RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 NISCHQ9Y2I1 1504 aa32.94■■■□□ 2.86
USP28-212ENST00000544750 ABCC9O60706 1549 aa29.97■■■□□ 2.39
USP28-212ENST00000544750 CCDC180Q9P1Z9 1646 aa29.76■■■□□ 2.35
USP28-212ENST00000544750 DNAJC5BQ9UF47 199 aa28.46■■■□□ 2.15
USP28-212ENST00000544750 RB1CC1Q8TDY2 1594 aa28.42■■■□□ 2.14
USP28-212ENST00000544750 NACADO15069 1562 aa28.17■■■□□ 2.1
USP28-212ENST00000544750 UNC13AQ9UPW8 1703 aa27.92■■■□□ 2.06
USP28-212ENST00000544750 PABPN1Q86U42 306 aaKnown RBP eCLIP27.81■■■□□ 2.04
USP28-212ENST00000544750 DCAF8L2P0C7V8 631 aa27.76■■■□□ 2.03
USP28-212ENST00000544750 MYO15BQ96JP2 1530 aa27.71■■■□□ 2.03
USP28-212ENST00000544750 BICRAQ9NZM4 1560 aa27.69■■■□□ 2.02
USP28-212ENST00000544750 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
USP28-212ENST00000544750 DCAF1Q9Y4B6 1507 aa27.23■■□□□ 1.95
USP28-212ENST00000544750 SHROOM4Q9ULL8 1493 aa27.23■■□□□ 1.95
USP28-212ENST00000544750 CC2D2AQ9P2K1 1620 aa27.12■■□□□ 1.93
USP28-212ENST00000544750 CECR2Q9BXF3 1484 aa27.05■■□□□ 1.92
USP28-212ENST00000544750 SCRIBQ14160 1630 aa27.01■■□□□ 1.92
USP28-212ENST00000544750 EIF4G1Q04637 1599 aaKnown RBP26.98■■□□□ 1.91
USP28-212ENST00000544750 DNAJC5Q9H3Z4 198 aa26.35■■□□□ 1.81
USP28-212ENST00000544750 NCAPD3P42695 1498 aa26.01■■□□□ 1.75
USP28-212ENST00000544750 CUX2O14529 1486 aa26■■□□□ 1.75
USP28-212ENST00000544750 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
USP28-212ENST00000544750 ERCC6Q03468 1493 aa25.85■■□□□ 1.73
USP28-212ENST00000544750 HMGXB3Q12766 1538 aa25.8■■□□□ 1.72
USP28-212ENST00000544750 SMARCA4P51532 1647 aa25.79■■□□□ 1.72
USP28-212ENST00000544750 SMARCA2P51531 1590 aa25.77■■□□□ 1.72
USP28-212ENST00000544750 NESP48681 1621 aa25.69■■□□□ 1.7
USP28-212ENST00000544750 PEG3Q9GZU2 1588 aa25.57■■□□□ 1.68
USP28-212ENST00000544750 BAZ1AQ9NRL2 1556 aaPredicted RBP25.57■■□□□ 1.68
USP28-212ENST00000544750 BAZ1BQ9UIG0 1483 aaKnown RBP25.56■■□□□ 1.68
USP28-212ENST00000544750 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
USP28-212ENST00000544750 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
USP28-212ENST00000544750 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
USP28-212ENST00000544750 MROH2BQ7Z745 1585 aa25.37■■□□□ 1.65
USP28-212ENST00000544750 PDS5BQ9NTI5 1447 aa25.28■■□□□ 1.64
USP28-212ENST00000544750 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
USP28-212ENST00000544750 MRC2Q9UBG0 1479 aa25.1■■□□□ 1.61
USP28-212ENST00000544750 WDR62O43379 1518 aa25.1■■□□□ 1.61
USP28-212ENST00000544750 WIZO95785 1651 aa25.07■■□□□ 1.6
USP28-212ENST00000544750 TRIM41Q8WV44 630 aa24.95■■□□□ 1.58
USP28-212ENST00000544750 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
USP28-212ENST00000544750 FANCD2Q9BXW9 1451 aa24.87■■□□□ 1.57
USP28-212ENST00000544750 CFTRP13569 1480 aa24.83■■□□□ 1.57
USP28-212ENST00000544750 URB2Q14146 1524 aaKnown RBP24.73■■□□□ 1.55
USP28-212ENST00000544750 TOP2AP11388 1531 aaKnown RBP24.71■■□□□ 1.55
USP28-212ENST00000544750 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
USP28-212ENST00000544750 OSCARQ8IYS5 282 aa24.69■■□□□ 1.54
USP28-212ENST00000544750 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
USP28-212ENST00000544750 RIMBP3CA6NJZ7 1639 aa24.5■■□□□ 1.51
USP28-212ENST00000544750 RIMBP3BA6NNM3 1639 aa24.5■■□□□ 1.51
USP28-212ENST00000544750 RIMBP3Q9UFD9 1639 aa24.5■■□□□ 1.51
USP28-212ENST00000544750 ZNF608Q9ULD9 1512 aaPredicted RBP24.46■■□□□ 1.51
USP28-212ENST00000544750 IFT140Q96RY7 1462 aa24.45■■□□□ 1.5
USP28-212ENST00000544750 CCDC88BA6NC98 1476 aa24.42■■□□□ 1.5
USP28-212ENST00000544750 TOPBP1Q92547 1522 aa24.39■■□□□ 1.49
USP28-212ENST00000544750 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
USP28-212ENST00000544750 EIF4G3O43432 1585 aaKnown RBP24.33■■□□□ 1.49
USP28-212ENST00000544750 ABCC8Q09428 1581 aa24.29■■□□□ 1.48
USP28-212ENST00000544750 DNMBPQ6XZF7 1577 aa24.28■■□□□ 1.48
USP28-212ENST00000544750 TARBP1Q13395 1621 aaKnown RBP24.25■■□□□ 1.47
USP28-212ENST00000544750 CHD1O14646 1710 aa24.25■■□□□ 1.47
USP28-212ENST00000544750 AQRO60306 1485 aaKnown RBP eCLIP24.17■■□□□ 1.46
USP28-212ENST00000544750 CYB5RLQ6IPT4 315 aa24.12■■□□□ 1.45
USP28-212ENST00000544750 POLA1P09884 1462 aaPredicted RBP24.12■■□□□ 1.45
USP28-212ENST00000544750 ARAP1Q96P48 1450 aa24.11■■□□□ 1.45
USP28-212ENST00000544750 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
USP28-212ENST00000544750 WDR97A6NE52 1622 aa23.97■■□□□ 1.43
USP28-212ENST00000544750 FBLN2P98095 1184 aa23.97■■□□□ 1.43
USP28-212ENST00000544750 CLASP1Q7Z460 1538 aa23.95■■□□□ 1.43
USP28-212ENST00000544750 SOGA1O94964 1423 aa23.95■■□□□ 1.42
USP28-212ENST00000544750 TDRD9Q8NDG6 1382 aaKnown RBP23.94■■□□□ 1.42
USP28-212ENST00000544750 TRHP20396 242 aaPredicted RBP23.91■■□□□ 1.42
USP28-212ENST00000544750 SNAPC4Q5SXM2 1469 aa23.91■■□□□ 1.42
USP28-212ENST00000544750 FGD5Q6ZNL6 1462 aa23.9■■□□□ 1.42
USP28-212ENST00000544750 CUX1P39880 1505 aa23.86■■□□□ 1.41
USP28-212ENST00000544750 MAGI1Q96QZ7 1491 aaPredicted RBP23.86■■□□□ 1.41
USP28-212ENST00000544750 SYNJ1O43426 1573 aa23.85■■□□□ 1.41
USP28-212ENST00000544750 GRIN2BQ13224 1484 aa23.8■■□□□ 1.4
USP28-212ENST00000544750 CHMP7Q8WUX9 453 aaPredicted RBP23.78■■□□□ 1.4
USP28-212ENST00000544750 PBRM1Q86U86 1689 aa23.77■■□□□ 1.4
USP28-212ENST00000544750 SYNJ2O15056 1496 aa23.77■■□□□ 1.4
USP28-212ENST00000544750 GAPVD1Q14C86 1478 aa23.68■■□□□ 1.38
USP28-212ENST00000544750 ABCA5Q8WWZ7 1642 aa23.67■■□□□ 1.38
USP28-212ENST00000544750 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.37
USP28-212ENST00000544750 ERCC6L2Q5T890 1561 aa23.54■■□□□ 1.36
USP28-212ENST00000544750 GRIN2AQ12879 1464 aa23.51■■□□□ 1.35
USP28-212ENST00000544750 ADAMTS12P58397 1594 aa23.48■■□□□ 1.35
USP28-212ENST00000544750 NUP160Q12769 1436 aa23.48■■□□□ 1.35
USP28-212ENST00000544750 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
USP28-212ENST00000544750 SHROOM2Q13796 1616 aa23.46■■□□□ 1.35
USP28-212ENST00000544750 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
USP28-212ENST00000544750 AEBP2Q6ZN18 517 aaPredicted RBP23.43■■□□□ 1.34
USP28-212ENST00000544750 WRNQ14191 1432 aaPredicted RBP eCLIP23.42■■□□□ 1.34
USP28-212ENST00000544750 TOP2BQ02880 1626 aa23.4■■□□□ 1.34
USP28-212ENST00000544750 KIF13AQ9H1H9 1805 aa23.37■■□□□ 1.33
USP28-212ENST00000544750 FHAD1B1AJZ9 1412 aa23.36■■□□□ 1.33
USP28-212ENST00000544750 ERICH3Q5RHP9 1530 aa23.33■■□□□ 1.33
USP28-212ENST00000544750 SUPT5HO00267 1087 aaKnown RBP23.23■■□□□ 1.31
USP28-212ENST00000544750 PRG4Q92954 1404 aaPredicted RBP23.22■■□□□ 1.31
USP28-212ENST00000544750 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms