RNA–Protein interactions for RNA: ENST00000542930.1

C2CD3-219, Transcript of C2 calcium dependent domain containing 3, humanhuman

TSL 3

Gene C2CD3, Length 524 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2CD3-219ENST00000542930 NISCHQ9Y2I1 1504 aa24.28■■□□□ 1.48
C2CD3-219ENST00000542930 ABCC9O60706 1549 aa22.53■■□□□ 1.2
C2CD3-219ENST00000542930 CCDC180Q9P1Z9 1646 aa21.99■■□□□ 1.11
C2CD3-219ENST00000542930 DNAJC5BQ9UF47 199 aa21.65■■□□□ 1.06
C2CD3-219ENST00000542930 RB1CC1Q8TDY2 1594 aa21.22■□□□□ 0.99
C2CD3-219ENST00000542930 NACADO15069 1562 aa20.95■□□□□ 0.94
C2CD3-219ENST00000542930 PABPN1Q86U42 306 aaKnown RBP eCLIP20.91■□□□□ 0.94
C2CD3-219ENST00000542930 DCAF8L2P0C7V8 631 aa20.73■□□□□ 0.91
C2CD3-219ENST00000542930 UNC13AQ9UPW8 1703 aa20.68■□□□□ 0.9
C2CD3-219ENST00000542930 BICRAQ9NZM4 1560 aa20.61■□□□□ 0.89
C2CD3-219ENST00000542930 MYO15BQ96JP2 1530 aa20.52■□□□□ 0.87
C2CD3-219ENST00000542930 CECR2Q9BXF3 1484 aa20.37■□□□□ 0.85
C2CD3-219ENST00000542930 SHROOM4Q9ULL8 1493 aa20.32■□□□□ 0.84
C2CD3-219ENST00000542930 CC2D2AQ9P2K1 1620 aa20.32■□□□□ 0.84
C2CD3-219ENST00000542930 DNAJC5Q9H3Z4 198 aa20.31■□□□□ 0.84
C2CD3-219ENST00000542930 EIF4G1Q04637 1599 aaKnown RBP20.17■□□□□ 0.82
C2CD3-219ENST00000542930 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
C2CD3-219ENST00000542930 ZCCHC6Q5VYS8 1495 aaKnown RBP19.99■□□□□ 0.79
C2CD3-219ENST00000542930 SCRIBQ14160 1630 aa19.98■□□□□ 0.79
C2CD3-219ENST00000542930 CUX2O14529 1486 aa19.67■□□□□ 0.74
C2CD3-219ENST00000542930 ERCC6Q03468 1493 aa19.51■□□□□ 0.71
C2CD3-219ENST00000542930 NCAPD3P42695 1498 aa19.37■□□□□ 0.69
C2CD3-219ENST00000542930 ATAD2BQ9ULI0 1458 aa19.22■□□□□ 0.67
C2CD3-219ENST00000542930 NESP48681 1621 aa19.2■□□□□ 0.66
C2CD3-219ENST00000542930 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
C2CD3-219ENST00000542930 TRIM41Q8WV44 630 aa19.15■□□□□ 0.66
C2CD3-219ENST00000542930 SMARCA2P51531 1590 aa19.13■□□□□ 0.65
C2CD3-219ENST00000542930 THOC2Q8NI27 1593 aaKnown RBP19.1■□□□□ 0.65
C2CD3-219ENST00000542930 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
C2CD3-219ENST00000542930 LAMC3Q9Y6N6 1575 aa19■□□□□ 0.63
C2CD3-219ENST00000542930 BAZ1BQ9UIG0 1483 aaKnown RBP18.99■□□□□ 0.63
C2CD3-219ENST00000542930 PDS5BQ9NTI5 1447 aa18.93■□□□□ 0.62
C2CD3-219ENST00000542930 KIF21AQ7Z4S6 1674 aa18.9■□□□□ 0.62
C2CD3-219ENST00000542930 PEG3Q9GZU2 1588 aa18.88■□□□□ 0.61
C2CD3-219ENST00000542930 BAZ1AQ9NRL2 1556 aaPredicted RBP18.88■□□□□ 0.61
C2CD3-219ENST00000542930 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.6
C2CD3-219ENST00000542930 CADPSQ9ULU8 1353 aa18.76■□□□□ 0.59
C2CD3-219ENST00000542930 WDR62O43379 1518 aa18.74■□□□□ 0.59
C2CD3-219ENST00000542930 OSCARQ8IYS5 282 aa18.72■□□□□ 0.59
C2CD3-219ENST00000542930 MROH2BQ7Z745 1585 aa18.68■□□□□ 0.58
C2CD3-219ENST00000542930 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.57
C2CD3-219ENST00000542930 FANCD2Q9BXW9 1451 aa18.52■□□□□ 0.56
C2CD3-219ENST00000542930 RIMBP3CA6NJZ7 1639 aa18.46■□□□□ 0.55
C2CD3-219ENST00000542930 RIMBP3BA6NNM3 1639 aa18.46■□□□□ 0.55
C2CD3-219ENST00000542930 RIMBP3Q9UFD9 1639 aa18.46■□□□□ 0.55
C2CD3-219ENST00000542930 CFTRP13569 1480 aa18.42■□□□□ 0.54
C2CD3-219ENST00000542930 WIZO95785 1651 aa18.41■□□□□ 0.54
C2CD3-219ENST00000542930 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.54
C2CD3-219ENST00000542930 ARHGEF11O15085 1522 aa18.37■□□□□ 0.53
C2CD3-219ENST00000542930 CYB5RLQ6IPT4 315 aa18.29■□□□□ 0.52
C2CD3-219ENST00000542930 TRHP20396 242 aaPredicted RBP18.27■□□□□ 0.52
C2CD3-219ENST00000542930 ZNF608Q9ULD9 1512 aaPredicted RBP18.26■□□□□ 0.51
C2CD3-219ENST00000542930 IFT140Q96RY7 1462 aa18.26■□□□□ 0.51
C2CD3-219ENST00000542930 TOP2AP11388 1531 aaKnown RBP18.16■□□□□ 0.5
C2CD3-219ENST00000542930 ARAP1Q96P48 1450 aa18.15■□□□□ 0.5
C2CD3-219ENST00000542930 AEBP2Q6ZN18 517 aaPredicted RBP18.14■□□□□ 0.49
C2CD3-219ENST00000542930 RSF1Q96T23 1441 aaPredicted RBP18.13■□□□□ 0.49
C2CD3-219ENST00000542930 EIF4G3O43432 1585 aaKnown RBP18.11■□□□□ 0.49
C2CD3-219ENST00000542930 PRDM2Q13029 1718 aa18.11■□□□□ 0.49
C2CD3-219ENST00000542930 TOPBP1Q92547 1522 aa18.1■□□□□ 0.49
C2CD3-219ENST00000542930 ABCC8Q09428 1581 aa18.06■□□□□ 0.48
C2CD3-219ENST00000542930 CHD1O14646 1710 aa18.05■□□□□ 0.48
C2CD3-219ENST00000542930 AQRO60306 1485 aaKnown RBP eCLIP18.03■□□□□ 0.48
C2CD3-219ENST00000542930 FBLN2P98095 1184 aa18.03■□□□□ 0.48
C2CD3-219ENST00000542930 DNMBPQ6XZF7 1577 aa17.98■□□□□ 0.47
C2CD3-219ENST00000542930 TARBP1Q13395 1621 aaKnown RBP17.98■□□□□ 0.47
C2CD3-219ENST00000542930 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
C2CD3-219ENST00000542930 POLA1P09884 1462 aaPredicted RBP17.88■□□□□ 0.45
C2CD3-219ENST00000542930 CLASP1Q7Z460 1538 aa17.88■□□□□ 0.45
C2CD3-219ENST00000542930 TDRD9Q8NDG6 1382 aaKnown RBP17.84■□□□□ 0.45
C2CD3-219ENST00000542930 CHMP7Q8WUX9 453 aaPredicted RBP17.83■□□□□ 0.44
C2CD3-219ENST00000542930 SNAPC4Q5SXM2 1469 aa17.82■□□□□ 0.44
C2CD3-219ENST00000542930 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
C2CD3-219ENST00000542930 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
C2CD3-219ENST00000542930 SOGA1O94964 1423 aa17.81■□□□□ 0.44
C2CD3-219ENST00000542930 WDR97A6NE52 1622 aa17.78■□□□□ 0.44
C2CD3-219ENST00000542930 MAGI1Q96QZ7 1491 aaPredicted RBP17.77■□□□□ 0.44
C2CD3-219ENST00000542930 GAPVD1Q14C86 1478 aa17.74■□□□□ 0.43
C2CD3-219ENST00000542930 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
C2CD3-219ENST00000542930 GRIN2BQ13224 1484 aa17.71■□□□□ 0.43
C2CD3-219ENST00000542930 FGD5Q6ZNL6 1462 aa17.69■□□□□ 0.42
C2CD3-219ENST00000542930 CUX1P39880 1505 aa17.58■□□□□ 0.41
C2CD3-219ENST00000542930 PBRM1Q86U86 1689 aa17.55■□□□□ 0.4
C2CD3-219ENST00000542930 ERCC6L2Q5T890 1561 aa17.54■□□□□ 0.4
C2CD3-219ENST00000542930 GRIN2AQ12879 1464 aa17.48■□□□□ 0.39
C2CD3-219ENST00000542930 CEP170Q5SW79 1584 aa17.48■□□□□ 0.39
C2CD3-219ENST00000542930 ABCA10Q8WWZ4 1543 aa17.47■□□□□ 0.39
C2CD3-219ENST00000542930 ABCA5Q8WWZ7 1642 aa17.47■□□□□ 0.39
C2CD3-219ENST00000542930 KIF13AQ9H1H9 1805 aa17.46■□□□□ 0.39
C2CD3-219ENST00000542930 NUP160Q12769 1436 aa17.46■□□□□ 0.39
C2CD3-219ENST00000542930 SHROOM2Q13796 1616 aa17.41■□□□□ 0.38
C2CD3-219ENST00000542930 ILDR1Q86SU0 546 aaPredicted RBP17.4■□□□□ 0.38
C2CD3-219ENST00000542930 ADAMTS12P58397 1594 aa17.37■□□□□ 0.37
C2CD3-219ENST00000542930 KDM4FA0A1W2PPD8 638 aa17.37■□□□□ 0.37
C2CD3-219ENST00000542930 FAM69CQ0P6D2 419 aa17.37■□□□□ 0.37
C2CD3-219ENST00000542930 ABCC10Q5T3U5 1492 aa17.36■□□□□ 0.37
C2CD3-219ENST00000542930 FHAD1B1AJZ9 1412 aa17.34■□□□□ 0.37
C2CD3-219ENST00000542930 PRG4Q92954 1404 aaPredicted RBP17.32■□□□□ 0.36
C2CD3-219ENST00000542930 WRNQ14191 1432 aaPredicted RBP eCLIP17.31■□□□□ 0.36
C2CD3-219ENST00000542930 NPM1P06748 294 aaKnown RBP eCLIP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms