RNA–Protein interactions for RNA: ENST00000543585.1

SCNN1A-220, Transcript of sodium channel epithelial 1 alpha subunit, humanhuman

TSL 4

Gene SCNN1A, Length 554 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCNN1A-220ENST00000543585 NISCHQ9Y2I1 1504 aa39■■■■□ 3.83
SCNN1A-220ENST00000543585 CCDC180Q9P1Z9 1646 aa34.81■■■■□ 3.16
SCNN1A-220ENST00000543585 ABCC9O60706 1549 aa34.15■■■■□ 3.06
SCNN1A-220ENST00000543585 RB1CC1Q8TDY2 1594 aa32.77■■■□□ 2.84
SCNN1A-220ENST00000543585 NACADO15069 1562 aa32.68■■■□□ 2.82
SCNN1A-220ENST00000543585 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
SCNN1A-220ENST00000543585 ZCCHC6Q5VYS8 1495 aaKnown RBP32.47■■■□□ 2.79
SCNN1A-220ENST00000543585 MYO15BQ96JP2 1530 aa32.41■■■□□ 2.78
SCNN1A-220ENST00000543585 UNC13AQ9UPW8 1703 aa32.29■■■□□ 2.76
SCNN1A-220ENST00000543585 DCAF1Q9Y4B6 1507 aa32.23■■■□□ 2.75
SCNN1A-220ENST00000543585 BICRAQ9NZM4 1560 aa31.9■■■□□ 2.7
SCNN1A-220ENST00000543585 PABPN1Q86U42 306 aaKnown RBP eCLIP31.85■■■□□ 2.69
SCNN1A-220ENST00000543585 SCRIBQ14160 1630 aa31.75■■■□□ 2.67
SCNN1A-220ENST00000543585 DNAJC5BQ9UF47 199 aa31.55■■■□□ 2.64
SCNN1A-220ENST00000543585 SHROOM4Q9ULL8 1493 aa31.38■■■□□ 2.61
SCNN1A-220ENST00000543585 EIF4G1Q04637 1599 aaKnown RBP31■■■□□ 2.55
SCNN1A-220ENST00000543585 CC2D2AQ9P2K1 1620 aa30.95■■■□□ 2.54
SCNN1A-220ENST00000543585 CECR2Q9BXF3 1484 aa30.68■■■□□ 2.5
SCNN1A-220ENST00000543585 SMARCA4P51532 1647 aa30.35■■■□□ 2.45
SCNN1A-220ENST00000543585 BAZ1AQ9NRL2 1556 aaPredicted RBP30.21■■■□□ 2.43
SCNN1A-220ENST00000543585 ATAD2BQ9ULI0 1458 aa30.16■■■□□ 2.42
SCNN1A-220ENST00000543585 NCAPD3P42695 1498 aa30.14■■■□□ 2.42
SCNN1A-220ENST00000543585 MROH2BQ7Z745 1585 aa30.1■■■□□ 2.41
SCNN1A-220ENST00000543585 SMARCA2P51531 1590 aa30.09■■■□□ 2.41
SCNN1A-220ENST00000543585 PEG3Q9GZU2 1588 aa30.03■■■□□ 2.4
SCNN1A-220ENST00000543585 HMGXB3Q12766 1538 aa30.01■■■□□ 2.4
SCNN1A-220ENST00000543585 BAZ1BQ9UIG0 1483 aaKnown RBP29.87■■■□□ 2.37
SCNN1A-220ENST00000543585 WIZO95785 1651 aa29.82■■■□□ 2.36
SCNN1A-220ENST00000543585 RSF1Q96T23 1441 aaPredicted RBP29.63■■■□□ 2.33
SCNN1A-220ENST00000543585 NESP48681 1621 aa29.56■■■□□ 2.32
SCNN1A-220ENST00000543585 TOP2AP11388 1531 aaKnown RBP29.4■■■□□ 2.3
SCNN1A-220ENST00000543585 LAMC3Q9Y6N6 1575 aa29.4■■■□□ 2.3
SCNN1A-220ENST00000543585 ERCC6Q03468 1493 aa29.37■■■□□ 2.29
SCNN1A-220ENST00000543585 KIF21AQ7Z4S6 1674 aa29.29■■■□□ 2.28
SCNN1A-220ENST00000543585 CADPSQ9ULU8 1353 aa29.23■■■□□ 2.27
SCNN1A-220ENST00000543585 THOC2Q8NI27 1593 aaKnown RBP29.19■■■□□ 2.26
SCNN1A-220ENST00000543585 CUX2O14529 1486 aa29.16■■■□□ 2.26
SCNN1A-220ENST00000543585 PDS5BQ9NTI5 1447 aa29.12■■■□□ 2.25
SCNN1A-220ENST00000543585 CFTRP13569 1480 aa29.06■■■□□ 2.24
SCNN1A-220ENST00000543585 CCDC88BA6NC98 1476 aa29.05■■■□□ 2.24
SCNN1A-220ENST00000543585 PRDM2Q13029 1718 aa29.02■■■□□ 2.24
SCNN1A-220ENST00000543585 FANCD2Q9BXW9 1451 aa28.93■■■□□ 2.22
SCNN1A-220ENST00000543585 MRC2Q9UBG0 1479 aa28.9■■■□□ 2.22
SCNN1A-220ENST00000543585 CEP164Q9UPV0 1460 aa28.9■■■□□ 2.22
SCNN1A-220ENST00000543585 WDR62O43379 1518 aa28.85■■■□□ 2.21
SCNN1A-220ENST00000543585 URB2Q14146 1524 aaKnown RBP28.71■■■□□ 2.19
SCNN1A-220ENST00000543585 SUPT5HO00267 1087 aaKnown RBP28.68■■■□□ 2.18
SCNN1A-220ENST00000543585 TOPBP1Q92547 1522 aa28.48■■■□□ 2.15
SCNN1A-220ENST00000543585 DNAJC5Q9H3Z4 198 aa28.44■■■□□ 2.14
SCNN1A-220ENST00000543585 DNMBPQ6XZF7 1577 aa28.44■■■□□ 2.14
SCNN1A-220ENST00000543585 ABCC8Q09428 1581 aa28.37■■■□□ 2.13
SCNN1A-220ENST00000543585 IFT140Q96RY7 1462 aa28.28■■■□□ 2.12
SCNN1A-220ENST00000543585 ZNF608Q9ULD9 1512 aaPredicted RBP28.26■■■□□ 2.11
SCNN1A-220ENST00000543585 CUX1P39880 1505 aa28.25■■■□□ 2.11
SCNN1A-220ENST00000543585 TARBP1Q13395 1621 aaKnown RBP28.25■■■□□ 2.11
SCNN1A-220ENST00000543585 POLA1P09884 1462 aaPredicted RBP28.23■■■□□ 2.11
SCNN1A-220ENST00000543585 EIF4G3O43432 1585 aaKnown RBP28.16■■■□□ 2.1
SCNN1A-220ENST00000543585 FGD5Q6ZNL6 1462 aa28.13■■■□□ 2.09
SCNN1A-220ENST00000543585 RAD54L2Q9Y4B4 1467 aa28.12■■■□□ 2.09
SCNN1A-220ENST00000543585 SOGA1O94964 1423 aa28.04■■■□□ 2.08
SCNN1A-220ENST00000543585 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
SCNN1A-220ENST00000543585 AQRO60306 1485 aaKnown RBP eCLIP28.03■■■□□ 2.084e-8■■■■■ 31.9
SCNN1A-220ENST00000543585 BIVM-ERCC5R4GMW8 1640 aa27.99■■■□□ 2.07
SCNN1A-220ENST00000543585 SYNJ1O43426 1573 aa27.97■■■□□ 2.07
SCNN1A-220ENST00000543585 TOP2BQ02880 1626 aa27.94■■■□□ 2.06
SCNN1A-220ENST00000543585 TDRD9Q8NDG6 1382 aaKnown RBP27.93■■■□□ 2.06
SCNN1A-220ENST00000543585 CHD1O14646 1710 aa27.92■■■□□ 2.06
SCNN1A-220ENST00000543585 WRNQ14191 1432 aaPredicted RBP eCLIP27.9■■■□□ 2.06
SCNN1A-220ENST00000543585 PBRM1Q86U86 1689 aa27.84■■■□□ 2.05
SCNN1A-220ENST00000543585 OSCARQ8IYS5 282 aa27.84■■■□□ 2.05
SCNN1A-220ENST00000543585 ABCA10Q8WWZ4 1543 aa27.83■■■□□ 2.05
SCNN1A-220ENST00000543585 ABCA5Q8WWZ7 1642 aa27.82■■■□□ 2.04
SCNN1A-220ENST00000543585 SNAPC4Q5SXM2 1469 aa27.78■■■□□ 2.04
SCNN1A-220ENST00000543585 GRIN2BQ13224 1484 aa27.75■■■□□ 2.03
SCNN1A-220ENST00000543585 GAPVD1Q14C86 1478 aa27.74■■■□□ 2.03
SCNN1A-220ENST00000543585 MAGI1Q96QZ7 1491 aaPredicted RBP27.7■■■□□ 2.02
SCNN1A-220ENST00000543585 FBLN2P98095 1184 aa27.63■■■□□ 2.01
SCNN1A-220ENST00000543585 RIMBP3CA6NJZ7 1639 aa27.61■■■□□ 2.01
SCNN1A-220ENST00000543585 RIMBP3BA6NNM3 1639 aa27.61■■■□□ 2.01
SCNN1A-220ENST00000543585 RIMBP3Q9UFD9 1639 aa27.61■■■□□ 2.01
SCNN1A-220ENST00000543585 SYNJ2O15056 1496 aa27.59■■■□□ 2.01
SCNN1A-220ENST00000543585 ADAMTS12P58397 1594 aa27.55■■■□□ 2
SCNN1A-220ENST00000543585 ARHGEF11O15085 1522 aa27.52■■■□□ 2
SCNN1A-220ENST00000543585 CLASP1Q7Z460 1538 aa27.52■■■□□ 2
SCNN1A-220ENST00000543585 CHMP7Q8WUX9 453 aaPredicted RBP27.51■■□□□ 1.99
SCNN1A-220ENST00000543585 ERICH3Q5RHP9 1530 aa27.49■■□□□ 1.99
SCNN1A-220ENST00000543585 TRIM41Q8WV44 630 aa27.42■■□□□ 1.98
SCNN1A-220ENST00000543585 GRIN2AQ12879 1464 aa27.42■■□□□ 1.98
SCNN1A-220ENST00000543585 FHAD1B1AJZ9 1412 aa27.39■■□□□ 1.97
SCNN1A-220ENST00000543585 CEP170Q5SW79 1584 aa27.36■■□□□ 1.97
SCNN1A-220ENST00000543585 NUP160Q12769 1436 aa27.32■■□□□ 1.96
SCNN1A-220ENST00000543585 ARAP1Q96P48 1450 aa27.31■■□□□ 1.96
SCNN1A-220ENST00000543585 KIF27Q86VH2 1401 aa27.3■■□□□ 1.96
SCNN1A-220ENST00000543585 IGF1RP08069 1367 aa27.25■■□□□ 1.95
SCNN1A-220ENST00000543585 CUL7Q14999 1698 aa27.25■■□□□ 1.95
SCNN1A-220ENST00000543585 SHROOM2Q13796 1616 aa27.2■■□□□ 1.95
SCNN1A-220ENST00000543585 ERCC6L2Q5T890 1561 aa27.19■■□□□ 1.94
SCNN1A-220ENST00000543585 CYB5RLQ6IPT4 315 aa27.18■■□□□ 1.94
SCNN1A-220ENST00000543585 RUSC2Q8N2Y8 1516 aa27.16■■□□□ 1.94
SCNN1A-220ENST00000543585 CARMIL1Q5VZK9 1371 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms