RNA–Protein interactions for RNA: ENST00000543114.1

CACNA1C-230, Transcript of calcium voltage-gated channel subunit alpha1 C, humanhuman

TSL 4

Gene CACNA1C, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1C-230ENST00000543114 NISCHQ9Y2I1 1504 aa49.33■■■■■ 5.49
CACNA1C-230ENST00000543114 CCDC180Q9P1Z9 1646 aa44.29■■■■■ 4.68
CACNA1C-230ENST00000543114 ABCC9O60706 1549 aa44.12■■■■■ 4.65
CACNA1C-230ENST00000543114 RB1CC1Q8TDY2 1594 aa42.05■■■■■ 4.32
CACNA1C-230ENST00000543114 NACADO15069 1562 aa41.78■■■■■ 4.28
CACNA1C-230ENST00000543114 DCAF8L2P0C7V8 631 aa41.44■■■■■ 4.22
CACNA1C-230ENST00000543114 MYO15BQ96JP2 1530 aa41.24■■■■■ 4.19
CACNA1C-230ENST00000543114 DNAJC5BQ9UF47 199 aa41.23■■■■■ 4.19
CACNA1C-230ENST00000543114 UNC13AQ9UPW8 1703 aa41.22■■■■■ 4.19
CACNA1C-230ENST00000543114 PABPN1Q86U42 306 aaKnown RBP eCLIP41.03■■■■■ 4.16
CACNA1C-230ENST00000543114 ZCCHC6Q5VYS8 1495 aaKnown RBP40.96■■■■■ 4.15
CACNA1C-230ENST00000543114 BICRAQ9NZM4 1560 aa40.87■■■■■ 4.13
CACNA1C-230ENST00000543114 DCAF1Q9Y4B6 1507 aa40.76■■■■■ 4.12
CACNA1C-230ENST00000543114 SCRIBQ14160 1630 aa40.37■■■■■ 4.05
CACNA1C-230ENST00000543114 SHROOM4Q9ULL8 1493 aa40.29■■■■■ 4.04
CACNA1C-230ENST00000543114 CC2D2AQ9P2K1 1620 aa39.9■■■■□ 3.98
CACNA1C-230ENST00000543114 EIF4G1Q04637 1599 aaKnown RBP39.84■■■■□ 3.97
CACNA1C-230ENST00000543114 CECR2Q9BXF3 1484 aa39.72■■■■□ 3.95
CACNA1C-230ENST00000543114 NCAPD3P42695 1498 aa38.54■■■■□ 3.76
CACNA1C-230ENST00000543114 SMARCA4P51532 1647 aa38.51■■■■□ 3.76
CACNA1C-230ENST00000543114 ATAD2BQ9ULI0 1458 aa38.47■■■■□ 3.75
CACNA1C-230ENST00000543114 SMARCA2P51531 1590 aa38.37■■■■□ 3.73
CACNA1C-230ENST00000543114 HMGXB3Q12766 1538 aa38.33■■■■□ 3.73
CACNA1C-230ENST00000543114 BAZ1AQ9NRL2 1556 aaPredicted RBP38.3■■■■□ 3.72
CACNA1C-230ENST00000543114 PEG3Q9GZU2 1588 aa38.13■■■■□ 3.69
CACNA1C-230ENST00000543114 BAZ1BQ9UIG0 1483 aaKnown RBP38.1■■■■□ 3.69
CACNA1C-230ENST00000543114 ERCC6Q03468 1493 aa38.07■■■■□ 3.68
CACNA1C-230ENST00000543114 MROH2BQ7Z745 1585 aa38.03■■■■□ 3.68
CACNA1C-230ENST00000543114 CUX2O14529 1486 aa37.97■■■■□ 3.67
CACNA1C-230ENST00000543114 NESP48681 1621 aa37.96■■■■□ 3.67
CACNA1C-230ENST00000543114 DNAJC5Q9H3Z4 198 aa37.74■■■■□ 3.63
CACNA1C-230ENST00000543114 LAMC3Q9Y6N6 1575 aa37.7■■■■□ 3.63
CACNA1C-230ENST00000543114 THOC2Q8NI27 1593 aaKnown RBP37.62■■■■□ 3.61
CACNA1C-230ENST00000543114 WIZO95785 1651 aa37.61■■■■□ 3.61
CACNA1C-230ENST00000543114 KIF21AQ7Z4S6 1674 aa37.53■■■■□ 3.6
CACNA1C-230ENST00000543114 PDS5BQ9NTI5 1447 aa37.41■■■■□ 3.58
CACNA1C-230ENST00000543114 CADPSQ9ULU8 1353 aa37.35■■■■□ 3.57
CACNA1C-230ENST00000543114 RSF1Q96T23 1441 aaPredicted RBP37.25■■■■□ 3.55
CACNA1C-230ENST00000543114 MRC2Q9UBG0 1479 aa37.14■■■■□ 3.54
CACNA1C-230ENST00000543114 TOP2AP11388 1531 aaKnown RBP37.13■■■■□ 3.53
CACNA1C-230ENST00000543114 WDR62O43379 1518 aa37.09■■■■□ 3.53
CACNA1C-230ENST00000543114 CEP164Q9UPV0 1460 aa37.01■■■■□ 3.52
CACNA1C-230ENST00000543114 CFTRP13569 1480 aa37■■■■□ 3.51
CACNA1C-230ENST00000543114 FANCD2Q9BXW9 1451 aa36.98■■■■□ 3.51
CACNA1C-230ENST00000543114 PRDM2Q13029 1718 aa36.75■■■■□ 3.47
CACNA1C-230ENST00000543114 URB2Q14146 1524 aaKnown RBP36.69■■■■□ 3.46
CACNA1C-230ENST00000543114 CCDC88BA6NC98 1476 aa36.65■■■■□ 3.46
CACNA1C-230ENST00000543114 TOPBP1Q92547 1522 aa36.3■■■■□ 3.4
CACNA1C-230ENST00000543114 IFT140Q96RY7 1462 aa36.25■■■■□ 3.39
CACNA1C-230ENST00000543114 ZNF608Q9ULD9 1512 aaPredicted RBP36.22■■■■□ 3.39
CACNA1C-230ENST00000543114 DNMBPQ6XZF7 1577 aa36.19■■■■□ 3.38
CACNA1C-230ENST00000543114 ABCC8Q09428 1581 aa36.16■■■■□ 3.38
CACNA1C-230ENST00000543114 OSCARQ8IYS5 282 aa36.15■■■■□ 3.38
CACNA1C-230ENST00000543114 TRIM41Q8WV44 630 aa36.14■■■■□ 3.38
CACNA1C-230ENST00000543114 EIF4G3O43432 1585 aaKnown RBP36.08■■■■□ 3.37
CACNA1C-230ENST00000543114 TARBP1Q13395 1621 aaKnown RBP36.01■■■■□ 3.36
CACNA1C-230ENST00000543114 POLA1P09884 1462 aaPredicted RBP35.95■■■■□ 3.35
CACNA1C-230ENST00000543114 AQRO60306 1485 aaKnown RBP eCLIP35.86■■■■□ 3.33
CACNA1C-230ENST00000543114 RIMBP3CA6NJZ7 1639 aa35.83■■■■□ 3.33
CACNA1C-230ENST00000543114 RIMBP3BA6NNM3 1639 aa35.83■■■■□ 3.33
CACNA1C-230ENST00000543114 RIMBP3Q9UFD9 1639 aa35.83■■■■□ 3.33
CACNA1C-230ENST00000543114 CHD1O14646 1710 aa35.8■■■■□ 3.32
CACNA1C-230ENST00000543114 RAD54L2Q9Y4B4 1467 aa35.8■■■■□ 3.32
CACNA1C-230ENST00000543114 CUX1P39880 1505 aa35.74■■■■□ 3.31
CACNA1C-230ENST00000543114 FGD5Q6ZNL6 1462 aa35.73■■■■□ 3.31
CACNA1C-230ENST00000543114 ARHGEF11O15085 1522 aa35.71■■■■□ 3.31
CACNA1C-230ENST00000543114 SOGA1O94964 1423 aa35.7■■■■□ 3.31
CACNA1C-230ENST00000543114 WDR97A6NE52 1622 aa35.64■■■■□ 3.3
CACNA1C-230ENST00000543114 TDRD9Q8NDG6 1382 aaKnown RBP35.64■■■■□ 3.3
CACNA1C-230ENST00000543114 SUPT5HO00267 1087 aaKnown RBP35.59■■■■□ 3.29
CACNA1C-230ENST00000543114 SNAPC4Q5SXM2 1469 aa35.54■■■■□ 3.28
CACNA1C-230ENST00000543114 FBLN2P98095 1184 aa35.52■■■■□ 3.28
CACNA1C-230ENST00000543114 MAGI1Q96QZ7 1491 aaPredicted RBP35.43■■■■□ 3.26
CACNA1C-230ENST00000543114 GRIN2BQ13224 1484 aa35.42■■■■□ 3.26
CACNA1C-230ENST00000543114 PBRM1Q86U86 1689 aa35.4■■■■□ 3.26
CACNA1C-230ENST00000543114 ARAP1Q96P48 1450 aa35.37■■■■□ 3.25
CACNA1C-230ENST00000543114 CLASP1Q7Z460 1538 aa35.37■■■■□ 3.25
CACNA1C-230ENST00000543114 ABCA10Q8WWZ4 1543 aa35.32■■■■□ 3.25
CACNA1C-230ENST00000543114 ABCA5Q8WWZ7 1642 aa35.32■■■■□ 3.25
CACNA1C-230ENST00000543114 GAPVD1Q14C86 1478 aa35.32■■■■□ 3.24
CACNA1C-230ENST00000543114 SYNJ1O43426 1573 aa35.31■■■■□ 3.24
CACNA1C-230ENST00000543114 SYNJ2O15056 1496 aa35.31■■■■□ 3.24
CACNA1C-230ENST00000543114 CYB5RLQ6IPT4 315 aa35.31■■■■□ 3.24
CACNA1C-230ENST00000543114 CHMP7Q8WUX9 453 aaPredicted RBP35.28■■■■□ 3.24
CACNA1C-230ENST00000543114 BIVM-ERCC5R4GMW8 1640 aa35.23■■■■□ 3.23
CACNA1C-230ENST00000543114 TOP2BQ02880 1626 aa35.2■■■■□ 3.23
CACNA1C-230ENST00000543114 WRNQ14191 1432 aaPredicted RBP eCLIP35.15■■■■□ 3.22
CACNA1C-230ENST00000543114 ADAMTS12P58397 1594 aa35.05■■■■□ 3.2
CACNA1C-230ENST00000543114 GRIN2AQ12879 1464 aa35■■■■□ 3.19
CACNA1C-230ENST00000543114 CEP170Q5SW79 1584 aa34.91■■■■□ 3.18
CACNA1C-230ENST00000543114 ERICH3Q5RHP9 1530 aa34.88■■■■□ 3.17
CACNA1C-230ENST00000543114 NUP160Q12769 1436 aa34.88■■■■□ 3.17
CACNA1C-230ENST00000543114 TRHP20396 242 aaPredicted RBP34.87■■■■□ 3.17
CACNA1C-230ENST00000543114 FHAD1B1AJZ9 1412 aa34.87■■■■□ 3.17
CACNA1C-230ENST00000543114 ERCC6L2Q5T890 1561 aa34.83■■■■□ 3.17
CACNA1C-230ENST00000543114 SHROOM2Q13796 1616 aa34.76■■■■□ 3.15
CACNA1C-230ENST00000543114 RUSC2Q8N2Y8 1516 aa34.57■■■■□ 3.12
CACNA1C-230ENST00000543114 PRG4Q92954 1404 aaPredicted RBP34.49■■■■□ 3.11
CACNA1C-230ENST00000543114 KIF27Q86VH2 1401 aa34.44■■■■□ 3.1
CACNA1C-230ENST00000543114 CUL7Q14999 1698 aa34.44■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms