RNA–Protein interactions for RNA: ENST00000544882.1

SCNN1A-222, Transcript of sodium channel epithelial 1 alpha subunit, human

TSL 3

Gene SCNN1A, Length 585 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCNN1A-222	ENST00000544882	NISCH	Q9Y2I1	1504 aa		40.15	■■■■■ 4.02
SCNN1A-222	ENST00000544882	CCDC180	Q9P1Z9	1646 aa		35.86	■■■■□ 3.33
SCNN1A-222	ENST00000544882	ABCC9	O60706	1549 aa		35.54	■■■■□ 3.28
SCNN1A-222	ENST00000544882	RB1CC1	Q8TDY2	1594 aa		33.98	■■■■□ 3.03
SCNN1A-222	ENST00000544882	NACAD	O15069	1562 aa		33.83	■■■■□ 3.01
SCNN1A-222	ENST00000544882	DCAF8L2	P0C7V8	631 aa		33.79	■■■■□ 3
SCNN1A-222	ENST00000544882	MYO15B	Q96JP2	1530 aa		33.46	■■■□□ 2.95
SCNN1A-222	ENST00000544882	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.34	■■■□□ 2.93
SCNN1A-222	ENST00000544882	UNC13A	Q9UPW8	1703 aa		33.22	■■■□□ 2.91
SCNN1A-222	ENST00000544882	DCAF1	Q9Y4B6	1507 aa		33.17	■■■□□ 2.9
SCNN1A-222	ENST00000544882	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.16	■■■□□ 2.9
SCNN1A-222	ENST00000544882	DNAJC5B	Q9UF47	199 aa		33.02	■■■□□ 2.88
SCNN1A-222	ENST00000544882	BICRA	Q9NZM4	1560 aa		32.97	■■■□□ 2.87
SCNN1A-222	ENST00000544882	SCRIB	Q14160	1630 aa		32.73	■■■□□ 2.83
SCNN1A-222	ENST00000544882	SHROOM4	Q9ULL8	1493 aa		32.54	■■■□□ 2.8
SCNN1A-222	ENST00000544882	EIF4G1	Q04637	1599 aa	Known RBP	32.13	■■■□□ 2.73
SCNN1A-222	ENST00000544882	CC2D2A	Q9P2K1	1620 aa		32.11	■■■□□ 2.73
SCNN1A-222	ENST00000544882	CECR2	Q9BXF3	1484 aa		31.97	■■■□□ 2.71
SCNN1A-222	ENST00000544882	SMARCA4	P51532	1647 aa		31.24	■■■□□ 2.59
SCNN1A-222	ENST00000544882	NCAPD3	P42695	1498 aa		31.22	■■■□□ 2.59
SCNN1A-222	ENST00000544882	ATAD2B	Q9ULI0	1458 aa		31.19	■■■□□ 2.58
SCNN1A-222	ENST00000544882	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.13	■■■□□ 2.57
SCNN1A-222	ENST00000544882	SMARCA2	P51531	1590 aa		31.13	■■■□□ 2.57
SCNN1A-222	ENST00000544882	HMGXB3	Q12766	1538 aa		31.02	■■■□□ 2.56
SCNN1A-222	ENST00000544882	MROH2B	Q7Z745	1585 aa		30.95	■■■□□ 2.54
SCNN1A-222	ENST00000544882	PEG3	Q9GZU2	1588 aa		30.92	■■■□□ 2.54
SCNN1A-222	ENST00000544882	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.91	■■■□□ 2.54
SCNN1A-222	ENST00000544882	ERCC6	Q03468	1493 aa		30.67	■■■□□ 2.5
SCNN1A-222	ENST00000544882	NES	P48681	1621 aa		30.63	■■■□□ 2.49
SCNN1A-222	ENST00000544882	WIZ	O95785	1651 aa		30.6	■■■□□ 2.49
SCNN1A-222	ENST00000544882	RSF1	Q96T23	1441 aa	Predicted RBP	30.47	■■■□□ 2.47
SCNN1A-222	ENST00000544882	CUX2	O14529	1486 aa		30.47	■■■□□ 2.47
SCNN1A-222	ENST00000544882	LAMC3	Q9Y6N6	1575 aa		30.46	■■■□□ 2.47
SCNN1A-222	ENST00000544882	CADPS	Q9ULU8	1353 aa		30.3	■■■□□ 2.44
SCNN1A-222	ENST00000544882	PDS5B	Q9NTI5	1447 aa		30.29	■■■□□ 2.44
SCNN1A-222	ENST00000544882	KIF21A	Q7Z4S6	1674 aa		30.25	■■■□□ 2.43
SCNN1A-222	ENST00000544882	THOC2	Q8NI27	1593 aa	Known RBP	30.24	■■■□□ 2.43
SCNN1A-222	ENST00000544882	TOP2A	P11388	1531 aa	Known RBP	30.23	■■■□□ 2.43
SCNN1A-222	ENST00000544882	DNAJC5	Q9H3Z4	198 aa		30.06	■■■□□ 2.4
SCNN1A-222	ENST00000544882	CFTR	P13569	1480 aa		30.02	■■■□□ 2.4
SCNN1A-222	ENST00000544882	MRC2	Q9UBG0	1479 aa		30	■■■□□ 2.39
SCNN1A-222	ENST00000544882	FANCD2	Q9BXW9	1451 aa		29.95	■■■□□ 2.39
SCNN1A-222	ENST00000544882	CEP164	Q9UPV0	1460 aa		29.95	■■■□□ 2.39
SCNN1A-222	ENST00000544882	WDR62	O43379	1518 aa		29.91	■■■□□ 2.38
SCNN1A-222	ENST00000544882	CCDC88B	A6NC98	1476 aa		29.89	■■■□□ 2.38
SCNN1A-222	ENST00000544882	PRDM2	Q13029	1718 aa		29.76	■■■□□ 2.36
SCNN1A-222	ENST00000544882	URB2	Q14146	1524 aa	Known RBP	29.68	■■■□□ 2.34
SCNN1A-222	ENST00000544882	SUPT5H	O00267	1087 aa	Known RBP	29.56	■■■□□ 2.32
SCNN1A-222	ENST00000544882	TOPBP1	Q92547	1522 aa		29.43	■■■□□ 2.3
SCNN1A-222	ENST00000544882	ABCC8	Q09428	1581 aa		29.39	■■■□□ 2.29
SCNN1A-222	ENST00000544882	DNMBP	Q6XZF7	1577 aa		29.35	■■■□□ 2.29
SCNN1A-222	ENST00000544882	IFT140	Q96RY7	1462 aa		29.35	■■■□□ 2.29
SCNN1A-222	ENST00000544882	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.26	■■■□□ 2.27
SCNN1A-222	ENST00000544882	OSCAR	Q8IYS5	282 aa		29.17	■■■□□ 2.26
SCNN1A-222	ENST00000544882	POLA1	P09884	1462 aa	Predicted RBP	29.15	■■■□□ 2.26
SCNN1A-222	ENST00000544882	TARBP1	Q13395	1621 aa	Known RBP	29.13	■■■□□ 2.25
SCNN1A-222	ENST00000544882	EIF4G3	O43432	1585 aa	Known RBP	29.11	■■■□□ 2.25
SCNN1A-222	ENST00000544882	CUX1	P39880	1505 aa		29.05	■■■□□ 2.24
SCNN1A-222	ENST00000544882	AQR	O60306	1485 aa	Known RBP eCLIP	29.05	■■■□□ 2.24	4e-8	■■■■■ 31.9
SCNN1A-222	ENST00000544882	RAD54L2	Q9Y4B4	1467 aa		29.05	■■■□□ 2.24
SCNN1A-222	ENST00000544882	SOGA1	O94964	1423 aa		29.03	■■■□□ 2.24
SCNN1A-222	ENST00000544882	FGD5	Q6ZNL6	1462 aa		29.03	■■■□□ 2.24
SCNN1A-222	ENST00000544882	TDRD9	Q8NDG6	1382 aa	Known RBP	28.94	■■■□□ 2.22
SCNN1A-222	ENST00000544882	TRIM41	Q8WV44	630 aa		28.92	■■■□□ 2.22
SCNN1A-222	ENST00000544882	WDR97	A6NE52	1622 aa		28.86	■■■□□ 2.21
SCNN1A-222	ENST00000544882	CHD1	O14646	1710 aa		28.85	■■■□□ 2.21
SCNN1A-222	ENST00000544882	FBLN2	P98095	1184 aa		28.82	■■■□□ 2.2
SCNN1A-222	ENST00000544882	SNAPC4	Q5SXM2	1469 aa		28.77	■■■□□ 2.2
SCNN1A-222	ENST00000544882	GRIN2B	Q13224	1484 aa		28.74	■■■□□ 2.19
SCNN1A-222	ENST00000544882	RIMBP3C	A6NJZ7	1639 aa		28.73	■■■□□ 2.19
SCNN1A-222	ENST00000544882	RIMBP3B	A6NNM3	1639 aa		28.73	■■■□□ 2.19
SCNN1A-222	ENST00000544882	RIMBP3	Q9UFD9	1639 aa		28.73	■■■□□ 2.19
SCNN1A-222	ENST00000544882	SYNJ1	O43426	1573 aa		28.72	■■■□□ 2.19
SCNN1A-222	ENST00000544882	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.71	■■■□□ 2.19
SCNN1A-222	ENST00000544882	ABCA10	Q8WWZ4	1543 aa		28.71	■■■□□ 2.19
SCNN1A-222	ENST00000544882	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.7	■■■□□ 2.18
SCNN1A-222	ENST00000544882	BIVM-ERCC5	R4GMW8	1640 aa		28.69	■■■□□ 2.18
SCNN1A-222	ENST00000544882	GAPVD1	Q14C86	1478 aa		28.69	■■■□□ 2.18
SCNN1A-222	ENST00000544882	TOP2B	Q02880	1626 aa		28.68	■■■□□ 2.18
SCNN1A-222	ENST00000544882	ARHGEF11	O15085	1522 aa		28.67	■■■□□ 2.18
SCNN1A-222	ENST00000544882	PBRM1	Q86U86	1689 aa		28.65	■■■□□ 2.18
SCNN1A-222	ENST00000544882	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.65	■■■□□ 2.18
SCNN1A-222	ENST00000544882	ABCA5	Q8WWZ7	1642 aa		28.63	■■■□□ 2.17
SCNN1A-222	ENST00000544882	SYNJ2	O15056	1496 aa		28.59	■■■□□ 2.17
SCNN1A-222	ENST00000544882	CLASP1	Q7Z460	1538 aa		28.5	■■■□□ 2.15
SCNN1A-222	ENST00000544882	CYB5RL	Q6IPT4	315 aa		28.47	■■■□□ 2.15
SCNN1A-222	ENST00000544882	ARAP1	Q96P48	1450 aa		28.42	■■■□□ 2.14
SCNN1A-222	ENST00000544882	ADAMTS12	P58397	1594 aa		28.4	■■■□□ 2.14
SCNN1A-222	ENST00000544882	GRIN2A	Q12879	1464 aa		28.36	■■■□□ 2.13
SCNN1A-222	ENST00000544882	ERICH3	Q5RHP9	1530 aa		28.35	■■■□□ 2.13
SCNN1A-222	ENST00000544882	FHAD1	B1AJZ9	1412 aa		28.34	■■■□□ 2.13
SCNN1A-222	ENST00000544882	NUP160	Q12769	1436 aa		28.26	■■■□□ 2.11
SCNN1A-222	ENST00000544882	CEP170	Q5SW79	1584 aa		28.24	■■■□□ 2.11
SCNN1A-222	ENST00000544882	KIF27	Q86VH2	1401 aa		28.15	■■■□□ 2.1
SCNN1A-222	ENST00000544882	ERCC6L2	Q5T890	1561 aa		28.1	■■■□□ 2.09
SCNN1A-222	ENST00000544882	IGF1R	P08069	1367 aa		28.1	■■■□□ 2.09
SCNN1A-222	ENST00000544882	SHROOM2	Q13796	1616 aa		28.08	■■■□□ 2.09
SCNN1A-222	ENST00000544882	TRH	P20396	242 aa	Predicted RBP	28.05	■■■□□ 2.08
SCNN1A-222	ENST00000544882	CUL7	Q14999	1698 aa		28.01	■■■□□ 2.07
SCNN1A-222	ENST00000544882	JPH4	Q96JJ6	628 aa		27.99	■■■□□ 2.07

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms