RNA–Protein interactions for RNA: ENST00000542848.5

PTPN6-219, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 5

Gene PTPN6, Length 656 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-219ENST00000542848 NISCHQ9Y2I1 1504 aa29.79■■■□□ 2.36
PTPN6-219ENST00000542848 CCDC180Q9P1Z9 1646 aa26.81■■□□□ 1.88
PTPN6-219ENST00000542848 ABCC9O60706 1549 aa26.7■■□□□ 1.87
PTPN6-219ENST00000542848 RB1CC1Q8TDY2 1594 aa25.49■■□□□ 1.67
PTPN6-219ENST00000542848 NACADO15069 1562 aa25.31■■□□□ 1.64
PTPN6-219ENST00000542848 DCAF8L2P0C7V8 631 aa25.1■■□□□ 1.61
PTPN6-219ENST00000542848 DNAJC5BQ9UF47 199 aa25.06■■□□□ 1.6
PTPN6-219ENST00000542848 UNC13AQ9UPW8 1703 aa25■■□□□ 1.59
PTPN6-219ENST00000542848 MYO15BQ96JP2 1530 aa24.96■■□□□ 1.59
PTPN6-219ENST00000542848 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
PTPN6-219ENST00000542848 BICRAQ9NZM4 1560 aa24.73■■□□□ 1.55
PTPN6-219ENST00000542848 ZCCHC6Q5VYS8 1495 aaKnown RBP24.66■■□□□ 1.54
PTPN6-219ENST00000542848 DCAF1Q9Y4B6 1507 aa24.64■■□□□ 1.53
PTPN6-219ENST00000542848 SHROOM4Q9ULL8 1493 aa24.42■■□□□ 1.5
PTPN6-219ENST00000542848 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
PTPN6-219ENST00000542848 CC2D2AQ9P2K1 1620 aa24.18■■□□□ 1.46
PTPN6-219ENST00000542848 EIF4G1Q04637 1599 aaKnown RBP24.12■■□□□ 1.45
PTPN6-219ENST00000542848 CECR2Q9BXF3 1484 aa24.07■■□□□ 1.44
PTPN6-219ENST00000542848 NCAPD3P42695 1498 aa23.34■■□□□ 1.33
PTPN6-219ENST00000542848 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
PTPN6-219ENST00000542848 ATAD2BQ9ULI0 1458 aa23.25■■□□□ 1.31
PTPN6-219ENST00000542848 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
PTPN6-219ENST00000542848 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
PTPN6-219ENST00000542848 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.29
PTPN6-219ENST00000542848 CUX2O14529 1486 aa23.07■■□□□ 1.28
PTPN6-219ENST00000542848 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
PTPN6-219ENST00000542848 DNAJC5Q9H3Z4 198 aa23.07■■□□□ 1.28
PTPN6-219ENST00000542848 PEG3Q9GZU2 1588 aa23.05■■□□□ 1.28
PTPN6-219ENST00000542848 BAZ1BQ9UIG0 1483 aaKnown RBP23.03■■□□□ 1.28
PTPN6-219ENST00000542848 NESP48681 1621 aa22.94■■□□□ 1.26
PTPN6-219ENST00000542848 MROH2BQ7Z745 1585 aa22.93■■□□□ 1.26
PTPN6-219ENST00000542848 LAMC3Q9Y6N6 1575 aa22.85■■□□□ 1.25
PTPN6-219ENST00000542848 THOC2Q8NI27 1593 aaKnown RBP22.76■■□□□ 1.23
PTPN6-219ENST00000542848 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
PTPN6-219ENST00000542848 WIZO95785 1651 aa22.69■■□□□ 1.22
PTPN6-219ENST00000542848 PDS5BQ9NTI5 1447 aa22.68■■□□□ 1.22
PTPN6-219ENST00000542848 CADPSQ9ULU8 1353 aa22.62■■□□□ 1.21
PTPN6-219ENST00000542848 MRC2Q9UBG0 1479 aa22.47■■□□□ 1.19
PTPN6-219ENST00000542848 RSF1Q96T23 1441 aaPredicted RBP22.44■■□□□ 1.18
PTPN6-219ENST00000542848 WDR62O43379 1518 aa22.43■■□□□ 1.18
PTPN6-219ENST00000542848 CEP164Q9UPV0 1460 aa22.39■■□□□ 1.17
PTPN6-219ENST00000542848 TOP2AP11388 1531 aaKnown RBP22.38■■□□□ 1.17
PTPN6-219ENST00000542848 CFTRP13569 1480 aa22.36■■□□□ 1.17
PTPN6-219ENST00000542848 FANCD2Q9BXW9 1451 aa22.35■■□□□ 1.17
PTPN6-219ENST00000542848 PRDM2Q13029 1718 aa22.28■■□□□ 1.16
PTPN6-219ENST00000542848 URB2Q14146 1524 aaKnown RBP22.17■■□□□ 1.14
PTPN6-219ENST00000542848 CCDC88BA6NC98 1476 aa22.12■■□□□ 1.13
PTPN6-219ENST00000542848 OSCARQ8IYS5 282 aa22.02■■□□□ 1.12
PTPN6-219ENST00000542848 TRIM41Q8WV44 630 aa22■■□□□ 1.11
PTPN6-219ENST00000542848 IFT140Q96RY7 1462 aa21.95■■□□□ 1.1
PTPN6-219ENST00000542848 ABCC8Q09428 1581 aa21.95■■□□□ 1.1
PTPN6-219ENST00000542848 TOPBP1Q92547 1522 aa21.94■■□□□ 1.1
PTPN6-219ENST00000542848 ZNF608Q9ULD9 1512 aaPredicted RBP21.89■■□□□ 1.09
PTPN6-219ENST00000542848 DNMBPQ6XZF7 1577 aa21.87■■□□□ 1.09
PTPN6-219ENST00000542848 EIF4G3O43432 1585 aaKnown RBP21.8■■□□□ 1.08
PTPN6-219ENST00000542848 TARBP1Q13395 1621 aaKnown RBP21.78■■□□□ 1.08
PTPN6-219ENST00000542848 RIMBP3CA6NJZ7 1639 aa21.74■■□□□ 1.07
PTPN6-219ENST00000542848 RIMBP3BA6NNM3 1639 aa21.74■■□□□ 1.07
PTPN6-219ENST00000542848 RIMBP3Q9UFD9 1639 aa21.74■■□□□ 1.07
PTPN6-219ENST00000542848 CHD1O14646 1710 aa21.7■■□□□ 1.06
PTPN6-219ENST00000542848 POLA1P09884 1462 aaPredicted RBP21.7■■□□□ 1.06
PTPN6-219ENST00000542848 AQRO60306 1485 aaKnown RBP eCLIP21.69■■□□□ 1.06
PTPN6-219ENST00000542848 ARHGEF11O15085 1522 aa21.65■■□□□ 1.06
PTPN6-219ENST00000542848 RAD54L2Q9Y4B4 1467 aa21.61■■□□□ 1.05
PTPN6-219ENST00000542848 SOGA1O94964 1423 aa21.61■■□□□ 1.05
PTPN6-219ENST00000542848 WDR97A6NE52 1622 aa21.58■■□□□ 1.05
PTPN6-219ENST00000542848 FGD5Q6ZNL6 1462 aa21.56■■□□□ 1.04
PTPN6-219ENST00000542848 CUX1P39880 1505 aa21.55■■□□□ 1.04
PTPN6-219ENST00000542848 TDRD9Q8NDG6 1382 aaKnown RBP21.54■■□□□ 1.04
PTPN6-219ENST00000542848 FBLN2P98095 1184 aa21.54■■□□□ 1.04
PTPN6-219ENST00000542848 CYB5RLQ6IPT4 315 aa21.47■■□□□ 1.03
PTPN6-219ENST00000542848 SNAPC4Q5SXM2 1469 aa21.46■■□□□ 1.03
PTPN6-219ENST00000542848 MAGI1Q96QZ7 1491 aaPredicted RBP21.45■■□□□ 1.02
PTPN6-219ENST00000542848 GRIN2BQ13224 1484 aa21.43■■□□□ 1.02
PTPN6-219ENST00000542848 PBRM1Q86U86 1689 aa21.41■■□□□ 1.02
PTPN6-219ENST00000542848 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
PTPN6-219ENST00000542848 SUPT5HO00267 1087 aaKnown RBP21.41■■□□□ 1.02
PTPN6-219ENST00000542848 CHMP7Q8WUX9 453 aaPredicted RBP21.41■■□□□ 1.02
PTPN6-219ENST00000542848 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
PTPN6-219ENST00000542848 CLASP1Q7Z460 1538 aa21.39■■□□□ 1.01
PTPN6-219ENST00000542848 SYNJ2O15056 1496 aa21.36■■□□□ 1.01
PTPN6-219ENST00000542848 GAPVD1Q14C86 1478 aa21.36■■□□□ 1.01
PTPN6-219ENST00000542848 ABCA10Q8WWZ4 1543 aa21.34■■□□□ 1.01
PTPN6-219ENST00000542848 ABCA5Q8WWZ7 1642 aa21.33■■□□□ 1
PTPN6-219ENST00000542848 BIVM-ERCC5R4GMW8 1640 aa21.26■□□□□ 0.99
PTPN6-219ENST00000542848 TOP2BQ02880 1626 aa21.24■□□□□ 0.99
PTPN6-219ENST00000542848 WRNQ14191 1432 aaPredicted RBP eCLIP21.23■□□□□ 0.99
PTPN6-219ENST00000542848 TRHP20396 242 aaPredicted RBP21.23■□□□□ 0.99
PTPN6-219ENST00000542848 ADAMTS12P58397 1594 aa21.14■□□□□ 0.98
PTPN6-219ENST00000542848 GRIN2AQ12879 1464 aa21.14■□□□□ 0.98
PTPN6-219ENST00000542848 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
PTPN6-219ENST00000542848 FHAD1B1AJZ9 1412 aa21.08■□□□□ 0.97
PTPN6-219ENST00000542848 NUP160Q12769 1436 aa21.08■□□□□ 0.97
PTPN6-219ENST00000542848 CEP170Q5SW79 1584 aa21.07■□□□□ 0.96
PTPN6-219ENST00000542848 SHROOM2Q13796 1616 aa21.04■□□□□ 0.96
PTPN6-219ENST00000542848 ERCC6L2Q5T890 1561 aa21.02■□□□□ 0.96
PTPN6-219ENST00000542848 JPH4Q96JJ6 628 aa20.88■□□□□ 0.93
PTPN6-219ENST00000542848 PRG4Q92954 1404 aaPredicted RBP20.87■□□□□ 0.93
PTPN6-219ENST00000542848 RUSC2Q8N2Y8 1516 aa20.84■□□□□ 0.93
PTPN6-219ENST00000542848 KIF13AQ9H1H9 1805 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms