RNA–Protein interactions for RNA: ENST00000544964.6

ACTN1-206, Transcript of actinin alpha 1, humanhuman

TSL 5

Gene ACTN1, Length 891 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-206ENST00000544964 NISCHQ9Y2I1 1504 aa31.21■■■□□ 2.59
ACTN1-206ENST00000544964 CCDC180Q9P1Z9 1646 aa28.07■■■□□ 2.08
ACTN1-206ENST00000544964 ABCC9O60706 1549 aa27.92■■■□□ 2.06
ACTN1-206ENST00000544964 RB1CC1Q8TDY2 1594 aa26.63■■□□□ 1.85
ACTN1-206ENST00000544964 NACADO15069 1562 aa26.46■■□□□ 1.83
ACTN1-206ENST00000544964 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.78
ACTN1-206ENST00000544964 MYO15BQ96JP2 1530 aa26.14■■□□□ 1.77
ACTN1-206ENST00000544964 DNAJC5BQ9UF47 199 aa26.13■■□□□ 1.77
ACTN1-206ENST00000544964 DCAF8L2P0C7V8 631 aa26.09■■□□□ 1.77
ACTN1-206ENST00000544964 ZCCHC6Q5VYS8 1495 aaKnown RBP25.92■■□□□ 1.74
ACTN1-206ENST00000544964 BICRAQ9NZM4 1560 aa25.92■■□□□ 1.74
ACTN1-206ENST00000544964 PABPN1Q86U42 306 aaKnown RBP eCLIP25.92■■□□□ 1.74
ACTN1-206ENST00000544964 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
ACTN1-206ENST00000544964 SHROOM4Q9ULL8 1493 aa25.54■■□□□ 1.68
ACTN1-206ENST00000544964 SCRIBQ14160 1630 aa25.53■■□□□ 1.68
ACTN1-206ENST00000544964 CC2D2AQ9P2K1 1620 aa25.28■■□□□ 1.64
ACTN1-206ENST00000544964 EIF4G1Q04637 1599 aaKnown RBP25.24■■□□□ 1.63
ACTN1-206ENST00000544964 CECR2Q9BXF3 1484 aa25.15■■□□□ 1.62
ACTN1-206ENST00000544964 NCAPD3P42695 1498 aa24.4■■□□□ 1.5
ACTN1-206ENST00000544964 SMARCA4P51532 1647 aa24.38■■□□□ 1.49
ACTN1-206ENST00000544964 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
ACTN1-206ENST00000544964 HMGXB3Q12766 1538 aa24.29■■□□□ 1.48
ACTN1-206ENST00000544964 SMARCA2P51531 1590 aa24.29■■□□□ 1.48
ACTN1-206ENST00000544964 BAZ1AQ9NRL2 1556 aaPredicted RBP24.22■■□□□ 1.47
ACTN1-206ENST00000544964 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
ACTN1-206ENST00000544964 BAZ1BQ9UIG0 1483 aaKnown RBP24.1■■□□□ 1.45
ACTN1-206ENST00000544964 CUX2O14529 1486 aa24.07■■□□□ 1.44
ACTN1-206ENST00000544964 ERCC6Q03468 1493 aa24.07■■□□□ 1.44
ACTN1-206ENST00000544964 MROH2BQ7Z745 1585 aa24.06■■□□□ 1.44
ACTN1-206ENST00000544964 NESP48681 1621 aa24.03■■□□□ 1.44
ACTN1-206ENST00000544964 DNAJC5Q9H3Z4 198 aa23.92■■□□□ 1.42
ACTN1-206ENST00000544964 LAMC3Q9Y6N6 1575 aa23.87■■□□□ 1.41
ACTN1-206ENST00000544964 THOC2Q8NI27 1593 aaKnown RBP23.86■■□□□ 1.41
ACTN1-206ENST00000544964 WIZO95785 1651 aa23.79■■□□□ 1.4
ACTN1-206ENST00000544964 KIF21AQ7Z4S6 1674 aa23.78■■□□□ 1.4
ACTN1-206ENST00000544964 PDS5BQ9NTI5 1447 aa23.65■■□□□ 1.38
ACTN1-206ENST00000544964 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
ACTN1-206ENST00000544964 RSF1Q96T23 1441 aaPredicted RBP23.54■■□□□ 1.36
ACTN1-206ENST00000544964 MRC2Q9UBG0 1479 aa23.51■■□□□ 1.35
ACTN1-206ENST00000544964 WDR62O43379 1518 aa23.5■■□□□ 1.35
ACTN1-206ENST00000544964 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
ACTN1-206ENST00000544964 CFTRP13569 1480 aa23.42■■□□□ 1.34
ACTN1-206ENST00000544964 CEP164Q9UPV0 1460 aa23.42■■□□□ 1.34
ACTN1-206ENST00000544964 FANCD2Q9BXW9 1451 aa23.39■■□□□ 1.34
ACTN1-206ENST00000544964 PRDM2Q13029 1718 aa23.3■■□□□ 1.32
ACTN1-206ENST00000544964 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
ACTN1-206ENST00000544964 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
ACTN1-206ENST00000544964 TOPBP1Q92547 1522 aa22.98■■□□□ 1.27
ACTN1-206ENST00000544964 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
ACTN1-206ENST00000544964 ZNF608Q9ULD9 1512 aaPredicted RBP22.93■■□□□ 1.26
ACTN1-206ENST00000544964 DNMBPQ6XZF7 1577 aa22.91■■□□□ 1.26
ACTN1-206ENST00000544964 ABCC8Q09428 1581 aa22.87■■□□□ 1.25
ACTN1-206ENST00000544964 EIF4G3O43432 1585 aaKnown RBP22.86■■□□□ 1.25
ACTN1-206ENST00000544964 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
ACTN1-206ENST00000544964 OSCARQ8IYS5 282 aa22.83■■□□□ 1.25
ACTN1-206ENST00000544964 TARBP1Q13395 1621 aaKnown RBP22.82■■□□□ 1.24
ACTN1-206ENST00000544964 POLA1P09884 1462 aaPredicted RBP22.75■■□□□ 1.23
ACTN1-206ENST00000544964 RIMBP3CA6NJZ7 1639 aa22.71■■□□□ 1.23
ACTN1-206ENST00000544964 RIMBP3BA6NNM3 1639 aa22.71■■□□□ 1.23
ACTN1-206ENST00000544964 RIMBP3Q9UFD9 1639 aa22.71■■□□□ 1.23
ACTN1-206ENST00000544964 CHD1O14646 1710 aa22.68■■□□□ 1.22
ACTN1-206ENST00000544964 AQRO60306 1485 aaKnown RBP eCLIP22.67■■□□□ 1.227e-7■■■■□ 19.4
ACTN1-206ENST00000544964 ARHGEF11O15085 1522 aa22.63■■□□□ 1.21
ACTN1-206ENST00000544964 RAD54L2Q9Y4B4 1467 aa22.63■■□□□ 1.21
ACTN1-206ENST00000544964 CUX1P39880 1505 aa22.62■■□□□ 1.21
ACTN1-206ENST00000544964 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
ACTN1-206ENST00000544964 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
ACTN1-206ENST00000544964 SOGA1O94964 1423 aa22.57■■□□□ 1.2
ACTN1-206ENST00000544964 TDRD9Q8NDG6 1382 aaKnown RBP22.52■■□□□ 1.2
ACTN1-206ENST00000544964 SNAPC4Q5SXM2 1469 aa22.49■■□□□ 1.19
ACTN1-206ENST00000544964 MAGI1Q96QZ7 1491 aaPredicted RBP22.43■■□□□ 1.18
ACTN1-206ENST00000544964 CLASP1Q7Z460 1538 aa22.42■■□□□ 1.18
ACTN1-206ENST00000544964 ARAP1Q96P48 1450 aa22.42■■□□□ 1.18
ACTN1-206ENST00000544964 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
ACTN1-206ENST00000544964 GRIN2BQ13224 1484 aa22.41■■□□□ 1.18
ACTN1-206ENST00000544964 FBLN2P98095 1184 aa22.4■■□□□ 1.18
ACTN1-206ENST00000544964 ABCA5Q8WWZ7 1642 aa22.39■■□□□ 1.17
ACTN1-206ENST00000544964 SUPT5HO00267 1087 aaKnown RBP22.38■■□□□ 1.17
ACTN1-206ENST00000544964 ABCA10Q8WWZ4 1543 aa22.36■■□□□ 1.17
ACTN1-206ENST00000544964 SYNJ1O43426 1573 aa22.35■■□□□ 1.17
ACTN1-206ENST00000544964 SYNJ2O15056 1496 aa22.34■■□□□ 1.17
ACTN1-206ENST00000544964 GAPVD1Q14C86 1478 aa22.33■■□□□ 1.16
ACTN1-206ENST00000544964 CYB5RLQ6IPT4 315 aa22.31■■□□□ 1.16
ACTN1-206ENST00000544964 BIVM-ERCC5R4GMW8 1640 aa22.3■■□□□ 1.16
ACTN1-206ENST00000544964 TOP2BQ02880 1626 aa22.27■■□□□ 1.16
ACTN1-206ENST00000544964 CHMP7Q8WUX9 453 aaPredicted RBP22.26■■□□□ 1.15
ACTN1-206ENST00000544964 WRNQ14191 1432 aaPredicted RBP eCLIP22.21■■□□□ 1.15
ACTN1-206ENST00000544964 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
ACTN1-206ENST00000544964 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
ACTN1-206ENST00000544964 CEP170Q5SW79 1584 aa22.12■■□□□ 1.13
ACTN1-206ENST00000544964 NUP160Q12769 1436 aa22.08■■□□□ 1.13
ACTN1-206ENST00000544964 ERICH3Q5RHP9 1530 aa22.07■■□□□ 1.12
ACTN1-206ENST00000544964 ERCC6L2Q5T890 1561 aa22.07■■□□□ 1.12
ACTN1-206ENST00000544964 FHAD1B1AJZ9 1412 aa22.05■■□□□ 1.12
ACTN1-206ENST00000544964 SHROOM2Q13796 1616 aa22.04■■□□□ 1.12
ACTN1-206ENST00000544964 TRHP20396 242 aaPredicted RBP22■■□□□ 1.11
ACTN1-206ENST00000544964 RUSC2Q8N2Y8 1516 aa21.9■■□□□ 1.1
ACTN1-206ENST00000544964 PRG4Q92954 1404 aaPredicted RBP21.8■■□□□ 1.08
ACTN1-206ENST00000544964 CUL7Q14999 1698 aa21.79■■□□□ 1.08
ACTN1-206ENST00000544964 KIF27Q86VH2 1401 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms