
TNC-213ENST00000544972 MROH2BQ7Z745 1585 aa20.09■□□□□ 0.81
TNC-213ENST00000544972 BAZ1AQ9NRL2 1556 aaPredicted RBP20.06■□□□□ 0.8
TNC-213ENST00000544972 SMARCA4P51532 1647 aa19.99■□□□□ 0.79
TNC-213ENST00000544972 WIZO95785 1651 aa19.93■□□□□ 0.78
TNC-213ENST00000544972 PEG3Q9GZU2 1588 aa19.77■□□□□ 0.75
TNC-213ENST00000544972 EIF4G1Q04637 1599 aaKnown RBP19.74■□□□□ 0.75
TNC-213ENST00000544972 TOP2AP11388 1531 aaKnown RBP19.7■□□□□ 0.74
TNC-213ENST00000544972 ATAD2BQ9ULI0 1458 aa19.69■□□□□ 0.74
TNC-213ENST00000544972 SMARCA2P51531 1590 aa19.64■□□□□ 0.73
TNC-213ENST00000544972 BAZ1BQ9UIG0 1483 aaKnown RBP19.54■□□□□ 0.72
TNC-213ENST00000544972 NCAPD3P42695 1498 aa19.52■□□□□ 0.72
TNC-213ENST00000544972 CCDC88BA6NC98 1476 aa19.51■□□□□ 0.71
TNC-213ENST00000544972 HMGXB3Q12766 1538 aa19.48■□□□□ 0.71
TNC-213ENST00000544972 CC2D2AQ9P2K1 1620 aa19.47■□□□□ 0.71
TNC-213ENST00000544972 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
TNC-213ENST00000544972 TRIM41Q8WV44 630 aa19.09■□□□□ 0.65
TNC-213ENST00000544972 CFTRP13569 1480 aa19.08■□□□□ 0.64
TNC-213ENST00000544972 ABCC8Q09428 1581 aa19.08■□□□□ 0.64
TNC-213ENST00000544972 DNAJC5BQ9UF47 199 aa19.06■□□□□ 0.64
TNC-213ENST00000544972 CADPSQ9ULU8 1353 aa19.01■□□□□ 0.63
TNC-213ENST00000544972 PRDM2Q13029 1718 aa18.97■□□□□ 0.63
TNC-213ENST00000544972 WRNQ14191 1432 aaPredicted RBP eCLIP18.95■□□□□ 0.62
TNC-213ENST00000544972 SYNJ1O43426 1573 aa18.9■□□□□ 0.62
TNC-213ENST00000544972 NESP48681 1621 aa18.88■□□□□ 0.61
TNC-213ENST00000544972 LAMC3Q9Y6N6 1575 aa18.85■□□□□ 0.61
TNC-213ENST00000544972 TOP2BQ02880 1626 aa18.81■□□□□ 0.6
TNC-213ENST00000544972 BIVM-ERCC5R4GMW8 1640 aa18.8■□□□□ 0.6
TNC-213ENST00000544972 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
TNC-213ENST00000544972 CUX1P39880 1505 aa18.78■□□□□ 0.6
TNC-213ENST00000544972 FAM9AQ8IZU1 332 aaPredicted RBP18.74■□□□□ 0.59
TNC-213ENST00000544972 SOGA1O94964 1423 aa18.72■□□□□ 0.59
TNC-213ENST00000544972 PDS5BQ9NTI5 1447 aa18.69■□□□□ 0.58
TNC-213ENST00000544972 LOC105371045A0A1W2PR82 267 aa18.69■□□□□ 0.58
TNC-213ENST00000544972 CEP164Q9UPV0 1460 aa18.67■□□□□ 0.58
TNC-213ENST00000544972 RUSC2Q8N2Y8 1516 aa18.66■□□□□ 0.58
TNC-213ENST00000544972 KIF21AQ7Z4S6 1674 aa18.64■□□□□ 0.58
TNC-213ENST00000544972 EEA1Q15075 1411 aa18.62■□□□□ 0.57
TNC-213ENST00000544972 DNMBPQ6XZF7 1577 aa18.61■□□□□ 0.57
TNC-213ENST00000544972 TOPBP1Q92547 1522 aa18.6■□□□□ 0.57
TNC-213ENST00000544972 URB2Q14146 1524 aaKnown RBP18.58■□□□□ 0.56
TNC-213ENST00000544972 FGD5Q6ZNL6 1462 aa18.58■□□□□ 0.56
TNC-213ENST00000544972 CSRNP3Q8WYN3 585 aa18.54■□□□□ 0.56
TNC-213ENST00000544972 POLA1P09884 1462 aaPredicted RBP18.5■□□□□ 0.55
TNC-213ENST00000544972 EHMT2Q96KQ7 1210 aa18.47■□□□□ 0.55
TNC-213ENST00000544972 MRC2Q9UBG0 1479 aa18.47■□□□□ 0.55
TNC-213ENST00000544972 KIF27Q86VH2 1401 aa18.46■□□□□ 0.55
TNC-213ENST00000544972 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
TNC-213ENST00000544972 CUX2O14529 1486 aa18.43■□□□□ 0.54
TNC-213ENST00000544972 ABCA10Q8WWZ4 1543 aa18.42■□□□□ 0.54
TNC-213ENST00000544972 KIF21BO75037 1637 aa18.41■□□□□ 0.54
TNC-213ENST00000544972 ERCC6Q03468 1493 aa18.41■□□□□ 0.54
TNC-213ENST00000544972 WDR62O43379 1518 aa18.39■□□□□ 0.54
TNC-213ENST00000544972 WDR97A6NE52 1622 aa18.37■□□□□ 0.53
TNC-213ENST00000544972 GOLGA3Q08378 1498 aa18.36■□□□□ 0.53
TNC-213ENST00000544972 THOC2Q8NI27 1593 aaKnown RBP18.36■□□□□ 0.53
TNC-213ENST00000544972 PRXQ9BXM0 1461 aa18.35■□□□□ 0.53
TNC-213ENST00000544972 TARBP1Q13395 1621 aaKnown RBP18.34■□□□□ 0.53
TNC-213ENST00000544972 IGF1RP08069 1367 aa18.33■□□□□ 0.53
TNC-213ENST00000544972 RAPGEF2Q9Y4G8 1499 aa18.33■□□□□ 0.52
TNC-213ENST00000544972 TNIKQ9UKE5 1360 aa18.31■□□□□ 0.52
TNC-213ENST00000544972 ERICH3Q5RHP9 1530 aa18.29■□□□□ 0.52
TNC-213ENST00000544972 ABCA5Q8WWZ7 1642 aa18.28■□□□□ 0.52
TNC-213ENST00000544972 UBTFP17480 764 aaKnown RBP18.28■□□□□ 0.52
TNC-213ENST00000544972 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
TNC-213ENST00000544972 GAPVD1Q14C86 1478 aa18.23■□□□□ 0.51
TNC-213ENST00000544972 IFT140Q96RY7 1462 aa18.23■□□□□ 0.51
TNC-213ENST00000544972 CARMIL1Q5VZK9 1371 aa18.22■□□□□ 0.51
TNC-213ENST00000544972 CEP162Q5TB80 1403 aa18.21■□□□□ 0.51
TNC-213ENST00000544972 CUL7Q14999 1698 aa18.17■□□□□ 0.5
TNC-213ENST00000544972 ZNF608Q9ULD9 1512 aaPredicted RBP18.17■□□□□ 0.5
TNC-213ENST00000544972 AQRO60306 1485 aaKnown RBP eCLIP18.17■□□□□ 0.5
TNC-213ENST00000544972 PBRM1Q86U86 1689 aa18.13■□□□□ 0.49
TNC-213ENST00000544972 EIF4G3O43432 1585 aaKnown RBP18.09■□□□□ 0.49
TNC-213ENST00000544972 GRIN2BQ13224 1484 aa18.08■□□□□ 0.48
TNC-213ENST00000544972 CLIP1P30622 1438 aa18.08■□□□□ 0.48
TNC-213ENST00000544972 ADAMTS12P58397 1594 aa18.03■□□□□ 0.48
TNC-213ENST00000544972 FHAD1B1AJZ9 1412 aa18.02■□□□□ 0.48
TNC-213ENST00000544972 RANGAP1P46060 587 aaPredicted RBP18■□□□□ 0.47
TNC-213ENST00000544972 SNAPC4Q5SXM2 1469 aa17.98■□□□□ 0.47
TNC-213ENST00000544972 CTTNBP2Q8WZ74 1663 aa17.97■□□□□ 0.47
TNC-213ENST00000544972 ARHGAP35Q9NRY4 1499 aa17.94■□□□□ 0.46
TNC-213ENST00000544972 ARAP1Q96P48 1450 aa17.94■□□□□ 0.46
TNC-213ENST00000544972 MAGI1Q96QZ7 1491 aaPredicted RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms