RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 NISCHQ9Y2I1 1504 aa32.94■■■□□ 2.86
USP28-212ENST00000544750 ABCC9O60706 1549 aa29.97■■■□□ 2.39
USP28-212ENST00000544750 CCDC180Q9P1Z9 1646 aa29.76■■■□□ 2.35
USP28-212ENST00000544750 DNAJC5BQ9UF47 199 aa28.46■■■□□ 2.15
USP28-212ENST00000544750 RB1CC1Q8TDY2 1594 aa28.42■■■□□ 2.14
USP28-212ENST00000544750 NACADO15069 1562 aa28.17■■■□□ 2.1
USP28-212ENST00000544750 UNC13AQ9UPW8 1703 aa27.92■■■□□ 2.06
USP28-212ENST00000544750 PABPN1Q86U42 306 aaKnown RBP eCLIP27.81■■■□□ 2.04
USP28-212ENST00000544750 DCAF8L2P0C7V8 631 aa27.76■■■□□ 2.03
USP28-212ENST00000544750 MYO15BQ96JP2 1530 aa27.71■■■□□ 2.03
USP28-212ENST00000544750 BICRAQ9NZM4 1560 aa27.69■■■□□ 2.02
USP28-212ENST00000544750 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
USP28-212ENST00000544750 DCAF1Q9Y4B6 1507 aa27.23■■□□□ 1.95
USP28-212ENST00000544750 SHROOM4Q9ULL8 1493 aa27.23■■□□□ 1.95
USP28-212ENST00000544750 CC2D2AQ9P2K1 1620 aa27.12■■□□□ 1.93
USP28-212ENST00000544750 CECR2Q9BXF3 1484 aa27.05■■□□□ 1.92
USP28-212ENST00000544750 SCRIBQ14160 1630 aa27.01■■□□□ 1.92
USP28-212ENST00000544750 EIF4G1Q04637 1599 aaKnown RBP26.98■■□□□ 1.91
USP28-212ENST00000544750 DNAJC5Q9H3Z4 198 aa26.35■■□□□ 1.81
USP28-212ENST00000544750 NCAPD3P42695 1498 aa26.01■■□□□ 1.75
USP28-212ENST00000544750 CUX2O14529 1486 aa26■■□□□ 1.75
USP28-212ENST00000544750 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
USP28-212ENST00000544750 ERCC6Q03468 1493 aa25.85■■□□□ 1.73
USP28-212ENST00000544750 HMGXB3Q12766 1538 aa25.8■■□□□ 1.72
USP28-212ENST00000544750 SMARCA4P51532 1647 aa25.79■■□□□ 1.72
USP28-212ENST00000544750 SMARCA2P51531 1590 aa25.77■■□□□ 1.72
USP28-212ENST00000544750 NESP48681 1621 aa25.69■■□□□ 1.7
USP28-212ENST00000544750 PEG3Q9GZU2 1588 aa25.57■■□□□ 1.68
USP28-212ENST00000544750 BAZ1AQ9NRL2 1556 aaPredicted RBP25.57■■□□□ 1.68
USP28-212ENST00000544750 BAZ1BQ9UIG0 1483 aaKnown RBP25.56■■□□□ 1.68
USP28-212ENST00000544750 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
USP28-212ENST00000544750 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
USP28-212ENST00000544750 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
USP28-212ENST00000544750 MROH2BQ7Z745 1585 aa25.37■■□□□ 1.65
USP28-212ENST00000544750 PDS5BQ9NTI5 1447 aa25.28■■□□□ 1.64
USP28-212ENST00000544750 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
USP28-212ENST00000544750 MRC2Q9UBG0 1479 aa25.1■■□□□ 1.61
USP28-212ENST00000544750 WDR62O43379 1518 aa25.1■■□□□ 1.61
USP28-212ENST00000544750 WIZO95785 1651 aa25.07■■□□□ 1.6
USP28-212ENST00000544750 TRIM41Q8WV44 630 aa24.95■■□□□ 1.58
USP28-212ENST00000544750 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
USP28-212ENST00000544750 FANCD2Q9BXW9 1451 aa24.87■■□□□ 1.57
USP28-212ENST00000544750 CFTRP13569 1480 aa24.83■■□□□ 1.57
USP28-212ENST00000544750 URB2Q14146 1524 aaKnown RBP24.73■■□□□ 1.55
USP28-212ENST00000544750 TOP2AP11388 1531 aaKnown RBP24.71■■□□□ 1.55
USP28-212ENST00000544750 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
USP28-212ENST00000544750 OSCARQ8IYS5 282 aa24.69■■□□□ 1.54
USP28-212ENST00000544750 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
USP28-212ENST00000544750 RIMBP3CA6NJZ7 1639 aa24.5■■□□□ 1.51
USP28-212ENST00000544750 RIMBP3BA6NNM3 1639 aa24.5■■□□□ 1.51
USP28-212ENST00000544750 RIMBP3Q9UFD9 1639 aa24.5■■□□□ 1.51
USP28-212ENST00000544750 ZNF608Q9ULD9 1512 aaPredicted RBP24.46■■□□□ 1.51
USP28-212ENST00000544750 IFT140Q96RY7 1462 aa24.45■■□□□ 1.5
USP28-212ENST00000544750 CCDC88BA6NC98 1476 aa24.42■■□□□ 1.5
USP28-212ENST00000544750 TOPBP1Q92547 1522 aa24.39■■□□□ 1.49
USP28-212ENST00000544750 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
USP28-212ENST00000544750 EIF4G3O43432 1585 aaKnown RBP24.33■■□□□ 1.49
USP28-212ENST00000544750 ABCC8Q09428 1581 aa24.29■■□□□ 1.48
USP28-212ENST00000544750 DNMBPQ6XZF7 1577 aa24.28■■□□□ 1.48
USP28-212ENST00000544750 TARBP1Q13395 1621 aaKnown RBP24.25■■□□□ 1.47
USP28-212ENST00000544750 CHD1O14646 1710 aa24.25■■□□□ 1.47
USP28-212ENST00000544750 AQRO60306 1485 aaKnown RBP eCLIP24.17■■□□□ 1.46
USP28-212ENST00000544750 CYB5RLQ6IPT4 315 aa24.12■■□□□ 1.45
USP28-212ENST00000544750 POLA1P09884 1462 aaPredicted RBP24.12■■□□□ 1.45
USP28-212ENST00000544750 ARAP1Q96P48 1450 aa24.11■■□□□ 1.45
USP28-212ENST00000544750 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
USP28-212ENST00000544750 WDR97A6NE52 1622 aa23.97■■□□□ 1.43
USP28-212ENST00000544750 FBLN2P98095 1184 aa23.97■■□□□ 1.43
USP28-212ENST00000544750 CLASP1Q7Z460 1538 aa23.95■■□□□ 1.43
USP28-212ENST00000544750 SOGA1O94964 1423 aa23.95■■□□□ 1.42
USP28-212ENST00000544750 TDRD9Q8NDG6 1382 aaKnown RBP23.94■■□□□ 1.42
USP28-212ENST00000544750 TRHP20396 242 aaPredicted RBP23.91■■□□□ 1.42
USP28-212ENST00000544750 SNAPC4Q5SXM2 1469 aa23.91■■□□□ 1.42
USP28-212ENST00000544750 FGD5Q6ZNL6 1462 aa23.9■■□□□ 1.42
USP28-212ENST00000544750 CUX1P39880 1505 aa23.86■■□□□ 1.41
USP28-212ENST00000544750 MAGI1Q96QZ7 1491 aaPredicted RBP23.86■■□□□ 1.41
USP28-212ENST00000544750 SYNJ1O43426 1573 aa23.85■■□□□ 1.41
USP28-212ENST00000544750 GRIN2BQ13224 1484 aa23.8■■□□□ 1.4
USP28-212ENST00000544750 CHMP7Q8WUX9 453 aaPredicted RBP23.78■■□□□ 1.4
USP28-212ENST00000544750 PBRM1Q86U86 1689 aa23.77■■□□□ 1.4
USP28-212ENST00000544750 SYNJ2O15056 1496 aa23.77■■□□□ 1.4
USP28-212ENST00000544750 GAPVD1Q14C86 1478 aa23.68■■□□□ 1.38
USP28-212ENST00000544750 ABCA5Q8WWZ7 1642 aa23.67■■□□□ 1.38
USP28-212ENST00000544750 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.37
USP28-212ENST00000544750 ERCC6L2Q5T890 1561 aa23.54■■□□□ 1.36
USP28-212ENST00000544750 GRIN2AQ12879 1464 aa23.51■■□□□ 1.35
USP28-212ENST00000544750 ADAMTS12P58397 1594 aa23.48■■□□□ 1.35
USP28-212ENST00000544750 NUP160Q12769 1436 aa23.48■■□□□ 1.35
USP28-212ENST00000544750 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
USP28-212ENST00000544750 SHROOM2Q13796 1616 aa23.46■■□□□ 1.35
USP28-212ENST00000544750 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
USP28-212ENST00000544750 AEBP2Q6ZN18 517 aaPredicted RBP23.43■■□□□ 1.34
USP28-212ENST00000544750 WRNQ14191 1432 aaPredicted RBP eCLIP23.42■■□□□ 1.34
USP28-212ENST00000544750 TOP2BQ02880 1626 aa23.4■■□□□ 1.34
USP28-212ENST00000544750 KIF13AQ9H1H9 1805 aa23.37■■□□□ 1.33
USP28-212ENST00000544750 FHAD1B1AJZ9 1412 aa23.36■■□□□ 1.33
USP28-212ENST00000544750 ERICH3Q5RHP9 1530 aa23.33■■□□□ 1.33
USP28-212ENST00000544750 SUPT5HO00267 1087 aaKnown RBP23.23■■□□□ 1.31
USP28-212ENST00000544750 PRG4Q92954 1404 aaPredicted RBP23.22■■□□□ 1.31
USP28-212ENST00000544750 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms