RNA–Protein interactions for RNA: ENST00000542846.5

LRTOMT-220, Transcript of leucine rich transmembrane and O-methyltransferase domain containing, humanhuman

TSL 5

Gene LRTOMT, Length 527 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTOMT-220ENST00000542846 NISCHQ9Y2I1 1504 aa15.41■□□□□ 0.06
LRTOMT-220ENST00000542846 CCDC180Q9P1Z9 1646 aa13.77□□□□□ -0.21
LRTOMT-220ENST00000542846 ABCC9O60706 1549 aa13.44□□□□□ -0.26
LRTOMT-220ENST00000542846 RB1CC1Q8TDY2 1594 aa12.95□□□□□ -0.34
LRTOMT-220ENST00000542846 NACADO15069 1562 aa12.93□□□□□ -0.34
LRTOMT-220ENST00000542846 MYO15BQ96JP2 1530 aa12.85□□□□□ -0.35
LRTOMT-220ENST00000542846 ZCCHC6Q5VYS8 1495 aaKnown RBP12.84□□□□□ -0.35
LRTOMT-220ENST00000542846 DCAF8L2P0C7V8 631 aa12.79□□□□□ -0.36
LRTOMT-220ENST00000542846 DCAF1Q9Y4B6 1507 aa12.78□□□□□ -0.36
LRTOMT-220ENST00000542846 UNC13AQ9UPW8 1703 aa12.68□□□□□ -0.38
LRTOMT-220ENST00000542846 BICRAQ9NZM4 1560 aa12.56□□□□□ -0.4
LRTOMT-220ENST00000542846 PABPN1Q86U42 306 aaKnown RBP eCLIP12.51□□□□□ -0.41
LRTOMT-220ENST00000542846 SCRIBQ14160 1630 aa12.51□□□□□ -0.41
LRTOMT-220ENST00000542846 SHROOM4Q9ULL8 1493 aa12.46□□□□□ -0.42
LRTOMT-220ENST00000542846 DNAJC5BQ9UF47 199 aa12.34□□□□□ -0.43
LRTOMT-220ENST00000542846 EIF4G1Q04637 1599 aaKnown RBP12.23□□□□□ -0.45
LRTOMT-220ENST00000542846 CC2D2AQ9P2K1 1620 aa12.19□□□□□ -0.46
LRTOMT-220ENST00000542846 CECR2Q9BXF3 1484 aa12.09□□□□□ -0.47
LRTOMT-220ENST00000542846 SMARCA4P51532 1647 aa11.97□□□□□ -0.49
LRTOMT-220ENST00000542846 BAZ1AQ9NRL2 1556 aaPredicted RBP11.96□□□□□ -0.5
LRTOMT-220ENST00000542846 NCAPD3P42695 1498 aa11.91□□□□□ -0.5
LRTOMT-220ENST00000542846 SMARCA2P51531 1590 aa11.91□□□□□ -0.5
LRTOMT-220ENST00000542846 ATAD2BQ9ULI0 1458 aa11.9□□□□□ -0.5
LRTOMT-220ENST00000542846 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
LRTOMT-220ENST00000542846 HMGXB3Q12766 1538 aa11.87□□□□□ -0.51
LRTOMT-220ENST00000542846 MROH2BQ7Z745 1585 aa11.86□□□□□ -0.51
LRTOMT-220ENST00000542846 BAZ1BQ9UIG0 1483 aaKnown RBP11.8□□□□□ -0.52
LRTOMT-220ENST00000542846 WIZO95785 1651 aa11.74□□□□□ -0.53
LRTOMT-220ENST00000542846 RSF1Q96T23 1441 aaPredicted RBP11.69□□□□□ -0.54
LRTOMT-220ENST00000542846 LAMC3Q9Y6N6 1575 aa11.62□□□□□ -0.55
LRTOMT-220ENST00000542846 TOP2AP11388 1531 aaKnown RBP11.62□□□□□ -0.55
LRTOMT-220ENST00000542846 NESP48681 1621 aa11.61□□□□□ -0.55
LRTOMT-220ENST00000542846 ERCC6Q03468 1493 aa11.59□□□□□ -0.55
LRTOMT-220ENST00000542846 CADPSQ9ULU8 1353 aa11.54□□□□□ -0.56
LRTOMT-220ENST00000542846 KIF21AQ7Z4S6 1674 aa11.52□□□□□ -0.56
LRTOMT-220ENST00000542846 PDS5BQ9NTI5 1447 aa11.52□□□□□ -0.57
LRTOMT-220ENST00000542846 CUX2O14529 1486 aa11.51□□□□□ -0.57
LRTOMT-220ENST00000542846 THOC2Q8NI27 1593 aaKnown RBP11.5□□□□□ -0.57
LRTOMT-220ENST00000542846 CFTRP13569 1480 aa11.48□□□□□ -0.57
LRTOMT-220ENST00000542846 CCDC88BA6NC98 1476 aa11.45□□□□□ -0.58
LRTOMT-220ENST00000542846 PRDM2Q13029 1718 aa11.45□□□□□ -0.58
LRTOMT-220ENST00000542846 FANCD2Q9BXW9 1451 aa11.42□□□□□ -0.58
LRTOMT-220ENST00000542846 CEP164Q9UPV0 1460 aa11.42□□□□□ -0.58
LRTOMT-220ENST00000542846 MRC2Q9UBG0 1479 aa11.41□□□□□ -0.58
LRTOMT-220ENST00000542846 WDR62O43379 1518 aa11.4□□□□□ -0.59
LRTOMT-220ENST00000542846 URB2Q14146 1524 aaKnown RBP11.31□□□□□ -0.6
LRTOMT-220ENST00000542846 SUPT5HO00267 1087 aaKnown RBP11.3□□□□□ -0.6
LRTOMT-220ENST00000542846 ABCC8Q09428 1581 aa11.24□□□□□ -0.61
LRTOMT-220ENST00000542846 TOPBP1Q92547 1522 aa11.24□□□□□ -0.61
LRTOMT-220ENST00000542846 DNMBPQ6XZF7 1577 aa11.24□□□□□ -0.61
LRTOMT-220ENST00000542846 IFT140Q96RY7 1462 aa11.19□□□□□ -0.62
LRTOMT-220ENST00000542846 DNAJC5Q9H3Z4 198 aa11.17□□□□□ -0.62
LRTOMT-220ENST00000542846 POLA1P09884 1462 aaPredicted RBP11.14□□□□□ -0.63
LRTOMT-220ENST00000542846 TARBP1Q13395 1621 aaKnown RBP11.14□□□□□ -0.63
LRTOMT-220ENST00000542846 CUX1P39880 1505 aa11.14□□□□□ -0.63
LRTOMT-220ENST00000542846 ZNF608Q9ULD9 1512 aaPredicted RBP11.12□□□□□ -0.63
LRTOMT-220ENST00000542846 EIF4G3O43432 1585 aaKnown RBP11.11□□□□□ -0.63
LRTOMT-220ENST00000542846 FGD5Q6ZNL6 1462 aa11.1□□□□□ -0.63
LRTOMT-220ENST00000542846 WDR97A6NE52 1622 aa11.08□□□□□ -0.64
LRTOMT-220ENST00000542846 SOGA1O94964 1423 aa11.07□□□□□ -0.64
LRTOMT-220ENST00000542846 RAD54L2Q9Y4B4 1467 aa11.06□□□□□ -0.64
LRTOMT-220ENST00000542846 BIVM-ERCC5R4GMW8 1640 aa11.06□□□□□ -0.64
LRTOMT-220ENST00000542846 TOP2BQ02880 1626 aa11.04□□□□□ -0.64
LRTOMT-220ENST00000542846 WRNQ14191 1432 aaPredicted RBP eCLIP11.03□□□□□ -0.64
LRTOMT-220ENST00000542846 AQRO60306 1485 aaKnown RBP eCLIP11.03□□□□□ -0.64
LRTOMT-220ENST00000542846 SYNJ1O43426 1573 aa11.03□□□□□ -0.64
LRTOMT-220ENST00000542846 ABCA10Q8WWZ4 1543 aa11□□□□□ -0.65
LRTOMT-220ENST00000542846 TDRD9Q8NDG6 1382 aaKnown RBP11□□□□□ -0.65
LRTOMT-220ENST00000542846 ABCA5Q8WWZ7 1642 aa10.98□□□□□ -0.65
LRTOMT-220ENST00000542846 CHD1O14646 1710 aa10.98□□□□□ -0.65
LRTOMT-220ENST00000542846 PBRM1Q86U86 1689 aa10.98□□□□□ -0.65
LRTOMT-220ENST00000542846 OSCARQ8IYS5 282 aa10.97□□□□□ -0.65
LRTOMT-220ENST00000542846 GRIN2BQ13224 1484 aa10.97□□□□□ -0.65
LRTOMT-220ENST00000542846 GAPVD1Q14C86 1478 aa10.95□□□□□ -0.66
LRTOMT-220ENST00000542846 SNAPC4Q5SXM2 1469 aa10.95□□□□□ -0.66
LRTOMT-220ENST00000542846 MAGI1Q96QZ7 1491 aaPredicted RBP10.95□□□□□ -0.66
LRTOMT-220ENST00000542846 SYNJ2O15056 1496 aa10.91□□□□□ -0.66
LRTOMT-220ENST00000542846 ADAMTS12P58397 1594 aa10.88□□□□□ -0.67
LRTOMT-220ENST00000542846 ERICH3Q5RHP9 1530 aa10.88□□□□□ -0.67
LRTOMT-220ENST00000542846 FBLN2P98095 1184 aa10.87□□□□□ -0.67
LRTOMT-220ENST00000542846 CLASP1Q7Z460 1538 aa10.86□□□□□ -0.67
LRTOMT-220ENST00000542846 CHMP7Q8WUX9 453 aaPredicted RBP10.86□□□□□ -0.67
LRTOMT-220ENST00000542846 RIMBP3CA6NJZ7 1639 aa10.86□□□□□ -0.67
LRTOMT-220ENST00000542846 RIMBP3BA6NNM3 1639 aa10.86□□□□□ -0.67
LRTOMT-220ENST00000542846 RIMBP3Q9UFD9 1639 aa10.86□□□□□ -0.67
LRTOMT-220ENST00000542846 ARHGEF11O15085 1522 aa10.84□□□□□ -0.67
LRTOMT-220ENST00000542846 GRIN2AQ12879 1464 aa10.83□□□□□ -0.68
LRTOMT-220ENST00000542846 FHAD1B1AJZ9 1412 aa10.83□□□□□ -0.68
LRTOMT-220ENST00000542846 KIF27Q86VH2 1401 aa10.81□□□□□ -0.68
LRTOMT-220ENST00000542846 NUP160Q12769 1436 aa10.79□□□□□ -0.68
LRTOMT-220ENST00000542846 CUL7Q14999 1698 aa10.79□□□□□ -0.68
LRTOMT-220ENST00000542846 CEP170Q5SW79 1584 aa10.78□□□□□ -0.68
LRTOMT-220ENST00000542846 TRIM41Q8WV44 630 aa10.76□□□□□ -0.69
LRTOMT-220ENST00000542846 ARAP1Q96P48 1450 aa10.75□□□□□ -0.69
LRTOMT-220ENST00000542846 IGF1RP08069 1367 aa10.75□□□□□ -0.69
LRTOMT-220ENST00000542846 SHROOM2Q13796 1616 aa10.73□□□□□ -0.69
LRTOMT-220ENST00000542846 RUSC2Q8N2Y8 1516 aa10.73□□□□□ -0.69
LRTOMT-220ENST00000542846 CARMIL1Q5VZK9 1371 aa10.68□□□□□ -0.7
LRTOMT-220ENST00000542846 CYB5RLQ6IPT4 315 aa10.68□□□□□ -0.7
LRTOMT-220ENST00000542846 ERCC6L2Q5T890 1561 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms