RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 NISCHQ9Y2I1 1504 aa21.22■□□□□ 0.99
GNE-206ENST00000543356 CCDC180Q9P1Z9 1646 aa18.59■□□□□ 0.57
GNE-206ENST00000543356 ZCCHC6Q5VYS8 1495 aaKnown RBP17.86■□□□□ 0.45
GNE-206ENST00000543356 DCAF1Q9Y4B6 1507 aa17.61■□□□□ 0.41
GNE-206ENST00000543356 ABCC9O60706 1549 aa17.42■□□□□ 0.38
GNE-206ENST00000543356 MYO15BQ96JP2 1530 aa17.4■□□□□ 0.38
GNE-206ENST00000543356 DCAF8L2P0C7V8 631 aa17.34■□□□□ 0.37
GNE-206ENST00000543356 NACADO15069 1562 aa17.26■□□□□ 0.35
GNE-206ENST00000543356 SHROOM4Q9ULL8 1493 aa17.2■□□□□ 0.34
GNE-206ENST00000543356 RB1CC1Q8TDY2 1594 aa17.1■□□□□ 0.33
GNE-206ENST00000543356 SCRIBQ14160 1630 aa17■□□□□ 0.31
GNE-206ENST00000543356 UNC13AQ9UPW8 1703 aa16.78■□□□□ 0.28
GNE-206ENST00000543356 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.24
GNE-206ENST00000543356 SUPT5HO00267 1087 aaKnown RBP16.53■□□□□ 0.24
GNE-206ENST00000543356 CECR2Q9BXF3 1484 aa16.44■□□□□ 0.22
GNE-206ENST00000543356 RSF1Q96T23 1441 aaPredicted RBP16.44■□□□□ 0.22
GNE-206ENST00000543356 BAZ1AQ9NRL2 1556 aaPredicted RBP16.41■□□□□ 0.22
GNE-206ENST00000543356 MROH2BQ7Z745 1585 aa16.38■□□□□ 0.21
GNE-206ENST00000543356 PABPN1Q86U42 306 aaKnown RBP eCLIP16.37■□□□□ 0.21
GNE-206ENST00000543356 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
GNE-206ENST00000543356 WIZO95785 1651 aa16.26■□□□□ 0.19
GNE-206ENST00000543356 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
GNE-206ENST00000543356 TOP2AP11388 1531 aaKnown RBP16.12■□□□□ 0.17
GNE-206ENST00000543356 EIF4G1Q04637 1599 aaKnown RBP16.07■□□□□ 0.16
GNE-206ENST00000543356 SMARCA2P51531 1590 aa16.05■□□□□ 0.16
GNE-206ENST00000543356 ATAD2BQ9ULI0 1458 aa16.02■□□□□ 0.16
GNE-206ENST00000543356 BAZ1BQ9UIG0 1483 aaKnown RBP15.94■□□□□ 0.14
GNE-206ENST00000543356 HMGXB3Q12766 1538 aa15.92■□□□□ 0.14
GNE-206ENST00000543356 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
GNE-206ENST00000543356 NCAPD3P42695 1498 aa15.9■□□□□ 0.14
GNE-206ENST00000543356 CHIC1Q5VXU3 224 aa15.88■□□□□ 0.13
GNE-206ENST00000543356 CC2D2AQ9P2K1 1620 aa15.82■□□□□ 0.12
GNE-206ENST00000543356 TRIM41Q8WV44 630 aa15.58■□□□□ 0.08
GNE-206ENST00000543356 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
GNE-206ENST00000543356 PRDM2Q13029 1718 aa15.56■□□□□ 0.08
GNE-206ENST00000543356 CFTRP13569 1480 aa15.55■□□□□ 0.08
GNE-206ENST00000543356 WRNQ14191 1432 aaPredicted RBP eCLIP15.47■□□□□ 0.07
GNE-206ENST00000543356 CADPSQ9ULU8 1353 aa15.46■□□□□ 0.07
GNE-206ENST00000543356 SYNJ1O43426 1573 aa15.44■□□□□ 0.06
GNE-206ENST00000543356 BIVM-ERCC5R4GMW8 1640 aa15.41■□□□□ 0.06
GNE-206ENST00000543356 TOP2BQ02880 1626 aa15.4■□□□□ 0.06
GNE-206ENST00000543356 LAMC3Q9Y6N6 1575 aa15.39■□□□□ 0.05
GNE-206ENST00000543356 CUX1P39880 1505 aa15.33■□□□□ 0.04
GNE-206ENST00000543356 NESP48681 1621 aa15.3■□□□□ 0.04
GNE-206ENST00000543356 EEA1Q15075 1411 aa15.3■□□□□ 0.04
GNE-206ENST00000543356 FANCD2Q9BXW9 1451 aa15.3■□□□□ 0.04
GNE-206ENST00000543356 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
GNE-206ENST00000543356 SOGA1O94964 1423 aa15.26■□□□□ 0.03
GNE-206ENST00000543356 FAM9AQ8IZU1 332 aaPredicted RBP15.24■□□□□ 0.03
GNE-206ENST00000543356 LOC105371045A0A1W2PR82 267 aa15.22■□□□□ 0.03
GNE-206ENST00000543356 CEP164Q9UPV0 1460 aa15.22■□□□□ 0.03
GNE-206ENST00000543356 PDS5BQ9NTI5 1447 aa15.22■□□□□ 0.03
GNE-206ENST00000543356 DNMBPQ6XZF7 1577 aa15.21■□□□□ 0.03
GNE-206ENST00000543356 RUSC2Q8N2Y8 1516 aa15.2■□□□□ 0.02
GNE-206ENST00000543356 KIF21AQ7Z4S6 1674 aa15.19■□□□□ 0.02
GNE-206ENST00000543356 TOPBP1Q92547 1522 aa15.15■□□□□ 0.02
GNE-206ENST00000543356 FGD5Q6ZNL6 1462 aa15.15■□□□□ 0.02
GNE-206ENST00000543356 KIF21BO75037 1637 aa15.13■□□□□ 0.01
GNE-206ENST00000543356 CSRNP3Q8WYN3 585 aa15.13■□□□□ 0.01
GNE-206ENST00000543356 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
GNE-206ENST00000543356 KIF27Q86VH2 1401 aa15.09■□□□□ 0.01
GNE-206ENST00000543356 POLA1P09884 1462 aaPredicted RBP15.07■□□□□ 0
GNE-206ENST00000543356 GOLGA3Q08378 1498 aa15.07■□□□□ 0
GNE-206ENST00000543356 MRC2Q9UBG0 1479 aa15.04■□□□□ -0
GNE-206ENST00000543356 WDR97A6NE52 1622 aa15.04■□□□□ -0
GNE-206ENST00000543356 ABCA10Q8WWZ4 1543 aa15.04■□□□□ -0
GNE-206ENST00000543356 CUX2O14529 1486 aa15.03■□□□□ -0
GNE-206ENST00000543356 ERICH3Q5RHP9 1530 aa15.02□□□□□ -0.01
GNE-206ENST00000543356 TNIKQ9UKE5 1360 aa15.01□□□□□ -0.01
GNE-206ENST00000543356 PRXQ9BXM0 1461 aa15.01□□□□□ -0.01
GNE-206ENST00000543356 WDR62O43379 1518 aa14.99□□□□□ -0.01
GNE-206ENST00000543356 RAD54L2Q9Y4B4 1467 aa14.99□□□□□ -0.01
GNE-206ENST00000543356 EHMT2Q96KQ7 1210 aa14.98□□□□□ -0.01
GNE-206ENST00000543356 RAPGEF2Q9Y4G8 1499 aa14.97□□□□□ -0.01
GNE-206ENST00000543356 TARBP1Q13395 1621 aaKnown RBP14.95□□□□□ -0.02
GNE-206ENST00000543356 THOC2Q8NI27 1593 aaKnown RBP14.95□□□□□ -0.02
GNE-206ENST00000543356 ERCC6Q03468 1493 aa14.95□□□□□ -0.02
GNE-206ENST00000543356 ABCA5Q8WWZ7 1642 aa14.95□□□□□ -0.02
GNE-206ENST00000543356 IGF1RP08069 1367 aa14.92□□□□□ -0.02
GNE-206ENST00000543356 CEP162Q5TB80 1403 aa14.92□□□□□ -0.02
GNE-206ENST00000543356 CUL7Q14999 1698 aa14.9□□□□□ -0.02
GNE-206ENST00000543356 UBTFP17480 764 aaKnown RBP14.9□□□□□ -0.02
GNE-206ENST00000543356 IFT140Q96RY7 1462 aa14.86□□□□□ -0.03
GNE-206ENST00000543356 CARMIL1Q5VZK9 1371 aa14.85□□□□□ -0.03
GNE-206ENST00000543356 GAPVD1Q14C86 1478 aa14.85□□□□□ -0.03
GNE-206ENST00000543356 PBRM1Q86U86 1689 aa14.83□□□□□ -0.04
GNE-206ENST00000543356 TDRD9Q8NDG6 1382 aaKnown RBP14.81□□□□□ -0.04
GNE-206ENST00000543356 CLIP1P30622 1438 aa14.8□□□□□ -0.04
GNE-206ENST00000543356 EIF4G3O43432 1585 aaKnown RBP14.75□□□□□ -0.05
GNE-206ENST00000543356 GRIN2BQ13224 1484 aa14.75□□□□□ -0.05
GNE-206ENST00000543356 CTTNBP2Q8WZ74 1663 aa14.74□□□□□ -0.05
GNE-206ENST00000543356 ADAMTS12P58397 1594 aa14.74□□□□□ -0.05
GNE-206ENST00000543356 ZNF608Q9ULD9 1512 aaPredicted RBP14.74□□□□□ -0.05
GNE-206ENST00000543356 AQRO60306 1485 aaKnown RBP eCLIP14.73□□□□□ -0.058e-8■■■■■ 39.5
GNE-206ENST00000543356 FHAD1B1AJZ9 1412 aa14.7□□□□□ -0.06
GNE-206ENST00000543356 VPS8Q8N3P4 1428 aa14.7□□□□□ -0.06
GNE-206ENST00000543356 ARAP1Q96P48 1450 aa14.68□□□□□ -0.06
GNE-206ENST00000543356 ARHGAP35Q9NRY4 1499 aa14.67□□□□□ -0.06
GNE-206ENST00000543356 EFCAB5A4FU69 1503 aa14.64□□□□□ -0.07
GNE-206ENST00000543356 MAGI1Q96QZ7 1491 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms