RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NISCHQ9Y2I1 1504 aa12.08□□□□□ -0.48
USP28-213ENST00000544967 CCDC180Q9P1Z9 1646 aa10.95□□□□□ -0.66
USP28-213ENST00000544967 MYO15BQ96JP2 1530 aa10.27□□□□□ -0.77
USP28-213ENST00000544967 DCAF1Q9Y4B6 1507 aa10.23□□□□□ -0.77
USP28-213ENST00000544967 ZCCHC6Q5VYS8 1495 aaKnown RBP10.16□□□□□ -0.78
USP28-213ENST00000544967 NACADO15069 1562 aa10.12□□□□□ -0.79
USP28-213ENST00000544967 ABCC9O60706 1549 aa10.09□□□□□ -0.79
USP28-213ENST00000544967 RB1CC1Q8TDY2 1594 aa10.04□□□□□ -0.8
USP28-213ENST00000544967 UNC13AQ9UPW8 1703 aa9.97□□□□□ -0.81
USP28-213ENST00000544967 SHROOM4Q9ULL8 1493 aa9.88□□□□□ -0.83
USP28-213ENST00000544967 BICRAQ9NZM4 1560 aa9.8□□□□□ -0.84
USP28-213ENST00000544967 SCRIBQ14160 1630 aa9.64□□□□□ -0.87
USP28-213ENST00000544967 SLC24A1O60721 1099 aa9.59□□□□□ -0.87
USP28-213ENST00000544967 PEG3Q9GZU2 1588 aa9.47□□□□□ -0.89
USP28-213ENST00000544967 EIF4G1Q04637 1599 aaKnown RBP9.45□□□□□ -0.9
USP28-213ENST00000544967 SMARCA4P51532 1647 aa9.4□□□□□ -0.91
USP28-213ENST00000544967 BAZ1AQ9NRL2 1556 aaPredicted RBP9.37□□□□□ -0.91
USP28-213ENST00000544967 CC2D2AQ9P2K1 1620 aa9.35□□□□□ -0.91
USP28-213ENST00000544967 HMGXB3Q12766 1538 aa9.34□□□□□ -0.91
USP28-213ENST00000544967 SMARCA2P51531 1590 aa9.33□□□□□ -0.92
USP28-213ENST00000544967 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
USP28-213ENST00000544967 NCAPD3P42695 1498 aa9.27□□□□□ -0.92
USP28-213ENST00000544967 PABPN1Q86U42 306 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP28-213ENST00000544967 CECR2Q9BXF3 1484 aa9.25□□□□□ -0.93
USP28-213ENST00000544967 MROH2BQ7Z745 1585 aa9.23□□□□□ -0.93
USP28-213ENST00000544967 ATAD2BQ9ULI0 1458 aa9.23□□□□□ -0.93
USP28-213ENST00000544967 PRDM2Q13029 1718 aa9.17□□□□□ -0.94
USP28-213ENST00000544967 TOP2AP11388 1531 aaKnown RBP9.17□□□□□ -0.94
USP28-213ENST00000544967 WIZO95785 1651 aa9.16□□□□□ -0.94
USP28-213ENST00000544967 RSF1Q96T23 1441 aaPredicted RBP9.14□□□□□ -0.95
USP28-213ENST00000544967 DNAJC5BQ9UF47 199 aa9.12□□□□□ -0.95
USP28-213ENST00000544967 BAZ1BQ9UIG0 1483 aaKnown RBP9.08□□□□□ -0.96
USP28-213ENST00000544967 LAMC3Q9Y6N6 1575 aa9.06□□□□□ -0.96
USP28-213ENST00000544967 CFTRP13569 1480 aa8.96□□□□□ -0.98
USP28-213ENST00000544967 THOC2Q8NI27 1593 aaKnown RBP8.96□□□□□ -0.98
USP28-213ENST00000544967 KIF21AQ7Z4S6 1674 aa8.93□□□□□ -0.98
USP28-213ENST00000544967 PELP1Q8IZL8 1130 aaKnown RBP8.93□□□□□ -0.98
USP28-213ENST00000544967 CCDC88BA6NC98 1476 aa8.92□□□□□ -0.98
USP28-213ENST00000544967 WDR62O43379 1518 aa8.88□□□□□ -0.99
USP28-213ENST00000544967 CADPSQ9ULU8 1353 aa8.87□□□□□ -0.99
USP28-213ENST00000544967 WDR97A6NE52 1622 aa8.83□□□□□ -1
USP28-213ENST00000544967 CUX2O14529 1486 aa8.83□□□□□ -1
USP28-213ENST00000544967 CHIC1Q5VXU3 224 aa8.83□□□□□ -1
USP28-213ENST00000544967 NESP48681 1621 aa8.82□□□□□ -1
USP28-213ENST00000544967 BIVM-ERCC5R4GMW8 1640 aa8.81□□□□□ -1
USP28-213ENST00000544967 PDS5BQ9NTI5 1447 aa8.8□□□□□ -1
USP28-213ENST00000544967 MRC2Q9UBG0 1479 aa8.79□□□□□ -1
USP28-213ENST00000544967 DNMBPQ6XZF7 1577 aa8.78□□□□□ -1
USP28-213ENST00000544967 FANCD2Q9BXW9 1451 aa8.77□□□□□ -1.01
USP28-213ENST00000544967 ABCC8Q09428 1581 aa8.77□□□□□ -1.01
USP28-213ENST00000544967 HRCP23327 699 aa8.77□□□□□ -1.01
USP28-213ENST00000544967 CEP164Q9UPV0 1460 aa8.76□□□□□ -1.01
USP28-213ENST00000544967 DAXXQ9UER7 740 aaPredicted RBP8.76□□□□□ -1.01
USP28-213ENST00000544967 MYT1Q01538 1121 aa8.74□□□□□ -1.01
USP28-213ENST00000544967 URB2Q14146 1524 aaKnown RBP8.74□□□□□ -1.01
USP28-213ENST00000544967 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
USP28-213ENST00000544967 TOP2BQ02880 1626 aa8.73□□□□□ -1.01
USP28-213ENST00000544967 EHMT2Q96KQ7 1210 aa8.72□□□□□ -1.01
USP28-213ENST00000544967 TOPBP1Q92547 1522 aa8.7□□□□□ -1.02
USP28-213ENST00000544967 CUX1P39880 1505 aa8.69□□□□□ -1.02
USP28-213ENST00000544967 ABCA5Q8WWZ7 1642 aa8.67□□□□□ -1.02
USP28-213ENST00000544967 ERCC6Q03468 1493 aa8.66□□□□□ -1.02
USP28-213ENST00000544967 PLPPR3Q6T4P5 718 aa8.66□□□□□ -1.02
USP28-213ENST00000544967 SYNJ1O43426 1573 aa8.66□□□□□ -1.02
USP28-213ENST00000544967 IFT140Q96RY7 1462 aa8.64□□□□□ -1.03
USP28-213ENST00000544967 PBRM1Q86U86 1689 aa8.62□□□□□ -1.03
USP28-213ENST00000544967 POLA1P09884 1462 aaPredicted RBP8.61□□□□□ -1.03
USP28-213ENST00000544967 ABCA10Q8WWZ4 1543 aa8.61□□□□□ -1.03
USP28-213ENST00000544967 PRKCSHP14314 528 aaPredicted RBP8.61□□□□□ -1.03
USP28-213ENST00000544967 EIF4G3O43432 1585 aaKnown RBP8.61□□□□□ -1.03
USP28-213ENST00000544967 FGD5Q6ZNL6 1462 aa8.57□□□□□ -1.04
USP28-213ENST00000544967 RTN4Q9NQC3 1192 aaKnown RBP8.56□□□□□ -1.04
USP28-213ENST00000544967 WRNQ14191 1432 aaPredicted RBP eCLIP8.56□□□□□ -1.04
USP28-213ENST00000544967 ERICH3Q5RHP9 1530 aa8.54□□□□□ -1.04
USP28-213ENST00000544967 APLP2Q06481 763 aa8.54□□□□□ -1.04
USP28-213ENST00000544967 CUL7Q14999 1698 aa8.53□□□□□ -1.04
USP28-213ENST00000544967 ADAMTS12P58397 1594 aa8.52□□□□□ -1.05
USP28-213ENST00000544967 TTBK1Q5TCY1 1321 aaPredicted RBP8.52□□□□□ -1.05
USP28-213ENST00000544967 MAGI1Q96QZ7 1491 aaPredicted RBP8.5□□□□□ -1.05
USP28-213ENST00000544967 NCBP3Q53F19 620 aaKnown RBP8.5□□□□□ -1.05
USP28-213ENST00000544967 CHD1O14646 1710 aa8.49□□□□□ -1.05
USP28-213ENST00000544967 SUPT5HO00267 1087 aaKnown RBP8.49□□□□□ -1.05
USP28-213ENST00000544967 ZNF608Q9ULD9 1512 aaPredicted RBP8.48□□□□□ -1.05
USP28-213ENST00000544967 CLASP1Q7Z460 1538 aa8.47□□□□□ -1.05
USP28-213ENST00000544967 SHROOM2Q13796 1616 aa8.47□□□□□ -1.05
USP28-213ENST00000544967 SOGA1O94964 1423 aa8.46□□□□□ -1.06
USP28-213ENST00000544967 GRIN2BQ13224 1484 aa8.46□□□□□ -1.06
USP28-213ENST00000544967 RAD54L2Q9Y4B4 1467 aa8.45□□□□□ -1.06
USP28-213ENST00000544967 GAPVD1Q14C86 1478 aa8.43□□□□□ -1.06
USP28-213ENST00000544967 SYNJ2O15056 1496 aa8.42□□□□□ -1.06
USP28-213ENST00000544967 RUSC2Q8N2Y8 1516 aa8.41□□□□□ -1.06
USP28-213ENST00000544967 KIF21BO75037 1637 aa8.4□□□□□ -1.07
USP28-213ENST00000544967 CTTNBP2Q8WZ74 1663 aa8.4□□□□□ -1.07
USP28-213ENST00000544967 NUP160Q12769 1436 aa8.39□□□□□ -1.07
USP28-213ENST00000544967 EEA1Q15075 1411 aa8.39□□□□□ -1.07
USP28-213ENST00000544967 SNAPC4Q5SXM2 1469 aa8.39□□□□□ -1.07
USP28-213ENST00000544967 CEP170Q5SW79 1584 aa8.38□□□□□ -1.07
USP28-213ENST00000544967 FHAD1B1AJZ9 1412 aa8.38□□□□□ -1.07
USP28-213ENST00000544967 ZEB1P37275 1124 aaPredicted RBP8.38□□□□□ -1.07
USP28-213ENST00000544967 AQRO60306 1485 aaKnown RBP eCLIP8.37□□□□□ -1.073e-6■■■■□ 20.6
Retrieved 100 of 20,778 RNA–protein pairs in 167.6 ms