RNA–Protein interactions for RNA: ENST00000544866.5

PDCD2-213, Transcript of programmed cell death 2, humanhuman

TSL 5

Gene PDCD2, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-213ENST00000544866 NISCHQ9Y2I1 1504 aa40.86■■■■■ 4.13
PDCD2-213ENST00000544866 CCDC180Q9P1Z9 1646 aa36.32■■■■□ 3.4
PDCD2-213ENST00000544866 ABCC9O60706 1549 aa35.33■■■■□ 3.25
PDCD2-213ENST00000544866 ZCCHC6Q5VYS8 1495 aaKnown RBP34.08■■■■□ 3.05
PDCD2-213ENST00000544866 NACADO15069 1562 aa34.06■■■■□ 3.04
PDCD2-213ENST00000544866 RB1CC1Q8TDY2 1594 aa34.06■■■■□ 3.04
PDCD2-213ENST00000544866 DCAF8L2P0C7V8 631 aa33.94■■■■□ 3.02
PDCD2-213ENST00000544866 MYO15BQ96JP2 1530 aa33.92■■■■□ 3.02
PDCD2-213ENST00000544866 DCAF1Q9Y4B6 1507 aa33.83■■■■□ 3.01
PDCD2-213ENST00000544866 UNC13AQ9UPW8 1703 aa33.42■■■□□ 2.94
PDCD2-213ENST00000544866 SCRIBQ14160 1630 aa33.11■■■□□ 2.89
PDCD2-213ENST00000544866 BICRAQ9NZM4 1560 aa33.09■■■□□ 2.89
PDCD2-213ENST00000544866 PABPN1Q86U42 306 aaKnown RBP eCLIP32.99■■■□□ 2.87
PDCD2-213ENST00000544866 SHROOM4Q9ULL8 1493 aa32.7■■■□□ 2.83
PDCD2-213ENST00000544866 DNAJC5BQ9UF47 199 aa32.31■■■□□ 2.76
PDCD2-213ENST00000544866 EIF4G1Q04637 1599 aaKnown RBP32.17■■■□□ 2.74
PDCD2-213ENST00000544866 CC2D2AQ9P2K1 1620 aa32.01■■■□□ 2.72
PDCD2-213ENST00000544866 CECR2Q9BXF3 1484 aa31.81■■■□□ 2.68
PDCD2-213ENST00000544866 SMARCA4P51532 1647 aa31.71■■■□□ 2.67
PDCD2-213ENST00000544866 BAZ1AQ9NRL2 1556 aaPredicted RBP31.64■■■□□ 2.66
PDCD2-213ENST00000544866 MROH2BQ7Z745 1585 aa31.5■■■□□ 2.63
PDCD2-213ENST00000544866 ATAD2BQ9ULI0 1458 aa31.46■■■□□ 2.63
PDCD2-213ENST00000544866 SMARCA2P51531 1590 aa31.43■■■□□ 2.62
PDCD2-213ENST00000544866 NCAPD3P42695 1498 aa31.41■■■□□ 2.62
PDCD2-213ENST00000544866 PEG3Q9GZU2 1588 aa31.4■■■□□ 2.62
PDCD2-213ENST00000544866 HMGXB3Q12766 1538 aa31.31■■■□□ 2.6
PDCD2-213ENST00000544866 BAZ1BQ9UIG0 1483 aaKnown RBP31.2■■■□□ 2.58
PDCD2-213ENST00000544866 WIZO95785 1651 aa31.19■■■□□ 2.58
PDCD2-213ENST00000544866 RSF1Q96T23 1441 aaPredicted RBP31.16■■■□□ 2.58
PDCD2-213ENST00000544866 TOP2AP11388 1531 aaKnown RBP30.85■■■□□ 2.53
PDCD2-213ENST00000544866 NESP48681 1621 aa30.64■■■□□ 2.5
PDCD2-213ENST00000544866 LAMC3Q9Y6N6 1575 aa30.58■■■□□ 2.49
PDCD2-213ENST00000544866 CADPSQ9ULU8 1353 aa30.48■■■□□ 2.47
PDCD2-213ENST00000544866 CCDC88BA6NC98 1476 aa30.46■■■□□ 2.47
PDCD2-213ENST00000544866 ERCC6Q03468 1493 aa30.41■■■□□ 2.46
PDCD2-213ENST00000544866 SUPT5HO00267 1087 aaKnown RBP30.39■■■□□ 2.46
PDCD2-213ENST00000544866 CFTRP13569 1480 aa30.36■■■□□ 2.45
PDCD2-213ENST00000544866 KIF21AQ7Z4S6 1674 aa30.35■■■□□ 2.45
PDCD2-213ENST00000544866 PDS5BQ9NTI5 1447 aa30.31■■■□□ 2.44
PDCD2-213ENST00000544866 PRDM2Q13029 1718 aa30.25■■■□□ 2.43
PDCD2-213ENST00000544866 THOC2Q8NI27 1593 aaKnown RBP30.2■■■□□ 2.43
PDCD2-213ENST00000544866 FANCD2Q9BXW9 1451 aa30.15■■■□□ 2.42
PDCD2-213ENST00000544866 CEP164Q9UPV0 1460 aa30.1■■■□□ 2.41
PDCD2-213ENST00000544866 CUX2O14529 1486 aa30.08■■■□□ 2.41
PDCD2-213ENST00000544866 MRC2Q9UBG0 1479 aa30.04■■■□□ 2.4
PDCD2-213ENST00000544866 WDR62O43379 1518 aa29.96■■■□□ 2.39
PDCD2-213ENST00000544866 URB2Q14146 1524 aaKnown RBP29.88■■■□□ 2.37
PDCD2-213ENST00000544866 TOPBP1Q92547 1522 aa29.71■■■□□ 2.35
PDCD2-213ENST00000544866 DNMBPQ6XZF7 1577 aa29.7■■■□□ 2.35
PDCD2-213ENST00000544866 ABCC8Q09428 1581 aa29.68■■■□□ 2.34
PDCD2-213ENST00000544866 CUX1P39880 1505 aa29.55■■■□□ 2.32
PDCD2-213ENST00000544866 POLA1P09884 1462 aaPredicted RBP29.46■■■□□ 2.31
PDCD2-213ENST00000544866 IFT140Q96RY7 1462 aa29.46■■■□□ 2.31
PDCD2-213ENST00000544866 TARBP1Q13395 1621 aaKnown RBP29.42■■■□□ 2.3
PDCD2-213ENST00000544866 FGD5Q6ZNL6 1462 aa29.41■■■□□ 2.3
PDCD2-213ENST00000544866 BIVM-ERCC5R4GMW8 1640 aa29.37■■■□□ 2.29
PDCD2-213ENST00000544866 WRNQ14191 1432 aaPredicted RBP eCLIP29.36■■■□□ 2.29
PDCD2-213ENST00000544866 ZNF608Q9ULD9 1512 aaPredicted RBP29.35■■■□□ 2.29
PDCD2-213ENST00000544866 SYNJ1O43426 1573 aa29.35■■■□□ 2.29
PDCD2-213ENST00000544866 TOP2BQ02880 1626 aa29.34■■■□□ 2.29
PDCD2-213ENST00000544866 RAD54L2Q9Y4B4 1467 aa29.32■■■□□ 2.28
PDCD2-213ENST00000544866 SOGA1O94964 1423 aa29.29■■■□□ 2.28
PDCD2-213ENST00000544866 EIF4G3O43432 1585 aaKnown RBP29.26■■■□□ 2.28
PDCD2-213ENST00000544866 WDR97A6NE52 1622 aa29.25■■■□□ 2.27
PDCD2-213ENST00000544866 AQRO60306 1485 aaKnown RBP eCLIP29.17■■■□□ 2.269e-7■■■■■ 36.8
PDCD2-213ENST00000544866 ABCA10Q8WWZ4 1543 aa29.13■■■□□ 2.25
PDCD2-213ENST00000544866 TDRD9Q8NDG6 1382 aaKnown RBP29.12■■■□□ 2.25
PDCD2-213ENST00000544866 ABCA5Q8WWZ7 1642 aa29.05■■■□□ 2.24
PDCD2-213ENST00000544866 PBRM1Q86U86 1689 aa29■■■□□ 2.23
PDCD2-213ENST00000544866 GAPVD1Q14C86 1478 aa28.98■■■□□ 2.23
PDCD2-213ENST00000544866 GRIN2BQ13224 1484 aa28.96■■■□□ 2.23
PDCD2-213ENST00000544866 DNAJC5Q9H3Z4 198 aa28.95■■■□□ 2.22
PDCD2-213ENST00000544866 SNAPC4Q5SXM2 1469 aa28.91■■■□□ 2.22
PDCD2-213ENST00000544866 CHD1O14646 1710 aa28.9■■■□□ 2.22
PDCD2-213ENST00000544866 MAGI1Q96QZ7 1491 aaPredicted RBP28.88■■■□□ 2.21
PDCD2-213ENST00000544866 ERICH3Q5RHP9 1530 aa28.79■■■□□ 2.2
PDCD2-213ENST00000544866 OSCARQ8IYS5 282 aa28.78■■■□□ 2.2
PDCD2-213ENST00000544866 SYNJ2O15056 1496 aa28.76■■■□□ 2.19
PDCD2-213ENST00000544866 ADAMTS12P58397 1594 aa28.75■■■□□ 2.19
PDCD2-213ENST00000544866 KIF27Q86VH2 1401 aa28.72■■■□□ 2.19
PDCD2-213ENST00000544866 FBLN2P98095 1184 aa28.71■■■□□ 2.19
PDCD2-213ENST00000544866 TRIM41Q8WV44 630 aa28.69■■■□□ 2.18
PDCD2-213ENST00000544866 CHMP7Q8WUX9 453 aaPredicted RBP28.66■■■□□ 2.18
PDCD2-213ENST00000544866 FHAD1B1AJZ9 1412 aa28.65■■■□□ 2.18
PDCD2-213ENST00000544866 GRIN2AQ12879 1464 aa28.61■■■□□ 2.17
PDCD2-213ENST00000544866 IGF1RP08069 1367 aa28.6■■■□□ 2.17
PDCD2-213ENST00000544866 CUL7Q14999 1698 aa28.57■■■□□ 2.16
PDCD2-213ENST00000544866 CLASP1Q7Z460 1538 aa28.56■■■□□ 2.16
PDCD2-213ENST00000544866 RUSC2Q8N2Y8 1516 aa28.55■■■□□ 2.16
PDCD2-213ENST00000544866 CEP170Q5SW79 1584 aa28.49■■■□□ 2.15
PDCD2-213ENST00000544866 CHIC1Q5VXU3 224 aa28.48■■■□□ 2.15
PDCD2-213ENST00000544866 NUP160Q12769 1436 aa28.48■■■□□ 2.15
PDCD2-213ENST00000544866 CARMIL1Q5VZK9 1371 aa28.42■■■□□ 2.14
PDCD2-213ENST00000544866 RIMBP3CA6NJZ7 1639 aa28.42■■■□□ 2.14
PDCD2-213ENST00000544866 RIMBP3BA6NNM3 1639 aa28.42■■■□□ 2.14
PDCD2-213ENST00000544866 RIMBP3Q9UFD9 1639 aa28.42■■■□□ 2.14
PDCD2-213ENST00000544866 ARHGEF11O15085 1522 aa28.4■■■□□ 2.14
PDCD2-213ENST00000544866 SHROOM2Q13796 1616 aa28.29■■■□□ 2.12
PDCD2-213ENST00000544866 RAPGEF2Q9Y4G8 1499 aa28.28■■■□□ 2.12
PDCD2-213ENST00000544866 EEA1Q15075 1411 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms