RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 NISCHQ9Y2I1 1504 aa28.48■■■□□ 2.15
SRGAP1-205ENST00000542841 ABCC9O60706 1549 aa26.09■■□□□ 1.77
SRGAP1-205ENST00000542841 CCDC180Q9P1Z9 1646 aa25.69■■□□□ 1.7
SRGAP1-205ENST00000542841 DNAJC5BQ9UF47 199 aa24.8■■□□□ 1.56
SRGAP1-205ENST00000542841 RB1CC1Q8TDY2 1594 aa24.67■■□□□ 1.54
SRGAP1-205ENST00000542841 NACADO15069 1562 aa24.42■■□□□ 1.5
SRGAP1-205ENST00000542841 DCAF8L2P0C7V8 631 aa24.26■■□□□ 1.47
SRGAP1-205ENST00000542841 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
SRGAP1-205ENST00000542841 UNC13AQ9UPW8 1703 aa24.04■■□□□ 1.44
SRGAP1-205ENST00000542841 MYO15BQ96JP2 1530 aa23.95■■□□□ 1.43
SRGAP1-205ENST00000542841 BICRAQ9NZM4 1560 aa23.93■■□□□ 1.42
SRGAP1-205ENST00000542841 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
SRGAP1-205ENST00000542841 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
SRGAP1-205ENST00000542841 CC2D2AQ9P2K1 1620 aa23.53■■□□□ 1.36
SRGAP1-205ENST00000542841 ZCCHC6Q5VYS8 1495 aaKnown RBP23.51■■□□□ 1.35
SRGAP1-205ENST00000542841 DCAF1Q9Y4B6 1507 aa23.5■■□□□ 1.35
SRGAP1-205ENST00000542841 EIF4G1Q04637 1599 aaKnown RBP23.4■■□□□ 1.34
SRGAP1-205ENST00000542841 SCRIBQ14160 1630 aa23.4■■□□□ 1.34
SRGAP1-205ENST00000542841 DNAJC5Q9H3Z4 198 aa23.08■■□□□ 1.29
SRGAP1-205ENST00000542841 CUX2O14529 1486 aa22.66■■□□□ 1.22
SRGAP1-205ENST00000542841 ERCC6Q03468 1493 aa22.59■■□□□ 1.21
SRGAP1-205ENST00000542841 NCAPD3P42695 1498 aa22.55■■□□□ 1.2
SRGAP1-205ENST00000542841 ATAD2BQ9ULI0 1458 aa22.42■■□□□ 1.18
SRGAP1-205ENST00000542841 SMARCA2P51531 1590 aa22.34■■□□□ 1.17
SRGAP1-205ENST00000542841 HMGXB3Q12766 1538 aa22.33■■□□□ 1.17
SRGAP1-205ENST00000542841 NESP48681 1621 aa22.29■■□□□ 1.16
SRGAP1-205ENST00000542841 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
SRGAP1-205ENST00000542841 BAZ1BQ9UIG0 1483 aaKnown RBP22.2■■□□□ 1.14
SRGAP1-205ENST00000542841 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.13
SRGAP1-205ENST00000542841 THOC2Q8NI27 1593 aaKnown RBP22.12■■□□□ 1.13
SRGAP1-205ENST00000542841 LAMC3Q9Y6N6 1575 aa22.09■■□□□ 1.13
SRGAP1-205ENST00000542841 PEG3Q9GZU2 1588 aa22.08■■□□□ 1.12
SRGAP1-205ENST00000542841 PDS5BQ9NTI5 1447 aa22.01■■□□□ 1.11
SRGAP1-205ENST00000542841 KIF21AQ7Z4S6 1674 aa21.96■■□□□ 1.11
SRGAP1-205ENST00000542841 MROH2BQ7Z745 1585 aa21.92■■□□□ 1.1
SRGAP1-205ENST00000542841 TRIM41Q8WV44 630 aa21.92■■□□□ 1.1
SRGAP1-205ENST00000542841 CADPSQ9ULU8 1353 aa21.86■■□□□ 1.09
SRGAP1-205ENST00000542841 MRC2Q9UBG0 1479 aa21.82■■□□□ 1.08
SRGAP1-205ENST00000542841 WDR62O43379 1518 aa21.76■■□□□ 1.07
SRGAP1-205ENST00000542841 CEP164Q9UPV0 1460 aa21.65■■□□□ 1.06
SRGAP1-205ENST00000542841 WIZO95785 1651 aa21.64■■□□□ 1.05
SRGAP1-205ENST00000542841 FANCD2Q9BXW9 1451 aa21.6■■□□□ 1.05
SRGAP1-205ENST00000542841 OSCARQ8IYS5 282 aa21.6■■□□□ 1.05
SRGAP1-205ENST00000542841 CFTRP13569 1480 aa21.52■■□□□ 1.03
SRGAP1-205ENST00000542841 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
SRGAP1-205ENST00000542841 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
SRGAP1-205ENST00000542841 TOP2AP11388 1531 aaKnown RBP21.35■■□□□ 1.01
SRGAP1-205ENST00000542841 RIMBP3CA6NJZ7 1639 aa21.29■■□□□ 1
SRGAP1-205ENST00000542841 RIMBP3BA6NNM3 1639 aa21.29■■□□□ 1
SRGAP1-205ENST00000542841 RIMBP3Q9UFD9 1639 aa21.29■■□□□ 1
SRGAP1-205ENST00000542841 IFT140Q96RY7 1462 aa21.25■□□□□ 0.99
SRGAP1-205ENST00000542841 ZNF608Q9ULD9 1512 aaPredicted RBP21.23■□□□□ 0.99
SRGAP1-205ENST00000542841 PRDM2Q13029 1718 aa21.21■□□□□ 0.99
SRGAP1-205ENST00000542841 ARHGEF11O15085 1522 aa21.2■□□□□ 0.98
SRGAP1-205ENST00000542841 TOPBP1Q92547 1522 aa21.14■□□□□ 0.97
SRGAP1-205ENST00000542841 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
SRGAP1-205ENST00000542841 CYB5RLQ6IPT4 315 aa21.11■□□□□ 0.97
SRGAP1-205ENST00000542841 ABCC8Q09428 1581 aa21.1■□□□□ 0.97
SRGAP1-205ENST00000542841 EIF4G3O43432 1585 aaKnown RBP21.08■□□□□ 0.97
SRGAP1-205ENST00000542841 DNMBPQ6XZF7 1577 aa21.02■□□□□ 0.96
SRGAP1-205ENST00000542841 TRHP20396 242 aaPredicted RBP21.01■□□□□ 0.95
SRGAP1-205ENST00000542841 AQRO60306 1485 aaKnown RBP eCLIP21■□□□□ 0.95
SRGAP1-205ENST00000542841 FBLN2P98095 1184 aa20.98■□□□□ 0.95
SRGAP1-205ENST00000542841 CHD1O14646 1710 aa20.97■□□□□ 0.95
SRGAP1-205ENST00000542841 TARBP1Q13395 1621 aaKnown RBP20.96■□□□□ 0.95
SRGAP1-205ENST00000542841 ARAP1Q96P48 1450 aa20.95■□□□□ 0.94
SRGAP1-205ENST00000542841 POLA1P09884 1462 aaPredicted RBP20.9■□□□□ 0.94
SRGAP1-205ENST00000542841 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.93
SRGAP1-205ENST00000542841 TDRD9Q8NDG6 1382 aaKnown RBP20.83■□□□□ 0.92
SRGAP1-205ENST00000542841 SOGA1O94964 1423 aa20.82■□□□□ 0.92
SRGAP1-205ENST00000542841 SNAPC4Q5SXM2 1469 aa20.77■□□□□ 0.92
SRGAP1-205ENST00000542841 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
SRGAP1-205ENST00000542841 WDR97A6NE52 1622 aa20.75■□□□□ 0.91
SRGAP1-205ENST00000542841 CLASP1Q7Z460 1538 aa20.74■□□□□ 0.91
SRGAP1-205ENST00000542841 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
SRGAP1-205ENST00000542841 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
SRGAP1-205ENST00000542841 MAGI1Q96QZ7 1491 aaPredicted RBP20.71■□□□□ 0.91
SRGAP1-205ENST00000542841 AEBP2Q6ZN18 517 aaPredicted RBP20.69■□□□□ 0.9
SRGAP1-205ENST00000542841 GRIN2BQ13224 1484 aa20.68■□□□□ 0.9
SRGAP1-205ENST00000542841 SYNJ2O15056 1496 aa20.66■□□□□ 0.9
SRGAP1-205ENST00000542841 CUX1P39880 1505 aa20.63■□□□□ 0.89
SRGAP1-205ENST00000542841 GAPVD1Q14C86 1478 aa20.58■□□□□ 0.89
SRGAP1-205ENST00000542841 PBRM1Q86U86 1689 aa20.52■□□□□ 0.88
SRGAP1-205ENST00000542841 ABCA10Q8WWZ4 1543 aa20.46■□□□□ 0.87
SRGAP1-205ENST00000542841 ABCA5Q8WWZ7 1642 aa20.44■□□□□ 0.86
SRGAP1-205ENST00000542841 GRIN2AQ12879 1464 aa20.4■□□□□ 0.86
SRGAP1-205ENST00000542841 ERCC6L2Q5T890 1561 aa20.38■□□□□ 0.85
SRGAP1-205ENST00000542841 NUP160Q12769 1436 aa20.35■□□□□ 0.85
SRGAP1-205ENST00000542841 CEP170Q5SW79 1584 aa20.34■□□□□ 0.85
SRGAP1-205ENST00000542841 WRNQ14191 1432 aaPredicted RBP eCLIP20.34■□□□□ 0.85
SRGAP1-205ENST00000542841 ADAMTS12P58397 1594 aa20.32■□□□□ 0.84
SRGAP1-205ENST00000542841 FHAD1B1AJZ9 1412 aa20.28■□□□□ 0.84
SRGAP1-205ENST00000542841 SHROOM2Q13796 1616 aa20.27■□□□□ 0.83
SRGAP1-205ENST00000542841 SUPT5HO00267 1087 aaKnown RBP20.21■□□□□ 0.83
SRGAP1-205ENST00000542841 ERICH3Q5RHP9 1530 aa20.21■□□□□ 0.83
SRGAP1-205ENST00000542841 PRG4Q92954 1404 aaPredicted RBP20.2■□□□□ 0.82
SRGAP1-205ENST00000542841 TOP2BQ02880 1626 aa20.2■□□□□ 0.82
SRGAP1-205ENST00000542841 KIF13AQ9H1H9 1805 aa20.18■□□□□ 0.82
SRGAP1-205ENST00000542841 BIVM-ERCC5R4GMW8 1640 aa20.18■□□□□ 0.82
SRGAP1-205ENST00000542841 JPH4Q96JJ6 628 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms