RNA–Protein interactions for RNA: ENST00000544652.1

DDX11-227, Transcript of DEAD/H-box helicase 11, humanhuman

TSL 5

Gene DDX11, Length 400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX11-227ENST00000544652 NISCHQ9Y2I1 1504 aa31.27■■■□□ 2.6
DDX11-227ENST00000544652 CCDC180Q9P1Z9 1646 aa27.76■■■□□ 2.03
DDX11-227ENST00000544652 CHIC1Q5VXU3 224 aa27.3■■□□□ 1.96
DDX11-227ENST00000544652 AEBP2Q6ZN18 517 aaPredicted RBP27.03■■□□□ 1.92
DDX11-227ENST00000544652 ABCC9O60706 1549 aa26.53■■□□□ 1.84
DDX11-227ENST00000544652 ZCCHC6Q5VYS8 1495 aaKnown RBP26.15■■□□□ 1.78
DDX11-227ENST00000544652 DCAF1Q9Y4B6 1507 aa25.95■■□□□ 1.74
DDX11-227ENST00000544652 MYO15BQ96JP2 1530 aa25.91■■□□□ 1.74
DDX11-227ENST00000544652 NACADO15069 1562 aa25.9■■□□□ 1.74
DDX11-227ENST00000544652 RB1CC1Q8TDY2 1594 aa25.82■■□□□ 1.72
DDX11-227ENST00000544652 DCAF8L2P0C7V8 631 aa25.72■■□□□ 1.71
DDX11-227ENST00000544652 UNC13AQ9UPW8 1703 aa25.44■■□□□ 1.66
DDX11-227ENST00000544652 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
DDX11-227ENST00000544652 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
DDX11-227ENST00000544652 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
DDX11-227ENST00000544652 PABPN1Q86U42 306 aaKnown RBP eCLIP24.78■■□□□ 1.56
DDX11-227ENST00000544652 EIF4G1Q04637 1599 aaKnown RBP24.32■■□□□ 1.48
DDX11-227ENST00000544652 CECR2Q9BXF3 1484 aa24.27■■□□□ 1.48
DDX11-227ENST00000544652 SMARCA4P51532 1647 aa24.22■■□□□ 1.47
DDX11-227ENST00000544652 BAZ1AQ9NRL2 1556 aaPredicted RBP24.22■■□□□ 1.47
DDX11-227ENST00000544652 CC2D2AQ9P2K1 1620 aa24.13■■□□□ 1.45
DDX11-227ENST00000544652 MROH2BQ7Z745 1585 aa24.09■■□□□ 1.45
DDX11-227ENST00000544652 PHF23Q9BUL5 403 aaPredicted RBP24.09■■□□□ 1.45
DDX11-227ENST00000544652 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
DDX11-227ENST00000544652 SMARCA2P51531 1590 aa23.94■■□□□ 1.42
DDX11-227ENST00000544652 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
DDX11-227ENST00000544652 RSF1Q96T23 1441 aaPredicted RBP23.93■■□□□ 1.42
DDX11-227ENST00000544652 WIZO95785 1651 aa23.92■■□□□ 1.42
DDX11-227ENST00000544652 ATAD2BQ9ULI0 1458 aa23.9■■□□□ 1.42
DDX11-227ENST00000544652 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
DDX11-227ENST00000544652 HMGXB3Q12766 1538 aa23.82■■□□□ 1.4
DDX11-227ENST00000544652 BAZ1BQ9UIG0 1483 aaKnown RBP23.72■■□□□ 1.39
DDX11-227ENST00000544652 TOP2AP11388 1531 aaKnown RBP23.65■■□□□ 1.38
DDX11-227ENST00000544652 SUPT5HO00267 1087 aaKnown RBP23.5■■□□□ 1.35
DDX11-227ENST00000544652 CCDC88BA6NC98 1476 aa23.32■■□□□ 1.32
DDX11-227ENST00000544652 PRDM2Q13029 1718 aa23.23■■□□□ 1.31
DDX11-227ENST00000544652 LAMC3Q9Y6N6 1575 aa23.21■■□□□ 1.31
DDX11-227ENST00000544652 CADPSQ9ULU8 1353 aa23.12■■□□□ 1.29
DDX11-227ENST00000544652 NESP48681 1621 aa23.11■■□□□ 1.29
DDX11-227ENST00000544652 CFTRP13569 1480 aa23.11■■□□□ 1.29
DDX11-227ENST00000544652 KIF21AQ7Z4S6 1674 aa23■■□□□ 1.27
DDX11-227ENST00000544652 PDS5BQ9NTI5 1447 aa22.92■■□□□ 1.26
DDX11-227ENST00000544652 FANCD2Q9BXW9 1451 aa22.87■■□□□ 1.25
DDX11-227ENST00000544652 SENP3Q9H4L4 574 aaPredicted RBP22.85■■□□□ 1.25
DDX11-227ENST00000544652 ERCC6Q03468 1493 aa22.81■■□□□ 1.24
DDX11-227ENST00000544652 CEP164Q9UPV0 1460 aa22.81■■□□□ 1.24
DDX11-227ENST00000544652 THOC2Q8NI27 1593 aaKnown RBP22.79■■□□□ 1.24
DDX11-227ENST00000544652 MRC2Q9UBG0 1479 aa22.7■■□□□ 1.22
DDX11-227ENST00000544652 WDR62O43379 1518 aa22.67■■□□□ 1.22
DDX11-227ENST00000544652 URB2Q14146 1524 aaKnown RBP22.65■■□□□ 1.22
DDX11-227ENST00000544652 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
DDX11-227ENST00000544652 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
DDX11-227ENST00000544652 PLPPR3Q6T4P5 718 aa22.62■■□□□ 1.21
DDX11-227ENST00000544652 BIVM-ERCC5R4GMW8 1640 aa22.6■■□□□ 1.21
DDX11-227ENST00000544652 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
DDX11-227ENST00000544652 CUX1P39880 1505 aa22.58■■□□□ 1.21
DDX11-227ENST00000544652 TOP2BQ02880 1626 aa22.55■■□□□ 1.2
DDX11-227ENST00000544652 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
DDX11-227ENST00000544652 WRNQ14191 1432 aaPredicted RBP eCLIP22.54■■□□□ 1.2
DDX11-227ENST00000544652 CUX2O14529 1486 aa22.5■■□□□ 1.19
DDX11-227ENST00000544652 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
DDX11-227ENST00000544652 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
DDX11-227ENST00000544652 WDR97A6NE52 1622 aa22.39■■□□□ 1.17
DDX11-227ENST00000544652 TARBP1Q13395 1621 aaKnown RBP22.39■■□□□ 1.17
DDX11-227ENST00000544652 IFT140Q96RY7 1462 aa22.32■■□□□ 1.16
DDX11-227ENST00000544652 SOGA1O94964 1423 aa22.28■■□□□ 1.16
DDX11-227ENST00000544652 RAD54L2Q9Y4B4 1467 aa22.27■■□□□ 1.16
DDX11-227ENST00000544652 ABCA10Q8WWZ4 1543 aa22.24■■□□□ 1.15
DDX11-227ENST00000544652 TRIM41Q8WV44 630 aa22.21■■□□□ 1.15
DDX11-227ENST00000544652 EIF4G3O43432 1585 aaKnown RBP22.2■■□□□ 1.14
DDX11-227ENST00000544652 ABCA5Q8WWZ7 1642 aa22.19■■□□□ 1.14
DDX11-227ENST00000544652 ZNF608Q9ULD9 1512 aaPredicted RBP22.17■■□□□ 1.14
DDX11-227ENST00000544652 PBRM1Q86U86 1689 aa22.16■■□□□ 1.14
DDX11-227ENST00000544652 TDRD9Q8NDG6 1382 aaKnown RBP22.07■■□□□ 1.12
DDX11-227ENST00000544652 AQRO60306 1485 aaKnown RBP eCLIP22.07■■□□□ 1.121e-9■■■■■ 30.7
DDX11-227ENST00000544652 GAPVD1Q14C86 1478 aa22.06■■□□□ 1.12
DDX11-227ENST00000544652 KIF27Q86VH2 1401 aa22.03■■□□□ 1.12
DDX11-227ENST00000544652 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
DDX11-227ENST00000544652 GRIN2BQ13224 1484 aa21.99■■□□□ 1.11
DDX11-227ENST00000544652 RUSC2Q8N2Y8 1516 aa21.98■■□□□ 1.11
DDX11-227ENST00000544652 CUL7Q14999 1698 aa21.95■■□□□ 1.1
DDX11-227ENST00000544652 MAGI1Q96QZ7 1491 aaPredicted RBP21.93■■□□□ 1.1
DDX11-227ENST00000544652 EEA1Q15075 1411 aa21.92■■□□□ 1.1
DDX11-227ENST00000544652 ADAMTS12P58397 1594 aa21.91■■□□□ 1.1
DDX11-227ENST00000544652 CHD1O14646 1710 aa21.91■■□□□ 1.1
DDX11-227ENST00000544652 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
DDX11-227ENST00000544652 IGF1RP08069 1367 aa21.87■■□□□ 1.09
DDX11-227ENST00000544652 SYNJ2O15056 1496 aa21.82■■□□□ 1.08
DDX11-227ENST00000544652 FHAD1B1AJZ9 1412 aa21.81■■□□□ 1.08
DDX11-227ENST00000544652 PRXQ9BXM0 1461 aa21.76■■□□□ 1.07
DDX11-227ENST00000544652 CSRNP3Q8WYN3 585 aa21.75■■□□□ 1.07
DDX11-227ENST00000544652 KIF21BO75037 1637 aa21.75■■□□□ 1.07
DDX11-227ENST00000544652 CARMIL1Q5VZK9 1371 aa21.74■■□□□ 1.07
DDX11-227ENST00000544652 GRIN2AQ12879 1464 aa21.73■■□□□ 1.07
DDX11-227ENST00000544652 RAPGEF2Q9Y4G8 1499 aa21.71■■□□□ 1.07
DDX11-227ENST00000544652 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
DDX11-227ENST00000544652 CTTNBP2Q8WZ74 1663 aa21.67■■□□□ 1.06
DDX11-227ENST00000544652 CHMP7Q8WUX9 453 aaPredicted RBP21.67■■□□□ 1.06
DDX11-227ENST00000544652 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
DDX11-227ENST00000544652 NUP160Q12769 1436 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms