RNA–Protein interactions for RNA: ENST00000543854.5

SPPL3-208, Transcript of signal peptide peptidase like 3, humanhuman

TSL 5

Gene SPPL3, Length 508 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPPL3-208ENST00000543854 NISCHQ9Y2I1 1504 aa46.9■■■■■ 5.1
SPPL3-208ENST00000543854 CCDC180Q9P1Z9 1646 aa41.9■■■■■ 4.3
SPPL3-208ENST00000543854 ABCC9O60706 1549 aa41.16■■■■■ 4.18
SPPL3-208ENST00000543854 RB1CC1Q8TDY2 1594 aa39.53■■■■□ 3.92
SPPL3-208ENST00000543854 NACADO15069 1562 aa39.41■■■■□ 3.9
SPPL3-208ENST00000543854 DCAF8L2P0C7V8 631 aa39.2■■■■□ 3.87
SPPL3-208ENST00000543854 MYO15BQ96JP2 1530 aa39.08■■■■□ 3.85
SPPL3-208ENST00000543854 ZCCHC6Q5VYS8 1495 aaKnown RBP39.05■■■■□ 3.84
SPPL3-208ENST00000543854 DCAF1Q9Y4B6 1507 aa38.82■■■■□ 3.8
SPPL3-208ENST00000543854 UNC13AQ9UPW8 1703 aa38.63■■■■□ 3.78
SPPL3-208ENST00000543854 PABPN1Q86U42 306 aaKnown RBP eCLIP38.35■■■■□ 3.73
SPPL3-208ENST00000543854 BICRAQ9NZM4 1560 aa38.3■■■■□ 3.72
SPPL3-208ENST00000543854 SCRIBQ14160 1630 aa38.18■■■■□ 3.7
SPPL3-208ENST00000543854 SHROOM4Q9ULL8 1493 aa37.95■■■■□ 3.67
SPPL3-208ENST00000543854 DNAJC5BQ9UF47 199 aa37.89■■■■□ 3.66
SPPL3-208ENST00000543854 EIF4G1Q04637 1599 aaKnown RBP37.34■■■■□ 3.57
SPPL3-208ENST00000543854 CC2D2AQ9P2K1 1620 aa37.25■■■■□ 3.55
SPPL3-208ENST00000543854 CECR2Q9BXF3 1484 aa37.02■■■■□ 3.52
SPPL3-208ENST00000543854 SMARCA4P51532 1647 aa36.48■■■■□ 3.43
SPPL3-208ENST00000543854 BAZ1AQ9NRL2 1556 aaPredicted RBP36.41■■■■□ 3.42
SPPL3-208ENST00000543854 NCAPD3P42695 1498 aa36.31■■■■□ 3.4
SPPL3-208ENST00000543854 SMARCA2P51531 1590 aa36.31■■■■□ 3.4
SPPL3-208ENST00000543854 ATAD2BQ9ULI0 1458 aa36.31■■■■□ 3.4
SPPL3-208ENST00000543854 HMGXB3Q12766 1538 aa36.18■■■■□ 3.38
SPPL3-208ENST00000543854 MROH2BQ7Z745 1585 aa36.13■■■■□ 3.37
SPPL3-208ENST00000543854 PEG3Q9GZU2 1588 aa36.13■■■■□ 3.37
SPPL3-208ENST00000543854 BAZ1BQ9UIG0 1483 aaKnown RBP36.04■■■■□ 3.36
SPPL3-208ENST00000543854 WIZO95785 1651 aa35.75■■■■□ 3.31
SPPL3-208ENST00000543854 RSF1Q96T23 1441 aaPredicted RBP35.6■■■■□ 3.29
SPPL3-208ENST00000543854 ERCC6Q03468 1493 aa35.54■■■■□ 3.28
SPPL3-208ENST00000543854 NESP48681 1621 aa35.53■■■■□ 3.28
SPPL3-208ENST00000543854 LAMC3Q9Y6N6 1575 aa35.47■■■■□ 3.27
SPPL3-208ENST00000543854 TOP2AP11388 1531 aaKnown RBP35.39■■■■□ 3.26
SPPL3-208ENST00000543854 CUX2O14529 1486 aa35.26■■■■□ 3.23
SPPL3-208ENST00000543854 CADPSQ9ULU8 1353 aa35.24■■■■□ 3.23
SPPL3-208ENST00000543854 PDS5BQ9NTI5 1447 aa35.2■■■■□ 3.23
SPPL3-208ENST00000543854 KIF21AQ7Z4S6 1674 aa35.16■■■■□ 3.22
SPPL3-208ENST00000543854 THOC2Q8NI27 1593 aaKnown RBP35.12■■■■□ 3.21
SPPL3-208ENST00000543854 CFTRP13569 1480 aa35■■■■□ 3.19
SPPL3-208ENST00000543854 CCDC88BA6NC98 1476 aa34.9■■■■□ 3.18
SPPL3-208ENST00000543854 CEP164Q9UPV0 1460 aa34.89■■■■□ 3.18
SPPL3-208ENST00000543854 FANCD2Q9BXW9 1451 aa34.88■■■■□ 3.17
SPPL3-208ENST00000543854 MRC2Q9UBG0 1479 aa34.88■■■■□ 3.17
SPPL3-208ENST00000543854 PRDM2Q13029 1718 aa34.81■■■■□ 3.16
SPPL3-208ENST00000543854 WDR62O43379 1518 aa34.79■■■■□ 3.16
SPPL3-208ENST00000543854 URB2Q14146 1524 aaKnown RBP34.53■■■■□ 3.12
SPPL3-208ENST00000543854 SUPT5HO00267 1087 aaKnown RBP34.47■■■■□ 3.11
SPPL3-208ENST00000543854 DNAJC5Q9H3Z4 198 aa34.36■■■■□ 3.09
SPPL3-208ENST00000543854 TOPBP1Q92547 1522 aa34.29■■■■□ 3.08
SPPL3-208ENST00000543854 ABCC8Q09428 1581 aa34.28■■■■□ 3.08
SPPL3-208ENST00000543854 DNMBPQ6XZF7 1577 aa34.26■■■■□ 3.07
SPPL3-208ENST00000543854 IFT140Q96RY7 1462 aa34.14■■■■□ 3.06
SPPL3-208ENST00000543854 POLA1P09884 1462 aaPredicted RBP33.98■■■■□ 3.03
SPPL3-208ENST00000543854 ZNF608Q9ULD9 1512 aaPredicted RBP33.98■■■■□ 3.03
SPPL3-208ENST00000543854 TARBP1Q13395 1621 aaKnown RBP33.94■■■■□ 3.02
SPPL3-208ENST00000543854 CUX1P39880 1505 aa33.93■■■■□ 3.02
SPPL3-208ENST00000543854 EIF4G3O43432 1585 aaKnown RBP33.91■■■■□ 3.02
SPPL3-208ENST00000543854 FGD5Q6ZNL6 1462 aa33.87■■■■□ 3.01
SPPL3-208ENST00000543854 SOGA1O94964 1423 aa33.8■■■■□ 3
SPPL3-208ENST00000543854 RAD54L2Q9Y4B4 1467 aa33.8■■■■□ 3
SPPL3-208ENST00000543854 AQRO60306 1485 aaKnown RBP eCLIP33.74■■■□□ 2.99
SPPL3-208ENST00000543854 WDR97A6NE52 1622 aa33.71■■■□□ 2.99
SPPL3-208ENST00000543854 OSCARQ8IYS5 282 aa33.65■■■□□ 2.98
SPPL3-208ENST00000543854 TDRD9Q8NDG6 1382 aaKnown RBP33.62■■■□□ 2.97
SPPL3-208ENST00000543854 WRNQ14191 1432 aaPredicted RBP eCLIP33.62■■■□□ 2.97
SPPL3-208ENST00000543854 BIVM-ERCC5R4GMW8 1640 aa33.61■■■□□ 2.97
SPPL3-208ENST00000543854 TOP2BQ02880 1626 aa33.6■■■□□ 2.97
SPPL3-208ENST00000543854 SYNJ1O43426 1573 aa33.56■■■□□ 2.96
SPPL3-208ENST00000543854 CHD1O14646 1710 aa33.53■■■□□ 2.96
SPPL3-208ENST00000543854 ABCA10Q8WWZ4 1543 aa33.53■■■□□ 2.96
SPPL3-208ENST00000543854 GRIN2BQ13224 1484 aa33.48■■■□□ 2.95
SPPL3-208ENST00000543854 SNAPC4Q5SXM2 1469 aa33.48■■■□□ 2.95
SPPL3-208ENST00000543854 ABCA5Q8WWZ7 1642 aa33.46■■■□□ 2.95
SPPL3-208ENST00000543854 PBRM1Q86U86 1689 aa33.45■■■□□ 2.94
SPPL3-208ENST00000543854 MAGI1Q96QZ7 1491 aaPredicted RBP33.44■■■□□ 2.94
SPPL3-208ENST00000543854 GAPVD1Q14C86 1478 aa33.44■■■□□ 2.94
SPPL3-208ENST00000543854 FBLN2P98095 1184 aa33.38■■■□□ 2.93
SPPL3-208ENST00000543854 SYNJ2O15056 1496 aa33.3■■■□□ 2.92
SPPL3-208ENST00000543854 CHMP7Q8WUX9 453 aaPredicted RBP33.25■■■□□ 2.91
SPPL3-208ENST00000543854 RIMBP3CA6NJZ7 1639 aa33.23■■■□□ 2.91
SPPL3-208ENST00000543854 RIMBP3BA6NNM3 1639 aa33.23■■■□□ 2.91
SPPL3-208ENST00000543854 RIMBP3Q9UFD9 1639 aa33.23■■■□□ 2.91
SPPL3-208ENST00000543854 ARHGEF11O15085 1522 aa33.19■■■□□ 2.9
SPPL3-208ENST00000543854 ADAMTS12P58397 1594 aa33.17■■■□□ 2.9
SPPL3-208ENST00000543854 TRIM41Q8WV44 630 aa33.16■■■□□ 2.9
SPPL3-208ENST00000543854 CLASP1Q7Z460 1538 aa33.14■■■□□ 2.9
SPPL3-208ENST00000543854 ERICH3Q5RHP9 1530 aa33.13■■■□□ 2.89
SPPL3-208ENST00000543854 GRIN2AQ12879 1464 aa33.05■■■□□ 2.88
SPPL3-208ENST00000543854 FHAD1B1AJZ9 1412 aa33.04■■■□□ 2.88
SPPL3-208ENST00000543854 KIF27Q86VH2 1401 aa32.94■■■□□ 2.86
SPPL3-208ENST00000543854 CEP170Q5SW79 1584 aa32.92■■■□□ 2.86
SPPL3-208ENST00000543854 NUP160Q12769 1436 aa32.9■■■□□ 2.86
SPPL3-208ENST00000543854 ARAP1Q96P48 1450 aa32.9■■■□□ 2.86
SPPL3-208ENST00000543854 CUL7Q14999 1698 aa32.82■■■□□ 2.84
SPPL3-208ENST00000543854 CYB5RLQ6IPT4 315 aa32.81■■■□□ 2.84
SPPL3-208ENST00000543854 IGF1RP08069 1367 aa32.76■■■□□ 2.83
SPPL3-208ENST00000543854 SHROOM2Q13796 1616 aa32.72■■■□□ 2.83
SPPL3-208ENST00000543854 RUSC2Q8N2Y8 1516 aa32.69■■■□□ 2.82
SPPL3-208ENST00000543854 ERCC6L2Q5T890 1561 aa32.62■■■□□ 2.81
SPPL3-208ENST00000543854 CARMIL1Q5VZK9 1371 aa32.58■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms