RNA–Protein interactions for RNA: ENST00000544513.1

SEMA4D-224, Transcript of semaphorin 4D, humanhuman

TSL 5

Gene SEMA4D, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-224ENST00000544513 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
SEMA4D-224ENST00000544513 CCDC180Q9P1Z9 1646 aa31.36■■■□□ 2.61
SEMA4D-224ENST00000544513 ABCC9O60706 1549 aa31.34■■■□□ 2.61
SEMA4D-224ENST00000544513 RB1CC1Q8TDY2 1594 aa29.85■■■□□ 2.37
SEMA4D-224ENST00000544513 NACADO15069 1562 aa29.67■■■□□ 2.34
SEMA4D-224ENST00000544513 DNAJC5BQ9UF47 199 aa29.49■■■□□ 2.31
SEMA4D-224ENST00000544513 DCAF8L2P0C7V8 631 aa29.41■■■□□ 2.3
SEMA4D-224ENST00000544513 MYO15BQ96JP2 1530 aa29.31■■■□□ 2.28
SEMA4D-224ENST00000544513 PABPN1Q86U42 306 aaKnown RBP eCLIP29.18■■■□□ 2.26
SEMA4D-224ENST00000544513 UNC13AQ9UPW8 1703 aa29.15■■■□□ 2.26
SEMA4D-224ENST00000544513 BICRAQ9NZM4 1560 aa29.02■■■□□ 2.24
SEMA4D-224ENST00000544513 ZCCHC6Q5VYS8 1495 aaKnown RBP28.97■■■□□ 2.23
SEMA4D-224ENST00000544513 DCAF1Q9Y4B6 1507 aa28.92■■■□□ 2.22
SEMA4D-224ENST00000544513 SHROOM4Q9ULL8 1493 aa28.65■■■□□ 2.18
SEMA4D-224ENST00000544513 SCRIBQ14160 1630 aa28.52■■■□□ 2.16
SEMA4D-224ENST00000544513 CC2D2AQ9P2K1 1620 aa28.32■■■□□ 2.12
SEMA4D-224ENST00000544513 EIF4G1Q04637 1599 aaKnown RBP28.28■■■□□ 2.12
SEMA4D-224ENST00000544513 CECR2Q9BXF3 1484 aa28.26■■■□□ 2.11
SEMA4D-224ENST00000544513 NCAPD3P42695 1498 aa27.43■■□□□ 1.98
SEMA4D-224ENST00000544513 ATAD2BQ9ULI0 1458 aa27.32■■□□□ 1.96
SEMA4D-224ENST00000544513 SMARCA4P51532 1647 aa27.26■■□□□ 1.95
SEMA4D-224ENST00000544513 SMARCA2P51531 1590 aa27.22■■□□□ 1.95
SEMA4D-224ENST00000544513 HMGXB3Q12766 1538 aa27.19■■□□□ 1.94
SEMA4D-224ENST00000544513 BAZ1AQ9NRL2 1556 aaPredicted RBP27.12■■□□□ 1.93
SEMA4D-224ENST00000544513 DNAJC5Q9H3Z4 198 aa27.08■■□□□ 1.93
SEMA4D-224ENST00000544513 CUX2O14529 1486 aa27.06■■□□□ 1.92
SEMA4D-224ENST00000544513 PEG3Q9GZU2 1588 aa27.05■■□□□ 1.92
SEMA4D-224ENST00000544513 ERCC6Q03468 1493 aa27.04■■□□□ 1.92
SEMA4D-224ENST00000544513 BAZ1BQ9UIG0 1483 aaKnown RBP27■■□□□ 1.91
SEMA4D-224ENST00000544513 NESP48681 1621 aa26.94■■□□□ 1.9
SEMA4D-224ENST00000544513 MROH2BQ7Z745 1585 aa26.92■■□□□ 1.9
SEMA4D-224ENST00000544513 LAMC3Q9Y6N6 1575 aa26.75■■□□□ 1.87
SEMA4D-224ENST00000544513 THOC2Q8NI27 1593 aaKnown RBP26.67■■□□□ 1.86
SEMA4D-224ENST00000544513 PDS5BQ9NTI5 1447 aa26.61■■□□□ 1.85
SEMA4D-224ENST00000544513 WIZO95785 1651 aa26.57■■□□□ 1.84
SEMA4D-224ENST00000544513 CADPSQ9ULU8 1353 aa26.57■■□□□ 1.84
SEMA4D-224ENST00000544513 KIF21AQ7Z4S6 1674 aa26.56■■□□□ 1.84
SEMA4D-224ENST00000544513 RSF1Q96T23 1441 aaPredicted RBP26.39■■□□□ 1.81
SEMA4D-224ENST00000544513 MRC2Q9UBG0 1479 aa26.37■■□□□ 1.81
SEMA4D-224ENST00000544513 WDR62O43379 1518 aa26.33■■□□□ 1.81
SEMA4D-224ENST00000544513 CFTRP13569 1480 aa26.27■■□□□ 1.8
SEMA4D-224ENST00000544513 TOP2AP11388 1531 aaKnown RBP26.26■■□□□ 1.79
SEMA4D-224ENST00000544513 CEP164Q9UPV0 1460 aa26.24■■□□□ 1.79
SEMA4D-224ENST00000544513 FANCD2Q9BXW9 1451 aa26.23■■□□□ 1.79
SEMA4D-224ENST00000544513 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
SEMA4D-224ENST00000544513 CCDC88BA6NC98 1476 aa25.98■■□□□ 1.75
SEMA4D-224ENST00000544513 PRDM2Q13029 1718 aa25.93■■□□□ 1.74
SEMA4D-224ENST00000544513 OSCARQ8IYS5 282 aa25.81■■□□□ 1.72
SEMA4D-224ENST00000544513 TRIM41Q8WV44 630 aa25.78■■□□□ 1.72
SEMA4D-224ENST00000544513 TOPBP1Q92547 1522 aa25.74■■□□□ 1.71
SEMA4D-224ENST00000544513 IFT140Q96RY7 1462 aa25.74■■□□□ 1.71
SEMA4D-224ENST00000544513 ZNF608Q9ULD9 1512 aaPredicted RBP25.71■■□□□ 1.71
SEMA4D-224ENST00000544513 ABCC8Q09428 1581 aa25.69■■□□□ 1.7
SEMA4D-224ENST00000544513 DNMBPQ6XZF7 1577 aa25.64■■□□□ 1.69
SEMA4D-224ENST00000544513 EIF4G3O43432 1585 aaKnown RBP25.53■■□□□ 1.68
SEMA4D-224ENST00000544513 TARBP1Q13395 1621 aaKnown RBP25.53■■□□□ 1.68
SEMA4D-224ENST00000544513 POLA1P09884 1462 aaPredicted RBP25.48■■□□□ 1.67
SEMA4D-224ENST00000544513 AQRO60306 1485 aaKnown RBP eCLIP25.47■■□□□ 1.67
SEMA4D-224ENST00000544513 RIMBP3CA6NJZ7 1639 aa25.45■■□□□ 1.66
SEMA4D-224ENST00000544513 RIMBP3BA6NNM3 1639 aa25.45■■□□□ 1.66
SEMA4D-224ENST00000544513 RIMBP3Q9UFD9 1639 aa25.45■■□□□ 1.66
SEMA4D-224ENST00000544513 ARHGEF11O15085 1522 aa25.38■■□□□ 1.65
SEMA4D-224ENST00000544513 RAD54L2Q9Y4B4 1467 aa25.38■■□□□ 1.65
SEMA4D-224ENST00000544513 SOGA1O94964 1423 aa25.37■■□□□ 1.65
SEMA4D-224ENST00000544513 CHD1O14646 1710 aa25.32■■□□□ 1.64
SEMA4D-224ENST00000544513 TDRD9Q8NDG6 1382 aaKnown RBP25.31■■□□□ 1.64
SEMA4D-224ENST00000544513 FGD5Q6ZNL6 1462 aa25.3■■□□□ 1.64
SEMA4D-224ENST00000544513 CUX1P39880 1505 aa25.3■■□□□ 1.64
SEMA4D-224ENST00000544513 WDR97A6NE52 1622 aa25.27■■□□□ 1.64
SEMA4D-224ENST00000544513 FBLN2P98095 1184 aa25.24■■□□□ 1.63
SEMA4D-224ENST00000544513 SNAPC4Q5SXM2 1469 aa25.19■■□□□ 1.62
SEMA4D-224ENST00000544513 CYB5RLQ6IPT4 315 aa25.18■■□□□ 1.62
SEMA4D-224ENST00000544513 MAGI1Q96QZ7 1491 aaPredicted RBP25.15■■□□□ 1.62
SEMA4D-224ENST00000544513 GRIN2BQ13224 1484 aa25.15■■□□□ 1.62
SEMA4D-224ENST00000544513 ARAP1Q96P48 1450 aa25.15■■□□□ 1.62
SEMA4D-224ENST00000544513 SUPT5HO00267 1087 aaKnown RBP25.12■■□□□ 1.61
SEMA4D-224ENST00000544513 CLASP1Q7Z460 1538 aa25.1■■□□□ 1.61
SEMA4D-224ENST00000544513 CHMP7Q8WUX9 453 aaPredicted RBP25.09■■□□□ 1.61
SEMA4D-224ENST00000544513 SYNJ2O15056 1496 aa25.07■■□□□ 1.6
SEMA4D-224ENST00000544513 GAPVD1Q14C86 1478 aa25.05■■□□□ 1.6
SEMA4D-224ENST00000544513 ABCA10Q8WWZ4 1543 aa25.05■■□□□ 1.6
SEMA4D-224ENST00000544513 SYNJ1O43426 1573 aa25.04■■□□□ 1.6
SEMA4D-224ENST00000544513 ABCA5Q8WWZ7 1642 aa25■■□□□ 1.59
SEMA4D-224ENST00000544513 PBRM1Q86U86 1689 aa24.99■■□□□ 1.59
SEMA4D-224ENST00000544513 WRNQ14191 1432 aaPredicted RBP eCLIP24.94■■□□□ 1.58
SEMA4D-224ENST00000544513 TOP2BQ02880 1626 aa24.89■■□□□ 1.57
SEMA4D-224ENST00000544513 BIVM-ERCC5R4GMW8 1640 aa24.87■■□□□ 1.57
SEMA4D-224ENST00000544513 TRHP20396 242 aaPredicted RBP24.85■■□□□ 1.57
SEMA4D-224ENST00000544513 GRIN2AQ12879 1464 aa24.82■■□□□ 1.56
SEMA4D-224ENST00000544513 ADAMTS12P58397 1594 aa24.8■■□□□ 1.56
SEMA4D-224ENST00000544513 NUP160Q12769 1436 aa24.77■■□□□ 1.56
SEMA4D-224ENST00000544513 FHAD1B1AJZ9 1412 aa24.74■■□□□ 1.55
SEMA4D-224ENST00000544513 ERICH3Q5RHP9 1530 aa24.73■■□□□ 1.55
SEMA4D-224ENST00000544513 CEP170Q5SW79 1584 aa24.72■■□□□ 1.55
SEMA4D-224ENST00000544513 ERCC6L2Q5T890 1561 aa24.69■■□□□ 1.54
SEMA4D-224ENST00000544513 SHROOM2Q13796 1616 aa24.64■■□□□ 1.54
SEMA4D-224ENST00000544513 PRG4Q92954 1404 aaPredicted RBP24.5■■□□□ 1.51
SEMA4D-224ENST00000544513 JPH4Q96JJ6 628 aa24.49■■□□□ 1.51
SEMA4D-224ENST00000544513 IGF1RP08069 1367 aa24.44■■□□□ 1.5
SEMA4D-224ENST00000544513 RUSC2Q8N2Y8 1516 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms