RNA–Protein interactions for RNA: ENST00000543941.1

C1RL-209, Transcript of complement C1r subcomponent like, humanhuman

TSL 3

Gene C1RL, Length 539 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C1RL-209ENST00000543941 NISCHQ9Y2I1 1504 aa28.63■■■□□ 2.17
C1RL-209ENST00000543941 CCDC180Q9P1Z9 1646 aa25.58■■□□□ 1.69
C1RL-209ENST00000543941 ABCC9O60706 1549 aa25.55■■□□□ 1.68
C1RL-209ENST00000543941 RB1CC1Q8TDY2 1594 aa24.27■■□□□ 1.48
C1RL-209ENST00000543941 NACADO15069 1562 aa24.14■■□□□ 1.45
C1RL-209ENST00000543941 DCAF8L2P0C7V8 631 aa24.07■■□□□ 1.44
C1RL-209ENST00000543941 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
C1RL-209ENST00000543941 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
C1RL-209ENST00000543941 MYO15BQ96JP2 1530 aa23.84■■□□□ 1.41
C1RL-209ENST00000543941 PABPN1Q86U42 306 aaKnown RBP eCLIP23.84■■□□□ 1.41
C1RL-209ENST00000543941 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
C1RL-209ENST00000543941 BICRAQ9NZM4 1560 aa23.73■■□□□ 1.39
C1RL-209ENST00000543941 DCAF1Q9Y4B6 1507 aa23.6■■□□□ 1.37
C1RL-209ENST00000543941 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
C1RL-209ENST00000543941 SHROOM4Q9ULL8 1493 aa23.18■■□□□ 1.3
C1RL-209ENST00000543941 CC2D2AQ9P2K1 1620 aa23.08■■□□□ 1.29
C1RL-209ENST00000543941 EIF4G1Q04637 1599 aaKnown RBP23.05■■□□□ 1.28
C1RL-209ENST00000543941 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
C1RL-209ENST00000543941 NCAPD3P42695 1498 aa22.34■■□□□ 1.17
C1RL-209ENST00000543941 ATAD2BQ9ULI0 1458 aa22.31■■□□□ 1.16
C1RL-209ENST00000543941 SMARCA4P51532 1647 aa22.31■■□□□ 1.16
C1RL-209ENST00000543941 SMARCA2P51531 1590 aa22.16■■□□□ 1.14
C1RL-209ENST00000543941 BAZ1AQ9NRL2 1556 aaPredicted RBP22.15■■□□□ 1.14
C1RL-209ENST00000543941 HMGXB3Q12766 1538 aa22.14■■□□□ 1.13
C1RL-209ENST00000543941 MROH2BQ7Z745 1585 aa22.12■■□□□ 1.13
C1RL-209ENST00000543941 PEG3Q9GZU2 1588 aa22.08■■□□□ 1.12
C1RL-209ENST00000543941 NESP48681 1621 aa22.04■■□□□ 1.12
C1RL-209ENST00000543941 BAZ1BQ9UIG0 1483 aaKnown RBP22.03■■□□□ 1.12
C1RL-209ENST00000543941 ERCC6Q03468 1493 aa21.92■■□□□ 1.1
C1RL-209ENST00000543941 CUX2O14529 1486 aa21.87■■□□□ 1.09
C1RL-209ENST00000543941 WIZO95785 1651 aa21.87■■□□□ 1.09
C1RL-209ENST00000543941 DNAJC5Q9H3Z4 198 aa21.82■■□□□ 1.08
C1RL-209ENST00000543941 LAMC3Q9Y6N6 1575 aa21.77■■□□□ 1.08
C1RL-209ENST00000543941 THOC2Q8NI27 1593 aaKnown RBP21.74■■□□□ 1.07
C1RL-209ENST00000543941 KIF21AQ7Z4S6 1674 aa21.73■■□□□ 1.07
C1RL-209ENST00000543941 RSF1Q96T23 1441 aaPredicted RBP21.67■■□□□ 1.06
C1RL-209ENST00000543941 CADPSQ9ULU8 1353 aa21.65■■□□□ 1.06
C1RL-209ENST00000543941 PDS5BQ9NTI5 1447 aa21.59■■□□□ 1.05
C1RL-209ENST00000543941 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
C1RL-209ENST00000543941 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.03
C1RL-209ENST00000543941 CFTRP13569 1480 aa21.44■■□□□ 1.02
C1RL-209ENST00000543941 WDR62O43379 1518 aa21.43■■□□□ 1.02
C1RL-209ENST00000543941 FANCD2Q9BXW9 1451 aa21.4■■□□□ 1.02
C1RL-209ENST00000543941 CEP164Q9UPV0 1460 aa21.37■■□□□ 1.01
C1RL-209ENST00000543941 CCDC88BA6NC98 1476 aa21.32■■□□□ 1
C1RL-209ENST00000543941 URB2Q14146 1524 aaKnown RBP21.29■■□□□ 1
C1RL-209ENST00000543941 PRDM2Q13029 1718 aa21.23■□□□□ 0.99
C1RL-209ENST00000543941 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
C1RL-209ENST00000543941 ZNF608Q9ULD9 1512 aaPredicted RBP21.03■□□□□ 0.96
C1RL-209ENST00000543941 IFT140Q96RY7 1462 aa20.94■□□□□ 0.94
C1RL-209ENST00000543941 DNMBPQ6XZF7 1577 aa20.93■□□□□ 0.94
C1RL-209ENST00000543941 OSCARQ8IYS5 282 aa20.9■□□□□ 0.94
C1RL-209ENST00000543941 TRIM41Q8WV44 630 aa20.88■□□□□ 0.93
C1RL-209ENST00000543941 TARBP1Q13395 1621 aaKnown RBP20.88■□□□□ 0.93
C1RL-209ENST00000543941 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
C1RL-209ENST00000543941 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
C1RL-209ENST00000543941 POLA1P09884 1462 aaPredicted RBP20.83■□□□□ 0.93
C1RL-209ENST00000543941 AQRO60306 1485 aaKnown RBP eCLIP20.82■□□□□ 0.92
C1RL-209ENST00000543941 RAD54L2Q9Y4B4 1467 aa20.81■□□□□ 0.92
C1RL-209ENST00000543941 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
C1RL-209ENST00000543941 CUX1P39880 1505 aa20.76■□□□□ 0.91
C1RL-209ENST00000543941 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
C1RL-209ENST00000543941 RIMBP3CA6NJZ7 1639 aa20.71■□□□□ 0.91
C1RL-209ENST00000543941 RIMBP3BA6NNM3 1639 aa20.71■□□□□ 0.91
C1RL-209ENST00000543941 RIMBP3Q9UFD9 1639 aa20.71■□□□□ 0.91
C1RL-209ENST00000543941 SOGA1O94964 1423 aa20.7■□□□□ 0.9
C1RL-209ENST00000543941 CHD1O14646 1710 aa20.7■□□□□ 0.9
C1RL-209ENST00000543941 TDRD9Q8NDG6 1382 aaKnown RBP20.7■□□□□ 0.9
C1RL-209ENST00000543941 ARHGEF11O15085 1522 aa20.63■□□□□ 0.89
C1RL-209ENST00000543941 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
C1RL-209ENST00000543941 SNAPC4Q5SXM2 1469 aa20.56■□□□□ 0.88
C1RL-209ENST00000543941 FBLN2P98095 1184 aa20.56■□□□□ 0.88
C1RL-209ENST00000543941 GRIN2BQ13224 1484 aa20.48■□□□□ 0.87
C1RL-209ENST00000543941 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
C1RL-209ENST00000543941 PBRM1Q86U86 1689 aa20.47■□□□□ 0.87
C1RL-209ENST00000543941 CLASP1Q7Z460 1538 aa20.47■□□□□ 0.87
C1RL-209ENST00000543941 ABCA10Q8WWZ4 1543 aa20.47■□□□□ 0.87
C1RL-209ENST00000543941 ABCA5Q8WWZ7 1642 aa20.45■□□□□ 0.87
C1RL-209ENST00000543941 GAPVD1Q14C86 1478 aa20.45■□□□□ 0.86
C1RL-209ENST00000543941 MAGI1Q96QZ7 1491 aaPredicted RBP20.45■□□□□ 0.86
C1RL-209ENST00000543941 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
C1RL-209ENST00000543941 SYNJ1O43426 1573 aa20.44■□□□□ 0.86
C1RL-209ENST00000543941 BIVM-ERCC5R4GMW8 1640 aa20.42■□□□□ 0.86
C1RL-209ENST00000543941 CHMP7Q8WUX9 453 aaPredicted RBP20.41■□□□□ 0.86
C1RL-209ENST00000543941 SYNJ2O15056 1496 aa20.41■□□□□ 0.86
C1RL-209ENST00000543941 TOP2BQ02880 1626 aa20.4■□□□□ 0.86
C1RL-209ENST00000543941 WRNQ14191 1432 aaPredicted RBP eCLIP20.37■□□□□ 0.85
C1RL-209ENST00000543941 ADAMTS12P58397 1594 aa20.27■□□□□ 0.84
C1RL-209ENST00000543941 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
C1RL-209ENST00000543941 ERCC6L2Q5T890 1561 aa20.25■□□□□ 0.83
C1RL-209ENST00000543941 CEP170Q5SW79 1584 aa20.24■□□□□ 0.83
C1RL-209ENST00000543941 NUP160Q12769 1436 aa20.2■□□□□ 0.82
C1RL-209ENST00000543941 FHAD1B1AJZ9 1412 aa20.18■□□□□ 0.82
C1RL-209ENST00000543941 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
C1RL-209ENST00000543941 TRHP20396 242 aaPredicted RBP20.12■□□□□ 0.81
C1RL-209ENST00000543941 SHROOM2Q13796 1616 aa20.12■□□□□ 0.81
C1RL-209ENST00000543941 IGF1RP08069 1367 aa20.03■□□□□ 0.8
C1RL-209ENST00000543941 RUSC2Q8N2Y8 1516 aa19.98■□□□□ 0.79
C1RL-209ENST00000543941 JPH4Q96JJ6 628 aa19.98■□□□□ 0.79
C1RL-209ENST00000543941 PRG4Q92954 1404 aaPredicted RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms