RNA–Protein interactions for RNA: ENST00000543590.1

VPS37B-204, Transcript of VPS37B, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS37B, Length 1,457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS37B-204ENST00000543590 NISCHQ9Y2I1 1504 aa35.16■■■■□ 3.22
VPS37B-204ENST00000543590 CCDC180Q9P1Z9 1646 aa31.35■■■□□ 2.61
VPS37B-204ENST00000543590 ABCC9O60706 1549 aa30.99■■■□□ 2.55
VPS37B-204ENST00000543590 RB1CC1Q8TDY2 1594 aa29.66■■■□□ 2.34
VPS37B-204ENST00000543590 NACADO15069 1562 aa29.56■■■□□ 2.32
VPS37B-204ENST00000543590 DCAF8L2P0C7V8 631 aa29.54■■■□□ 2.32
VPS37B-204ENST00000543590 MYO15BQ96JP2 1530 aa29.28■■■□□ 2.28
VPS37B-204ENST00000543590 ZCCHC6Q5VYS8 1495 aaKnown RBP29.22■■■□□ 2.27
VPS37B-204ENST00000543590 DCAF1Q9Y4B6 1507 aa29.06■■■□□ 2.24
VPS37B-204ENST00000543590 UNC13AQ9UPW8 1703 aa28.97■■■□□ 2.23
VPS37B-204ENST00000543590 PABPN1Q86U42 306 aaKnown RBP eCLIP28.94■■■□□ 2.22
VPS37B-204ENST00000543590 BICRAQ9NZM4 1560 aa28.79■■■□□ 2.2
VPS37B-204ENST00000543590 DNAJC5BQ9UF47 199 aa28.74■■■□□ 2.19
VPS37B-204ENST00000543590 SCRIBQ14160 1630 aa28.6■■■□□ 2.17
VPS37B-204ENST00000543590 SHROOM4Q9ULL8 1493 aa28.43■■■□□ 2.14
VPS37B-204ENST00000543590 EIF4G1Q04637 1599 aaKnown RBP28.04■■■□□ 2.08
VPS37B-204ENST00000543590 CC2D2AQ9P2K1 1620 aa28■■■□□ 2.07
VPS37B-204ENST00000543590 CECR2Q9BXF3 1484 aa27.87■■■□□ 2.05
VPS37B-204ENST00000543590 SMARCA4P51532 1647 aa27.33■■□□□ 1.96
VPS37B-204ENST00000543590 NCAPD3P42695 1498 aa27.3■■□□□ 1.96
VPS37B-204ENST00000543590 ATAD2BQ9ULI0 1458 aa27.27■■□□□ 1.96
VPS37B-204ENST00000543590 BAZ1AQ9NRL2 1556 aaPredicted RBP27.26■■□□□ 1.95
VPS37B-204ENST00000543590 SMARCA2P51531 1590 aa27.21■■□□□ 1.95
VPS37B-204ENST00000543590 HMGXB3Q12766 1538 aa27.11■■□□□ 1.93
VPS37B-204ENST00000543590 MROH2BQ7Z745 1585 aa27.1■■□□□ 1.93
VPS37B-204ENST00000543590 PEG3Q9GZU2 1588 aa27.06■■□□□ 1.92
VPS37B-204ENST00000543590 BAZ1BQ9UIG0 1483 aaKnown RBP27.02■■□□□ 1.92
VPS37B-204ENST00000543590 WIZO95785 1651 aa26.78■■□□□ 1.88
VPS37B-204ENST00000543590 NESP48681 1621 aa26.74■■□□□ 1.87
VPS37B-204ENST00000543590 ERCC6Q03468 1493 aa26.72■■□□□ 1.87
VPS37B-204ENST00000543590 RSF1Q96T23 1441 aaPredicted RBP26.7■■□□□ 1.86
VPS37B-204ENST00000543590 LAMC3Q9Y6N6 1575 aa26.6■■□□□ 1.85
VPS37B-204ENST00000543590 CUX2O14529 1486 aa26.53■■□□□ 1.84
VPS37B-204ENST00000543590 CADPSQ9ULU8 1353 aa26.49■■□□□ 1.83
VPS37B-204ENST00000543590 TOP2AP11388 1531 aaKnown RBP26.47■■□□□ 1.83
VPS37B-204ENST00000543590 PDS5BQ9NTI5 1447 aa26.45■■□□□ 1.82
VPS37B-204ENST00000543590 KIF21AQ7Z4S6 1674 aa26.38■■□□□ 1.81
VPS37B-204ENST00000543590 THOC2Q8NI27 1593 aaKnown RBP26.36■■□□□ 1.81
VPS37B-204ENST00000543590 CFTRP13569 1480 aa26.27■■□□□ 1.8
VPS37B-204ENST00000543590 MRC2Q9UBG0 1479 aa26.2■■□□□ 1.78
VPS37B-204ENST00000543590 CCDC88BA6NC98 1476 aa26.18■■□□□ 1.78
VPS37B-204ENST00000543590 FANCD2Q9BXW9 1451 aa26.18■■□□□ 1.78
VPS37B-204ENST00000543590 CEP164Q9UPV0 1460 aa26.17■■□□□ 1.78
VPS37B-204ENST00000543590 WDR62O43379 1518 aa26.1■■□□□ 1.77
VPS37B-204ENST00000543590 DNAJC5Q9H3Z4 198 aa26.1■■□□□ 1.77
VPS37B-204ENST00000543590 PRDM2Q13029 1718 aa25.99■■□□□ 1.75
VPS37B-204ENST00000543590 URB2Q14146 1524 aaKnown RBP25.95■■□□□ 1.74
VPS37B-204ENST00000543590 SUPT5HO00267 1087 aaKnown RBP25.84■■□□□ 1.73
VPS37B-204ENST00000543590 TOPBP1Q92547 1522 aa25.74■■□□□ 1.71
VPS37B-204ENST00000543590 ABCC8Q09428 1581 aa25.7■■□□□ 1.71
VPS37B-204ENST00000543590 DNMBPQ6XZF7 1577 aa25.66■■□□□ 1.7
VPS37B-204ENST00000543590 IFT140Q96RY7 1462 aa25.64■■□□□ 1.69
VPS37B-204ENST00000543590 ZNF608Q9ULD9 1512 aaPredicted RBP25.55■■□□□ 1.68
VPS37B-204ENST00000543590 POLA1P09884 1462 aaPredicted RBP25.49■■□□□ 1.67
VPS37B-204ENST00000543590 TARBP1Q13395 1621 aaKnown RBP25.46■■□□□ 1.67
VPS37B-204ENST00000543590 CUX1P39880 1505 aa25.44■■□□□ 1.66
VPS37B-204ENST00000543590 OSCARQ8IYS5 282 aa25.42■■□□□ 1.66
VPS37B-204ENST00000543590 EIF4G3O43432 1585 aaKnown RBP25.42■■□□□ 1.66
VPS37B-204ENST00000543590 SOGA1O94964 1423 aa25.4■■□□□ 1.66
VPS37B-204ENST00000543590 RAD54L2Q9Y4B4 1467 aa25.4■■□□□ 1.66
VPS37B-204ENST00000543590 FGD5Q6ZNL6 1462 aa25.39■■□□□ 1.66
VPS37B-204ENST00000543590 AQRO60306 1485 aaKnown RBP eCLIP25.38■■□□□ 1.65
VPS37B-204ENST00000543590 TDRD9Q8NDG6 1382 aaKnown RBP25.3■■□□□ 1.64
VPS37B-204ENST00000543590 WDR97A6NE52 1622 aa25.22■■□□□ 1.63
VPS37B-204ENST00000543590 WRNQ14191 1432 aaPredicted RBP eCLIP25.17■■□□□ 1.62
VPS37B-204ENST00000543590 FBLN2P98095 1184 aa25.15■■□□□ 1.62
VPS37B-204ENST00000543590 CHD1O14646 1710 aa25.15■■□□□ 1.62
VPS37B-204ENST00000543590 TOP2BQ02880 1626 aa25.13■■□□□ 1.61
VPS37B-204ENST00000543590 SNAPC4Q5SXM2 1469 aa25.13■■□□□ 1.61
VPS37B-204ENST00000543590 ABCA10Q8WWZ4 1543 aa25.12■■□□□ 1.61
VPS37B-204ENST00000543590 GRIN2BQ13224 1484 aa25.12■■□□□ 1.61
VPS37B-204ENST00000543590 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
VPS37B-204ENST00000543590 BIVM-ERCC5R4GMW8 1640 aa25.11■■□□□ 1.61
VPS37B-204ENST00000543590 SYNJ1O43426 1573 aa25.11■■□□□ 1.61
VPS37B-204ENST00000543590 GAPVD1Q14C86 1478 aa25.09■■□□□ 1.61
VPS37B-204ENST00000543590 MAGI1Q96QZ7 1491 aaPredicted RBP25.08■■□□□ 1.6
VPS37B-204ENST00000543590 ABCA5Q8WWZ7 1642 aa25.03■■□□□ 1.6
VPS37B-204ENST00000543590 CHMP7Q8WUX9 453 aaPredicted RBP25.03■■□□□ 1.6
VPS37B-204ENST00000543590 PBRM1Q86U86 1689 aa25.02■■□□□ 1.6
VPS37B-204ENST00000543590 RIMBP3CA6NJZ7 1639 aa25.01■■□□□ 1.59
VPS37B-204ENST00000543590 RIMBP3BA6NNM3 1639 aa25.01■■□□□ 1.59
VPS37B-204ENST00000543590 RIMBP3Q9UFD9 1639 aa25.01■■□□□ 1.59
VPS37B-204ENST00000543590 SYNJ2O15056 1496 aa24.99■■□□□ 1.59
VPS37B-204ENST00000543590 ARHGEF11O15085 1522 aa24.98■■□□□ 1.59
VPS37B-204ENST00000543590 CLASP1Q7Z460 1538 aa24.88■■□□□ 1.57
VPS37B-204ENST00000543590 ADAMTS12P58397 1594 aa24.82■■□□□ 1.56
VPS37B-204ENST00000543590 ERICH3Q5RHP9 1530 aa24.82■■□□□ 1.56
VPS37B-204ENST00000543590 CYB5RLQ6IPT4 315 aa24.81■■□□□ 1.56
VPS37B-204ENST00000543590 GRIN2AQ12879 1464 aa24.8■■□□□ 1.56
VPS37B-204ENST00000543590 FHAD1B1AJZ9 1412 aa24.79■■□□□ 1.56
VPS37B-204ENST00000543590 ARAP1Q96P48 1450 aa24.77■■□□□ 1.56
VPS37B-204ENST00000543590 NUP160Q12769 1436 aa24.7■■□□□ 1.55
VPS37B-204ENST00000543590 CEP170Q5SW79 1584 aa24.68■■□□□ 1.54
VPS37B-204ENST00000543590 KIF27Q86VH2 1401 aa24.66■■□□□ 1.54
VPS37B-204ENST00000543590 IGF1RP08069 1367 aa24.62■■□□□ 1.53
VPS37B-204ENST00000543590 SHROOM2Q13796 1616 aa24.53■■□□□ 1.52
VPS37B-204ENST00000543590 ERCC6L2Q5T890 1561 aa24.53■■□□□ 1.52
VPS37B-204ENST00000543590 CUL7Q14999 1698 aa24.52■■□□□ 1.52
VPS37B-204ENST00000543590 JPH4Q96JJ6 628 aa24.48■■□□□ 1.51
VPS37B-204ENST00000543590 CARMIL1Q5VZK9 1371 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms