RNA–Protein interactions for RNA: ENST00000543239.1

CIT-212, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-212ENST00000543239 NISCHQ9Y2I1 1504 aa39.71■■■■□ 3.95
CIT-212ENST00000543239 CCDC180Q9P1Z9 1646 aa35.39■■■■□ 3.26
CIT-212ENST00000543239 ABCC9O60706 1549 aa34.63■■■■□ 3.13
CIT-212ENST00000543239 RB1CC1Q8TDY2 1594 aa33.34■■■□□ 2.93
CIT-212ENST00000543239 NACADO15069 1562 aa33.28■■■□□ 2.92
CIT-212ENST00000543239 DCAF8L2P0C7V8 631 aa33.11■■■□□ 2.89
CIT-212ENST00000543239 MYO15BQ96JP2 1530 aa33.1■■■□□ 2.89
CIT-212ENST00000543239 ZCCHC6Q5VYS8 1495 aaKnown RBP33.08■■■□□ 2.89
CIT-212ENST00000543239 DCAF1Q9Y4B6 1507 aa32.91■■■□□ 2.86
CIT-212ENST00000543239 UNC13AQ9UPW8 1703 aa32.53■■■□□ 2.8
CIT-212ENST00000543239 PABPN1Q86U42 306 aaKnown RBP eCLIP32.3■■■□□ 2.76
CIT-212ENST00000543239 BICRAQ9NZM4 1560 aa32.3■■■□□ 2.76
CIT-212ENST00000543239 SCRIBQ14160 1630 aa32.21■■■□□ 2.75
CIT-212ENST00000543239 SHROOM4Q9ULL8 1493 aa32.05■■■□□ 2.72
CIT-212ENST00000543239 DNAJC5BQ9UF47 199 aa31.83■■■□□ 2.69
CIT-212ENST00000543239 EIF4G1Q04637 1599 aaKnown RBP31.47■■■□□ 2.63
CIT-212ENST00000543239 CC2D2AQ9P2K1 1620 aa31.35■■■□□ 2.61
CIT-212ENST00000543239 CECR2Q9BXF3 1484 aa31.15■■■□□ 2.58
CIT-212ENST00000543239 SMARCA4P51532 1647 aa30.84■■■□□ 2.53
CIT-212ENST00000543239 BAZ1AQ9NRL2 1556 aaPredicted RBP30.81■■■□□ 2.52
CIT-212ENST00000543239 NCAPD3P42695 1498 aa30.7■■■□□ 2.51
CIT-212ENST00000543239 ATAD2BQ9ULI0 1458 aa30.69■■■□□ 2.5
CIT-212ENST00000543239 SMARCA2P51531 1590 aa30.67■■■□□ 2.5
CIT-212ENST00000543239 MROH2BQ7Z745 1585 aa30.58■■■□□ 2.49
CIT-212ENST00000543239 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
CIT-212ENST00000543239 HMGXB3Q12766 1538 aa30.57■■■□□ 2.48
CIT-212ENST00000543239 BAZ1BQ9UIG0 1483 aaKnown RBP30.44■■■□□ 2.46
CIT-212ENST00000543239 WIZO95785 1651 aa30.23■■■□□ 2.43
CIT-212ENST00000543239 RSF1Q96T23 1441 aaPredicted RBP30.21■■■□□ 2.43
CIT-212ENST00000543239 TOP2AP11388 1531 aaKnown RBP29.96■■■□□ 2.39
CIT-212ENST00000543239 NESP48681 1621 aa29.93■■■□□ 2.38
CIT-212ENST00000543239 LAMC3Q9Y6N6 1575 aa29.92■■■□□ 2.38
CIT-212ENST00000543239 ERCC6Q03468 1493 aa29.87■■■□□ 2.37
CIT-212ENST00000543239 CADPSQ9ULU8 1353 aa29.78■■■□□ 2.36
CIT-212ENST00000543239 PDS5BQ9NTI5 1447 aa29.71■■■□□ 2.35
CIT-212ENST00000543239 CUX2O14529 1486 aa29.64■■■□□ 2.34
CIT-212ENST00000543239 CFTRP13569 1480 aa29.6■■■□□ 2.33
CIT-212ENST00000543239 KIF21AQ7Z4S6 1674 aa29.6■■■□□ 2.33
CIT-212ENST00000543239 CCDC88BA6NC98 1476 aa29.57■■■□□ 2.32
CIT-212ENST00000543239 THOC2Q8NI27 1593 aaKnown RBP29.56■■■□□ 2.32
CIT-212ENST00000543239 FANCD2Q9BXW9 1451 aa29.44■■■□□ 2.3
CIT-212ENST00000543239 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
CIT-212ENST00000543239 MRC2Q9UBG0 1479 aa29.4■■■□□ 2.3
CIT-212ENST00000543239 PRDM2Q13029 1718 aa29.37■■■□□ 2.29
CIT-212ENST00000543239 WDR62O43379 1518 aa29.32■■■□□ 2.28
CIT-212ENST00000543239 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
CIT-212ENST00000543239 URB2Q14146 1524 aaKnown RBP29.15■■■□□ 2.26
CIT-212ENST00000543239 ABCC8Q09428 1581 aa29■■■□□ 2.23
CIT-212ENST00000543239 TOPBP1Q92547 1522 aa28.96■■■□□ 2.23
CIT-212ENST00000543239 DNMBPQ6XZF7 1577 aa28.93■■■□□ 2.22
CIT-212ENST00000543239 IFT140Q96RY7 1462 aa28.82■■■□□ 2.2
CIT-212ENST00000543239 DNAJC5Q9H3Z4 198 aa28.78■■■□□ 2.2
CIT-212ENST00000543239 POLA1P09884 1462 aaPredicted RBP28.71■■■□□ 2.19
CIT-212ENST00000543239 CUX1P39880 1505 aa28.69■■■□□ 2.18
CIT-212ENST00000543239 TARBP1Q13395 1621 aaKnown RBP28.65■■■□□ 2.18
CIT-212ENST00000543239 ZNF608Q9ULD9 1512 aaPredicted RBP28.65■■■□□ 2.18
CIT-212ENST00000543239 FGD5Q6ZNL6 1462 aa28.62■■■□□ 2.17
CIT-212ENST00000543239 SOGA1O94964 1423 aa28.58■■■□□ 2.17
CIT-212ENST00000543239 EIF4G3O43432 1585 aaKnown RBP28.57■■■□□ 2.16
CIT-212ENST00000543239 RAD54L2Q9Y4B4 1467 aa28.55■■■□□ 2.16
CIT-212ENST00000543239 WRNQ14191 1432 aaPredicted RBP eCLIP28.5■■■□□ 2.15
CIT-212ENST00000543239 WDR97A6NE52 1622 aa28.49■■■□□ 2.15
CIT-212ENST00000543239 AQRO60306 1485 aaKnown RBP eCLIP28.47■■■□□ 2.156e-10■■■■■ 73.7
CIT-212ENST00000543239 TOP2BQ02880 1626 aa28.46■■■□□ 2.15
CIT-212ENST00000543239 BIVM-ERCC5R4GMW8 1640 aa28.46■■■□□ 2.15
CIT-212ENST00000543239 SYNJ1O43426 1573 aa28.41■■■□□ 2.14
CIT-212ENST00000543239 TDRD9Q8NDG6 1382 aaKnown RBP28.4■■■□□ 2.14
CIT-212ENST00000543239 ABCA10Q8WWZ4 1543 aa28.37■■■□□ 2.13
CIT-212ENST00000543239 OSCARQ8IYS5 282 aa28.34■■■□□ 2.13
CIT-212ENST00000543239 GRIN2BQ13224 1484 aa28.27■■■□□ 2.12
CIT-212ENST00000543239 ABCA5Q8WWZ7 1642 aa28.26■■■□□ 2.11
CIT-212ENST00000543239 GAPVD1Q14C86 1478 aa28.26■■■□□ 2.11
CIT-212ENST00000543239 SNAPC4Q5SXM2 1469 aa28.23■■■□□ 2.11
CIT-212ENST00000543239 MAGI1Q96QZ7 1491 aaPredicted RBP28.23■■■□□ 2.11
CIT-212ENST00000543239 CHD1O14646 1710 aa28.21■■■□□ 2.11
CIT-212ENST00000543239 PBRM1Q86U86 1689 aa28.2■■■□□ 2.11
CIT-212ENST00000543239 FBLN2P98095 1184 aa28.12■■■□□ 2.09
CIT-212ENST00000543239 SYNJ2O15056 1496 aa28.11■■■□□ 2.09
CIT-212ENST00000543239 CHMP7Q8WUX9 453 aaPredicted RBP28.06■■■□□ 2.08
CIT-212ENST00000543239 ERICH3Q5RHP9 1530 aa28.03■■■□□ 2.08
CIT-212ENST00000543239 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
CIT-212ENST00000543239 FHAD1B1AJZ9 1412 aa27.94■■■□□ 2.06
CIT-212ENST00000543239 CLASP1Q7Z460 1538 aa27.93■■■□□ 2.06
CIT-212ENST00000543239 GRIN2AQ12879 1464 aa27.92■■■□□ 2.06
CIT-212ENST00000543239 RIMBP3CA6NJZ7 1639 aa27.91■■■□□ 2.06
CIT-212ENST00000543239 RIMBP3BA6NNM3 1639 aa27.91■■■□□ 2.06
CIT-212ENST00000543239 RIMBP3Q9UFD9 1639 aa27.91■■■□□ 2.06
CIT-212ENST00000543239 ARHGEF11O15085 1522 aa27.91■■■□□ 2.06
CIT-212ENST00000543239 KIF27Q86VH2 1401 aa27.91■■■□□ 2.06
CIT-212ENST00000543239 NUP160Q12769 1436 aa27.8■■■□□ 2.04
CIT-212ENST00000543239 IGF1RP08069 1367 aa27.78■■■□□ 2.04
CIT-212ENST00000543239 CEP170Q5SW79 1584 aa27.77■■■□□ 2.04
CIT-212ENST00000543239 CUL7Q14999 1698 aa27.76■■■□□ 2.03
CIT-212ENST00000543239 TRIM41Q8WV44 630 aa27.74■■■□□ 2.03
CIT-212ENST00000543239 ARAP1Q96P48 1450 aa27.67■■■□□ 2.02
CIT-212ENST00000543239 CARMIL1Q5VZK9 1371 aa27.62■■■□□ 2.01
CIT-212ENST00000543239 SHROOM2Q13796 1616 aa27.61■■■□□ 2.01
CIT-212ENST00000543239 CYB5RLQ6IPT4 315 aa27.59■■■□□ 2.01
CIT-212ENST00000543239 RUSC2Q8N2Y8 1516 aa27.58■■■□□ 2.01
CIT-212ENST00000543239 KIAA0586Q9BVV6 1533 aa27.51■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms