RNA–Protein interactions for RNA: ENST00000543115.5

PTPN6-220, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 4

Gene PTPN6, Length 650 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-220ENST00000543115 NISCHQ9Y2I1 1504 aa30.15■■■□□ 2.42
PTPN6-220ENST00000543115 CCDC180Q9P1Z9 1646 aa26.95■■□□□ 1.91
PTPN6-220ENST00000543115 ABCC9O60706 1549 aa26.9■■□□□ 1.9
PTPN6-220ENST00000543115 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
PTPN6-220ENST00000543115 NACADO15069 1562 aa25.46■■□□□ 1.67
PTPN6-220ENST00000543115 DCAF8L2P0C7V8 631 aa25.39■■□□□ 1.66
PTPN6-220ENST00000543115 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
PTPN6-220ENST00000543115 MYO15BQ96JP2 1530 aa25.16■■□□□ 1.62
PTPN6-220ENST00000543115 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
PTPN6-220ENST00000543115 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
PTPN6-220ENST00000543115 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
PTPN6-220ENST00000543115 BICRAQ9NZM4 1560 aa24.91■■□□□ 1.58
PTPN6-220ENST00000543115 DCAF1Q9Y4B6 1507 aa24.88■■□□□ 1.57
PTPN6-220ENST00000543115 SCRIBQ14160 1630 aa24.61■■□□□ 1.53
PTPN6-220ENST00000543115 SHROOM4Q9ULL8 1493 aa24.52■■□□□ 1.52
PTPN6-220ENST00000543115 CC2D2AQ9P2K1 1620 aa24.28■■□□□ 1.48
PTPN6-220ENST00000543115 EIF4G1Q04637 1599 aaKnown RBP24.27■■□□□ 1.48
PTPN6-220ENST00000543115 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
PTPN6-220ENST00000543115 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
PTPN6-220ENST00000543115 ATAD2BQ9ULI0 1458 aa23.49■■□□□ 1.35
PTPN6-220ENST00000543115 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
PTPN6-220ENST00000543115 SMARCA2P51531 1590 aa23.4■■□□□ 1.34
PTPN6-220ENST00000543115 BAZ1AQ9NRL2 1556 aaPredicted RBP23.37■■□□□ 1.33
PTPN6-220ENST00000543115 HMGXB3Q12766 1538 aa23.36■■□□□ 1.33
PTPN6-220ENST00000543115 MROH2BQ7Z745 1585 aa23.26■■□□□ 1.31
PTPN6-220ENST00000543115 BAZ1BQ9UIG0 1483 aaKnown RBP23.25■■□□□ 1.31
PTPN6-220ENST00000543115 PEG3Q9GZU2 1588 aa23.25■■□□□ 1.31
PTPN6-220ENST00000543115 ERCC6Q03468 1493 aa23.17■■□□□ 1.3
PTPN6-220ENST00000543115 NESP48681 1621 aa23.16■■□□□ 1.3
PTPN6-220ENST00000543115 CUX2O14529 1486 aa23.09■■□□□ 1.29
PTPN6-220ENST00000543115 WIZO95785 1651 aa22.97■■□□□ 1.27
PTPN6-220ENST00000543115 DNAJC5Q9H3Z4 198 aa22.96■■□□□ 1.27
PTPN6-220ENST00000543115 LAMC3Q9Y6N6 1575 aa22.96■■□□□ 1.27
PTPN6-220ENST00000543115 THOC2Q8NI27 1593 aaKnown RBP22.88■■□□□ 1.25
PTPN6-220ENST00000543115 CADPSQ9ULU8 1353 aa22.82■■□□□ 1.24
PTPN6-220ENST00000543115 RSF1Q96T23 1441 aaPredicted RBP22.82■■□□□ 1.24
PTPN6-220ENST00000543115 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
PTPN6-220ENST00000543115 KIF21AQ7Z4S6 1674 aa22.81■■□□□ 1.24
PTPN6-220ENST00000543115 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
PTPN6-220ENST00000543115 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.21
PTPN6-220ENST00000543115 CFTRP13569 1480 aa22.6■■□□□ 1.21
PTPN6-220ENST00000543115 WDR62O43379 1518 aa22.58■■□□□ 1.21
PTPN6-220ENST00000543115 FANCD2Q9BXW9 1451 aa22.57■■□□□ 1.2
PTPN6-220ENST00000543115 CEP164Q9UPV0 1460 aa22.57■■□□□ 1.2
PTPN6-220ENST00000543115 CCDC88BA6NC98 1476 aa22.43■■□□□ 1.18
PTPN6-220ENST00000543115 URB2Q14146 1524 aaKnown RBP22.4■■□□□ 1.18
PTPN6-220ENST00000543115 PRDM2Q13029 1718 aa22.31■■□□□ 1.16
PTPN6-220ENST00000543115 TOPBP1Q92547 1522 aa22.16■■□□□ 1.14
PTPN6-220ENST00000543115 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
PTPN6-220ENST00000543115 ZNF608Q9ULD9 1512 aaPredicted RBP22.11■■□□□ 1.13
PTPN6-220ENST00000543115 ABCC8Q09428 1581 aa22.07■■□□□ 1.12
PTPN6-220ENST00000543115 DNMBPQ6XZF7 1577 aa22.07■■□□□ 1.12
PTPN6-220ENST00000543115 OSCARQ8IYS5 282 aa22.06■■□□□ 1.12
PTPN6-220ENST00000543115 TRIM41Q8WV44 630 aa22.01■■□□□ 1.11
PTPN6-220ENST00000543115 EIF4G3O43432 1585 aaKnown RBP21.96■■□□□ 1.11
PTPN6-220ENST00000543115 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
PTPN6-220ENST00000543115 POLA1P09884 1462 aaPredicted RBP21.95■■□□□ 1.1
PTPN6-220ENST00000543115 AQRO60306 1485 aaKnown RBP eCLIP21.91■■□□□ 1.1
PTPN6-220ENST00000543115 SUPT5HO00267 1087 aaKnown RBP21.89■■□□□ 1.09
PTPN6-220ENST00000543115 RAD54L2Q9Y4B4 1467 aa21.88■■□□□ 1.09
PTPN6-220ENST00000543115 SOGA1O94964 1423 aa21.84■■□□□ 1.09
PTPN6-220ENST00000543115 CUX1P39880 1505 aa21.84■■□□□ 1.09
PTPN6-220ENST00000543115 FGD5Q6ZNL6 1462 aa21.83■■□□□ 1.08
PTPN6-220ENST00000543115 TDRD9Q8NDG6 1382 aaKnown RBP21.8■■□□□ 1.08
PTPN6-220ENST00000543115 RIMBP3CA6NJZ7 1639 aa21.77■■□□□ 1.08
PTPN6-220ENST00000543115 RIMBP3BA6NNM3 1639 aa21.77■■□□□ 1.08
PTPN6-220ENST00000543115 RIMBP3Q9UFD9 1639 aa21.77■■□□□ 1.08
PTPN6-220ENST00000543115 CHD1O14646 1710 aa21.75■■□□□ 1.07
PTPN6-220ENST00000543115 ARHGEF11O15085 1522 aa21.73■■□□□ 1.07
PTPN6-220ENST00000543115 FBLN2P98095 1184 aa21.72■■□□□ 1.07
PTPN6-220ENST00000543115 SNAPC4Q5SXM2 1469 aa21.69■■□□□ 1.06
PTPN6-220ENST00000543115 WDR97A6NE52 1622 aa21.69■■□□□ 1.06
PTPN6-220ENST00000543115 GRIN2BQ13224 1484 aa21.63■■□□□ 1.05
PTPN6-220ENST00000543115 MAGI1Q96QZ7 1491 aaPredicted RBP21.6■■□□□ 1.05
PTPN6-220ENST00000543115 ABCA10Q8WWZ4 1543 aa21.57■■□□□ 1.04
PTPN6-220ENST00000543115 GAPVD1Q14C86 1478 aa21.57■■□□□ 1.04
PTPN6-220ENST00000543115 CYB5RLQ6IPT4 315 aa21.56■■□□□ 1.04
PTPN6-220ENST00000543115 CHMP7Q8WUX9 453 aaPredicted RBP21.56■■□□□ 1.04
PTPN6-220ENST00000543115 SYNJ2O15056 1496 aa21.54■■□□□ 1.04
PTPN6-220ENST00000543115 ARAP1Q96P48 1450 aa21.54■■□□□ 1.04
PTPN6-220ENST00000543115 ABCA5Q8WWZ7 1642 aa21.54■■□□□ 1.04
PTPN6-220ENST00000543115 CLASP1Q7Z460 1538 aa21.54■■□□□ 1.04
PTPN6-220ENST00000543115 PBRM1Q86U86 1689 aa21.53■■□□□ 1.04
PTPN6-220ENST00000543115 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
PTPN6-220ENST00000543115 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
PTPN6-220ENST00000543115 TOP2BQ02880 1626 aa21.49■■□□□ 1.03
PTPN6-220ENST00000543115 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
PTPN6-220ENST00000543115 ADAMTS12P58397 1594 aa21.36■■□□□ 1.01
PTPN6-220ENST00000543115 GRIN2AQ12879 1464 aa21.36■■□□□ 1.01
PTPN6-220ENST00000543115 FHAD1B1AJZ9 1412 aa21.29■■□□□ 1
PTPN6-220ENST00000543115 CEP170Q5SW79 1584 aa21.29■■□□□ 1
PTPN6-220ENST00000543115 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
PTPN6-220ENST00000543115 NUP160Q12769 1436 aa21.29■■□□□ 1
PTPN6-220ENST00000543115 TRHP20396 242 aaPredicted RBP21.26■□□□□ 0.99
PTPN6-220ENST00000543115 ERCC6L2Q5T890 1561 aa21.25■□□□□ 0.99
PTPN6-220ENST00000543115 SHROOM2Q13796 1616 aa21.16■□□□□ 0.98
PTPN6-220ENST00000543115 IGF1RP08069 1367 aa21.08■□□□□ 0.96
PTPN6-220ENST00000543115 KIF27Q86VH2 1401 aa21.07■□□□□ 0.96
PTPN6-220ENST00000543115 PRG4Q92954 1404 aaPredicted RBP21.06■□□□□ 0.96
PTPN6-220ENST00000543115 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms