RNA–Protein interactions for RNA: ENST00000544432.5

VAMP1-208, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 3

Gene VAMP1, Length 759 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-208ENST00000544432 NISCHQ9Y2I1 1504 aa34.21■■■■□ 3.07
VAMP1-208ENST00000544432 CCDC180Q9P1Z9 1646 aa30.48■■■□□ 2.47
VAMP1-208ENST00000544432 ABCC9O60706 1549 aa30.04■■■□□ 2.4
VAMP1-208ENST00000544432 RB1CC1Q8TDY2 1594 aa28.83■■■□□ 2.21
VAMP1-208ENST00000544432 NACADO15069 1562 aa28.76■■■□□ 2.19
VAMP1-208ENST00000544432 DCAF8L2P0C7V8 631 aa28.64■■■□□ 2.18
VAMP1-208ENST00000544432 MYO15BQ96JP2 1530 aa28.58■■■□□ 2.17
VAMP1-208ENST00000544432 ZCCHC6Q5VYS8 1495 aaKnown RBP28.43■■■□□ 2.14
VAMP1-208ENST00000544432 DCAF1Q9Y4B6 1507 aa28.34■■■□□ 2.13
VAMP1-208ENST00000544432 UNC13AQ9UPW8 1703 aa28.06■■■□□ 2.08
VAMP1-208ENST00000544432 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
VAMP1-208ENST00000544432 BICRAQ9NZM4 1560 aa27.95■■■□□ 2.07
VAMP1-208ENST00000544432 DNAJC5BQ9UF47 199 aa27.85■■■□□ 2.05
VAMP1-208ENST00000544432 SCRIBQ14160 1630 aa27.74■■■□□ 2.03
VAMP1-208ENST00000544432 SHROOM4Q9ULL8 1493 aa27.72■■■□□ 2.03
VAMP1-208ENST00000544432 EIF4G1Q04637 1599 aaKnown RBP27.23■■□□□ 1.95
VAMP1-208ENST00000544432 CC2D2AQ9P2K1 1620 aa27.16■■□□□ 1.94
VAMP1-208ENST00000544432 CECR2Q9BXF3 1484 aa27.06■■□□□ 1.92
VAMP1-208ENST00000544432 NCAPD3P42695 1498 aa26.58■■□□□ 1.85
VAMP1-208ENST00000544432 SMARCA4P51532 1647 aa26.55■■□□□ 1.84
VAMP1-208ENST00000544432 ATAD2BQ9ULI0 1458 aa26.53■■□□□ 1.84
VAMP1-208ENST00000544432 BAZ1AQ9NRL2 1556 aaPredicted RBP26.52■■□□□ 1.84
VAMP1-208ENST00000544432 SMARCA2P51531 1590 aa26.47■■□□□ 1.83
VAMP1-208ENST00000544432 HMGXB3Q12766 1538 aa26.38■■□□□ 1.81
VAMP1-208ENST00000544432 PEG3Q9GZU2 1588 aa26.35■■□□□ 1.81
VAMP1-208ENST00000544432 MROH2BQ7Z745 1585 aa26.33■■□□□ 1.8
VAMP1-208ENST00000544432 BAZ1BQ9UIG0 1483 aaKnown RBP26.26■■□□□ 1.79
VAMP1-208ENST00000544432 RSF1Q96T23 1441 aaPredicted RBP25.98■■□□□ 1.75
VAMP1-208ENST00000544432 WIZO95785 1651 aa25.98■■□□□ 1.75
VAMP1-208ENST00000544432 ERCC6Q03468 1493 aa25.92■■□□□ 1.74
VAMP1-208ENST00000544432 NESP48681 1621 aa25.92■■□□□ 1.74
VAMP1-208ENST00000544432 LAMC3Q9Y6N6 1575 aa25.86■■□□□ 1.73
VAMP1-208ENST00000544432 CUX2O14529 1486 aa25.79■■□□□ 1.72
VAMP1-208ENST00000544432 CADPSQ9ULU8 1353 aa25.79■■□□□ 1.72
VAMP1-208ENST00000544432 TOP2AP11388 1531 aaKnown RBP25.74■■□□□ 1.71
VAMP1-208ENST00000544432 PDS5BQ9NTI5 1447 aa25.74■■□□□ 1.71
VAMP1-208ENST00000544432 THOC2Q8NI27 1593 aaKnown RBP25.57■■□□□ 1.68
VAMP1-208ENST00000544432 CFTRP13569 1480 aa25.57■■□□□ 1.68
VAMP1-208ENST00000544432 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
VAMP1-208ENST00000544432 CCDC88BA6NC98 1476 aa25.47■■□□□ 1.67
VAMP1-208ENST00000544432 MRC2Q9UBG0 1479 aa25.45■■□□□ 1.66
VAMP1-208ENST00000544432 FANCD2Q9BXW9 1451 aa25.44■■□□□ 1.66
VAMP1-208ENST00000544432 CEP164Q9UPV0 1460 aa25.42■■□□□ 1.66
VAMP1-208ENST00000544432 WDR62O43379 1518 aa25.37■■□□□ 1.65
VAMP1-208ENST00000544432 DNAJC5Q9H3Z4 198 aa25.33■■□□□ 1.65
VAMP1-208ENST00000544432 PRDM2Q13029 1718 aa25.23■■□□□ 1.63
VAMP1-208ENST00000544432 URB2Q14146 1524 aaKnown RBP25.19■■□□□ 1.62
VAMP1-208ENST00000544432 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
VAMP1-208ENST00000544432 ABCC8Q09428 1581 aa25.05■■□□□ 1.6
VAMP1-208ENST00000544432 TOPBP1Q92547 1522 aa25.01■■□□□ 1.59
VAMP1-208ENST00000544432 DNMBPQ6XZF7 1577 aa24.95■■□□□ 1.58
VAMP1-208ENST00000544432 IFT140Q96RY7 1462 aa24.94■■□□□ 1.58
VAMP1-208ENST00000544432 ZNF608Q9ULD9 1512 aaPredicted RBP24.81■■□□□ 1.56
VAMP1-208ENST00000544432 POLA1P09884 1462 aaPredicted RBP24.77■■□□□ 1.56
VAMP1-208ENST00000544432 TARBP1Q13395 1621 aaKnown RBP24.74■■□□□ 1.55
VAMP1-208ENST00000544432 CUX1P39880 1505 aa24.71■■□□□ 1.55
VAMP1-208ENST00000544432 OSCARQ8IYS5 282 aa24.71■■□□□ 1.55
VAMP1-208ENST00000544432 SOGA1O94964 1423 aa24.69■■□□□ 1.54
VAMP1-208ENST00000544432 FGD5Q6ZNL6 1462 aa24.66■■□□□ 1.54
VAMP1-208ENST00000544432 RAD54L2Q9Y4B4 1467 aa24.65■■□□□ 1.54
VAMP1-208ENST00000544432 EIF4G3O43432 1585 aaKnown RBP24.65■■□□□ 1.54
VAMP1-208ENST00000544432 AQRO60306 1485 aaKnown RBP eCLIP24.64■■□□□ 1.54
VAMP1-208ENST00000544432 WDR97A6NE52 1622 aa24.57■■□□□ 1.52
VAMP1-208ENST00000544432 TDRD9Q8NDG6 1382 aaKnown RBP24.56■■□□□ 1.52
VAMP1-208ENST00000544432 WRNQ14191 1432 aaPredicted RBP eCLIP24.49■■□□□ 1.51
VAMP1-208ENST00000544432 ABCA10Q8WWZ4 1543 aa24.46■■□□□ 1.51
VAMP1-208ENST00000544432 TOP2BQ02880 1626 aa24.44■■□□□ 1.5
VAMP1-208ENST00000544432 GRIN2BQ13224 1484 aa24.44■■□□□ 1.5
VAMP1-208ENST00000544432 BIVM-ERCC5R4GMW8 1640 aa24.42■■□□□ 1.5
VAMP1-208ENST00000544432 GAPVD1Q14C86 1478 aa24.39■■□□□ 1.5
VAMP1-208ENST00000544432 SNAPC4Q5SXM2 1469 aa24.39■■□□□ 1.5
VAMP1-208ENST00000544432 MAGI1Q96QZ7 1491 aaPredicted RBP24.39■■□□□ 1.5
VAMP1-208ENST00000544432 FBLN2P98095 1184 aa24.39■■□□□ 1.49
VAMP1-208ENST00000544432 SYNJ1O43426 1573 aa24.38■■□□□ 1.49
VAMP1-208ENST00000544432 CHD1O14646 1710 aa24.35■■□□□ 1.49
VAMP1-208ENST00000544432 CHMP7Q8WUX9 453 aaPredicted RBP24.33■■□□□ 1.49
VAMP1-208ENST00000544432 ABCA5Q8WWZ7 1642 aa24.32■■□□□ 1.48
VAMP1-208ENST00000544432 SYNJ2O15056 1496 aa24.3■■□□□ 1.48
VAMP1-208ENST00000544432 TRIM41Q8WV44 630 aa24.29■■□□□ 1.48
VAMP1-208ENST00000544432 PBRM1Q86U86 1689 aa24.26■■□□□ 1.47
VAMP1-208ENST00000544432 ARHGEF11O15085 1522 aa24.24■■□□□ 1.47
VAMP1-208ENST00000544432 RIMBP3CA6NJZ7 1639 aa24.24■■□□□ 1.47
VAMP1-208ENST00000544432 RIMBP3BA6NNM3 1639 aa24.24■■□□□ 1.47
VAMP1-208ENST00000544432 RIMBP3Q9UFD9 1639 aa24.24■■□□□ 1.47
VAMP1-208ENST00000544432 CLASP1Q7Z460 1538 aa24.17■■□□□ 1.46
VAMP1-208ENST00000544432 ERICH3Q5RHP9 1530 aa24.15■■□□□ 1.46
VAMP1-208ENST00000544432 FHAD1B1AJZ9 1412 aa24.12■■□□□ 1.45
VAMP1-208ENST00000544432 ADAMTS12P58397 1594 aa24.1■■□□□ 1.45
VAMP1-208ENST00000544432 GRIN2AQ12879 1464 aa24.09■■□□□ 1.45
VAMP1-208ENST00000544432 CYB5RLQ6IPT4 315 aa24.06■■□□□ 1.44
VAMP1-208ENST00000544432 NUP160Q12769 1436 aa24.03■■□□□ 1.44
VAMP1-208ENST00000544432 ARAP1Q96P48 1450 aa24.03■■□□□ 1.44
VAMP1-208ENST00000544432 KIF27Q86VH2 1401 aa24.01■■□□□ 1.43
VAMP1-208ENST00000544432 IGF1RP08069 1367 aa23.98■■□□□ 1.43
VAMP1-208ENST00000544432 CEP170Q5SW79 1584 aa23.95■■□□□ 1.42
VAMP1-208ENST00000544432 CUL7Q14999 1698 aa23.84■■□□□ 1.41
VAMP1-208ENST00000544432 SHROOM2Q13796 1616 aa23.84■■□□□ 1.41
VAMP1-208ENST00000544432 JPH4Q96JJ6 628 aa23.82■■□□□ 1.4
VAMP1-208ENST00000544432 CARMIL1Q5VZK9 1371 aa23.81■■□□□ 1.4
VAMP1-208ENST00000544432 ERCC6L2Q5T890 1561 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 198.6 ms