RNA–Protein interactions for RNA: ENST00000544344.5

CD4-212, Transcript of CD4 molecule, humanhuman

TSL 2

Gene CD4, Length 1,056 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-212ENST00000544344 NISCHQ9Y2I1 1504 aa39.6■■■■□ 3.93
CD4-212ENST00000544344 ABCC9O60706 1549 aa36.03■■■■□ 3.36
CD4-212ENST00000544344 CCDC180Q9P1Z9 1646 aa35.68■■■■□ 3.3
CD4-212ENST00000544344 DNAJC5BQ9UF47 199 aa34.2■■■■□ 3.07
CD4-212ENST00000544344 RB1CC1Q8TDY2 1594 aa34.11■■■■□ 3.05
CD4-212ENST00000544344 NACADO15069 1562 aa33.81■■■■□ 3
CD4-212ENST00000544344 PABPN1Q86U42 306 aaKnown RBP eCLIP33.48■■■□□ 2.95
CD4-212ENST00000544344 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
CD4-212ENST00000544344 UNC13AQ9UPW8 1703 aa33.42■■■□□ 2.94
CD4-212ENST00000544344 MYO15BQ96JP2 1530 aa33.25■■■□□ 2.91
CD4-212ENST00000544344 BICRAQ9NZM4 1560 aa33.23■■■□□ 2.91
CD4-212ENST00000544344 ZCCHC6Q5VYS8 1495 aaKnown RBP32.74■■■□□ 2.83
CD4-212ENST00000544344 DCAF1Q9Y4B6 1507 aa32.69■■■□□ 2.82
CD4-212ENST00000544344 SHROOM4Q9ULL8 1493 aa32.67■■■□□ 2.82
CD4-212ENST00000544344 CC2D2AQ9P2K1 1620 aa32.55■■■□□ 2.8
CD4-212ENST00000544344 CECR2Q9BXF3 1484 aa32.48■■■□□ 2.79
CD4-212ENST00000544344 SCRIBQ14160 1630 aa32.48■■■□□ 2.79
CD4-212ENST00000544344 EIF4G1Q04637 1599 aaKnown RBP32.39■■■□□ 2.78
CD4-212ENST00000544344 DNAJC5Q9H3Z4 198 aa31.61■■■□□ 2.65
CD4-212ENST00000544344 NCAPD3P42695 1498 aa31.25■■■□□ 2.59
CD4-212ENST00000544344 CUX2O14529 1486 aa31.2■■■□□ 2.58
CD4-212ENST00000544344 ATAD2BQ9ULI0 1458 aa31.09■■■□□ 2.57
CD4-212ENST00000544344 ERCC6Q03468 1493 aa31.08■■■□□ 2.57
CD4-212ENST00000544344 SMARCA4P51532 1647 aa30.97■■■□□ 2.55
CD4-212ENST00000544344 HMGXB3Q12766 1538 aa30.96■■■□□ 2.55
CD4-212ENST00000544344 SMARCA2P51531 1590 aa30.95■■■□□ 2.54
CD4-212ENST00000544344 NESP48681 1621 aa30.88■■■□□ 2.53
CD4-212ENST00000544344 BAZ1AQ9NRL2 1556 aaPredicted RBP30.73■■■□□ 2.51
CD4-212ENST00000544344 BAZ1BQ9UIG0 1483 aaKnown RBP30.72■■■□□ 2.51
CD4-212ENST00000544344 PEG3Q9GZU2 1588 aa30.69■■■□□ 2.5
CD4-212ENST00000544344 THOC2Q8NI27 1593 aaKnown RBP30.65■■■□□ 2.5
CD4-212ENST00000544344 LAMC3Q9Y6N6 1575 aa30.57■■■□□ 2.48
CD4-212ENST00000544344 MROH2BQ7Z745 1585 aa30.53■■■□□ 2.48
CD4-212ENST00000544344 KIF21AQ7Z4S6 1674 aa30.46■■■□□ 2.47
CD4-212ENST00000544344 PDS5BQ9NTI5 1447 aa30.37■■■□□ 2.45
CD4-212ENST00000544344 CADPSQ9ULU8 1353 aa30.25■■■□□ 2.43
CD4-212ENST00000544344 MRC2Q9UBG0 1479 aa30.16■■■□□ 2.42
CD4-212ENST00000544344 WDR62O43379 1518 aa30.13■■■□□ 2.41
CD4-212ENST00000544344 WIZO95785 1651 aa30.13■■■□□ 2.41
CD4-212ENST00000544344 TRIM41Q8WV44 630 aa30■■■□□ 2.39
CD4-212ENST00000544344 CEP164Q9UPV0 1460 aa29.95■■■□□ 2.39
CD4-212ENST00000544344 FANCD2Q9BXW9 1451 aa29.9■■■□□ 2.38
CD4-212ENST00000544344 CFTRP13569 1480 aa29.86■■■□□ 2.37
CD4-212ENST00000544344 RSF1Q96T23 1441 aaPredicted RBP29.75■■■□□ 2.35
CD4-212ENST00000544344 URB2Q14146 1524 aaKnown RBP29.72■■■□□ 2.35
CD4-212ENST00000544344 TOP2AP11388 1531 aaKnown RBP29.71■■■□□ 2.35
CD4-212ENST00000544344 OSCARQ8IYS5 282 aa29.68■■■□□ 2.34
CD4-212ENST00000544344 PRDM2Q13029 1718 aa29.51■■■□□ 2.32
CD4-212ENST00000544344 ZNF608Q9ULD9 1512 aaPredicted RBP29.41■■■□□ 2.3
CD4-212ENST00000544344 RIMBP3CA6NJZ7 1639 aa29.39■■■□□ 2.3
CD4-212ENST00000544344 RIMBP3BA6NNM3 1639 aa29.39■■■□□ 2.3
CD4-212ENST00000544344 RIMBP3Q9UFD9 1639 aa29.39■■■□□ 2.3
CD4-212ENST00000544344 CCDC88BA6NC98 1476 aa29.38■■■□□ 2.29
CD4-212ENST00000544344 IFT140Q96RY7 1462 aa29.37■■■□□ 2.29
CD4-212ENST00000544344 TOPBP1Q92547 1522 aa29.31■■■□□ 2.28
CD4-212ENST00000544344 ARHGEF11O15085 1522 aa29.25■■■□□ 2.27
CD4-212ENST00000544344 EIF4G3O43432 1585 aaKnown RBP29.21■■■□□ 2.27
CD4-212ENST00000544344 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
CD4-212ENST00000544344 DNMBPQ6XZF7 1577 aa29.16■■■□□ 2.26
CD4-212ENST00000544344 TARBP1Q13395 1621 aaKnown RBP29.12■■■□□ 2.25
CD4-212ENST00000544344 AQRO60306 1485 aaKnown RBP eCLIP29.08■■■□□ 2.25
CD4-212ENST00000544344 CHD1O14646 1710 aa29.07■■■□□ 2.24
CD4-212ENST00000544344 CYB5RLQ6IPT4 315 aa29.01■■■□□ 2.23
CD4-212ENST00000544344 POLA1P09884 1462 aaPredicted RBP28.99■■■□□ 2.23
CD4-212ENST00000544344 ARAP1Q96P48 1450 aa28.95■■■□□ 2.22
CD4-212ENST00000544344 RAD54L2Q9Y4B4 1467 aa28.9■■■□□ 2.22
CD4-212ENST00000544344 FBLN2P98095 1184 aa28.87■■■□□ 2.21
CD4-212ENST00000544344 TDRD9Q8NDG6 1382 aaKnown RBP28.83■■■□□ 2.21
CD4-212ENST00000544344 SOGA1O94964 1423 aa28.82■■■□□ 2.2
CD4-212ENST00000544344 SNAPC4Q5SXM2 1469 aa28.76■■■□□ 2.19
CD4-212ENST00000544344 FGD5Q6ZNL6 1462 aa28.75■■■□□ 2.19
CD4-212ENST00000544344 TRHP20396 242 aaPredicted RBP28.75■■■□□ 2.19
CD4-212ENST00000544344 CLASP1Q7Z460 1538 aa28.74■■■□□ 2.19
CD4-212ENST00000544344 WDR97A6NE52 1622 aa28.74■■■□□ 2.19
CD4-212ENST00000544344 CUX1P39880 1505 aa28.69■■■□□ 2.18
CD4-212ENST00000544344 MAGI1Q96QZ7 1491 aaPredicted RBP28.66■■■□□ 2.18
CD4-212ENST00000544344 SYNJ1O43426 1573 aa28.63■■■□□ 2.17
CD4-212ENST00000544344 GRIN2BQ13224 1484 aa28.61■■■□□ 2.17
CD4-212ENST00000544344 CHMP7Q8WUX9 453 aaPredicted RBP28.61■■■□□ 2.17
CD4-212ENST00000544344 SYNJ2O15056 1496 aa28.58■■■□□ 2.17
CD4-212ENST00000544344 PBRM1Q86U86 1689 aa28.5■■■□□ 2.15
CD4-212ENST00000544344 GAPVD1Q14C86 1478 aa28.47■■■□□ 2.15
CD4-212ENST00000544344 ABCA5Q8WWZ7 1642 aa28.43■■■□□ 2.14
CD4-212ENST00000544344 ABCA10Q8WWZ4 1543 aa28.41■■■□□ 2.14
CD4-212ENST00000544344 ERCC6L2Q5T890 1561 aa28.29■■■□□ 2.12
CD4-212ENST00000544344 GRIN2AQ12879 1464 aa28.27■■■□□ 2.12
CD4-212ENST00000544344 ADAMTS12P58397 1594 aa28.22■■■□□ 2.11
CD4-212ENST00000544344 CEP170Q5SW79 1584 aa28.21■■■□□ 2.11
CD4-212ENST00000544344 NUP160Q12769 1436 aa28.21■■■□□ 2.11
CD4-212ENST00000544344 WRNQ14191 1432 aaPredicted RBP eCLIP28.18■■■□□ 2.1
CD4-212ENST00000544344 AEBP2Q6ZN18 517 aaPredicted RBP28.15■■■□□ 2.1
CD4-212ENST00000544344 SHROOM2Q13796 1616 aa28.14■■■□□ 2.1
CD4-212ENST00000544344 BIVM-ERCC5R4GMW8 1640 aa28.13■■■□□ 2.09
CD4-212ENST00000544344 TOP2BQ02880 1626 aa28.11■■■□□ 2.09
CD4-212ENST00000544344 FHAD1B1AJZ9 1412 aa28.09■■■□□ 2.09
CD4-212ENST00000544344 SUPT5HO00267 1087 aaKnown RBP28.06■■■□□ 2.08
CD4-212ENST00000544344 ERICH3Q5RHP9 1530 aa28.03■■■□□ 2.08
CD4-212ENST00000544344 KIF13AQ9H1H9 1805 aa27.97■■■□□ 2.07
CD4-212ENST00000544344 PRG4Q92954 1404 aaPredicted RBP27.92■■■□□ 2.06
CD4-212ENST00000544344 JPH4Q96JJ6 628 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms